Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZPJ	14855	2024-02-19	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	15.40	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.9	0.003	0.64	0.0	0.04	17.29	0.01	1.980	12.22	2.33	4.5	95.5	0.0	0.29	1.48	0.64	0.57	0.40	23479	1355	3	55	0	0	11508	logfile
✔	7ZP9	14851	2024-02-18	2022-04-27	2.82	2.56	2.83	2.8	0.008	1.13	4.0	0.06	23.10	0.00	1.266	15.02	0.88	2.2	97.6	0.2	1.50	0.63	0.86	3.61	2.8	0.003	0.63	0.0	0.04	15.73	0.00	1.905	8.81	1.93	2.2	97.8	0.0	2.59	0.93	0.64	0.88	2.93	23097	2804	34	0	60	45	0	logfile
✔	7UTP	26786	2024-02-21	2022-04-27	3.8	2.72	3.52	2.2	0.007	1.10	0.0	0.06	15.95	0.01	2.076	3.73	0.42	3.8	96.1	0.0	-1.38	0.62	0.72	2.91	3.1	0.003	0.69	0.0	0.04	16.78	0.01	2.088	12.14	4.04	3.7	96.3	0.0	-0.60	0.44	0.64	0.74	2.67	31056	3762	10	0	207	0	0	logfile
✔	7UTS	26788	2024-02-19	2022-04-27	3.6	2.51	3.41	2.1	0.008	0.97	0.0	0.05	13.01	0.01	2.296	0.78	0.99	4.0	96.0	0.0	-1.10	0.59	0.65	2.93	2.1	0.006	0.86	1.0	0.04	15.22	0.01	2.056	12.90	3.26	3.8	96.2	0.0	-0.60	1.21	0.61	0.67	2.50	25804	3092	10	0	203	0	0	logfile
✔	7UTU	26789	2024-02-22	2022-04-27	3.0	2.33	2.86	2.0	0.006	0.99	0.0	0.05	15.29	0.01	2.067	2.87	0.26	2.8	97.2	0.0	-1.20	0.65	0.77	4.45	2.0	0.005	0.77	3.0	0.05	16.32	0.01	1.923	11.32	2.71	1.9	98.1	0.0	-0.60	0.43	0.66	0.78	3.79	33004	4003	10	0	210	0	0	logfile
✔	7UTN	26782	2024-02-13	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.55	0.0	0.03	23.18	0.00	2.178	8.50	0.87	1.0	99.0	0.0	0.90	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	7ZPA	14852	2024-02-14	2022-04-27	3.9	4.14	3.88	4.0	0.006	0.66	0.0	0.04	19.80	0.01	2.214	9.92	0.00	6.4	93.6	0.0	-0.40	0.76	0.75	1.14	4.0	0.003	0.61	0.0	0.04	21.11	0.00	2.106	10.32	1.55	5.3	94.7	0.0	-0.56	0.47	0.75	0.75	0.71	9121	874	4	95	0	0	0	logfile
✔	7XMX	33307	2024-02-20	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.65	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	21.0	0.003	0.66	0.0	0.04	14.30	0.00	2.124	10.62	2.07	5.6	94.3	0.1	-0.83	1.07	0.32	0.14	0.16	28727	3700	12	0	24	0	0	logfile
✔	7XN3	33309	2024-02-16	2022-04-27	2.9	3.05	2.92	3.0	0.006	0.62	0.0	0.05	13.52	0.00	2.174	6.06	2.37	7.9	92.1	0.0	-0.76	0.72	0.84	3.66	3.0	0.003	0.57	0.0	0.05	14.66	0.00	2.205	5.56	1.45	6.1	93.9	0.0	0.27	0.34	0.74	0.86	3.45	14016	1830	18	0	12	54	0	logfile
✔	7UTJ	26772	2024-02-19	2022-04-27	2.77	3.05	2.85	3.1	0.009	0.91	0.0	0.06	16.79	0.01	1.927	7.51	3.88	3.1	96.9	0.0	0.03	0.67	0.85	3.76	3.0	0.004	0.60	0.0	0.04	17.76	0.00	2.136	7.59	1.58	2.5	97.5	0.0	1.18	1.59	0.64	0.86	3.32	24591	3156	24	0	12	21	0	logfile
✔	7XMZ	33308	2024-02-21	2022-04-27	3.25	3.45	3.31	3.4	0.009	1.06	5.0	0.07	13.61	0.00	1.460	5.15	0.47	4.4	95.5	0.1	-1.48	0.73	0.80	3.38	3.4	0.003	0.58	0.0	0.04	13.68	0.00	2.157	6.33	1.90	3.5	96.5	0.0	-0.46	1.04	0.74	0.81	2.88	29203	3745	12	0	32	0	0	logfile
✔	7ZPM	14858	2024-02-17	2022-04-27	2.81	3.56	2.81	3.0	0.002	0.49	0.0	0.04	13.14	0.00	1.820	6.91	0.14	3.5	96.4	0.1	-0.23	0.93	0.88	3.42	3.0	0.003	0.66	0.0	0.04	15.08	0.00	2.140	9.14	0.89	3.1	96.9	0.0	0.81	1.06	0.93	0.91	3.13	19330	2412	6	0	0	0	0	logfile
✔	7UTV	26790	2024-02-22	2022-04-27	3.0	2.33	2.88	2.1	0.009	0.92	0.0	0.05	13.27	0.01	2.234	0.87	1.24	2.4	97.5	0.0	-0.60	0.65	0.81	5.31	2.1	0.003	0.61	0.0	0.04	16.17	0.00	2.144	8.28	2.36	1.8	98.2	0.0	-0.27	0.46	0.65	0.81	3.96	32546	3957	10	0	191	0	0	logfile
✔	7UTR	26787	2024-02-22	2022-04-27	3.7	2.66	3.48	2.9	0.008	0.92	0.0	0.05	12.99	0.01	2.067	0.73	0.66	3.7	96.3	0.0	-0.87	0.62	0.74	3.84	2.3	0.007	0.74	0.0	0.05	15.91	0.01	2.034	12.85	3.81	4.6	95.4	0.0	-0.63	0.54	0.64	0.75	3.01	32764	3976	10	0	202	0	0	logfile
✔	7USY	26743	2024-02-16	2022-04-26	3.54	3.90	3.64	3.9	0.004	0.78	0.0	0.04	17.18	0.01	1.415	8.72	0.28	3.0	97.0	0.0	1.55	0.56	0.69	0.66	3.8	0.003	0.55	0.0	0.04	17.27	0.00	2.163	8.51	2.71	2.9	97.1	0.0	1.75	0.37	0.54	0.64	0.76	16582	2025	13	0	16	0	0	logfile
✔	7USW	26741	2024-02-16	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	17.02	0.01	2.254	7.09	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.29	0.00	2.240	5.42	1.66	3.4	96.6	0.0	2.35	0.23	0.63	0.82	2.19	14322	1676	12	0	68	0	0	logfile
✔	7XML	33300	2024-02-13	2022-04-26	3.2	3.67	3.32	3.6	0.009	0.93	0.0	0.06	10.11	0.01	2.350	3.25	0.00	8.1	91.6	0.2	-4.61	0.64	0.80	3.23	3.6	0.003	0.59	0.0	0.04	13.76	0.00	2.272	5.44	2.46	5.9	94.1	0.0	-1.38	1.59	0.71	0.84	2.44	7626	990	5	0	2	0	0	logfile
✔	7UTH	26770	2024-02-23	2022-04-26	3.9	4.02	—	4.0	0.006	0.98	1.0	0.05	18.37	0.01	2.095	4.45	0.72	5.3	94.5	0.2	-0.70	0.46	0.67	0.95	4.0	0.003	0.57	1.0	0.03	18.80	0.00	1.937	12.11	4.17	5.7	94.1	0.1	0.66	1.73	0.51	0.71	0.59	36590	2242	2	0	0	0	18572	logfile
✔	7ZoQ	14848	2024-02-18	2022-04-26	3.2	3.56	3.42	3.5	0.003	0.65	1.0	0.05	16.62	0.00	2.223	6.90	0.81	7.5	91.7	0.8	0.03	0.70	0.79	1.64	3.5	0.005	0.68	0.0	0.04	17.38	0.00	2.139	9.36	1.19	9.2	90.3	0.6	-0.52	1.34	0.69	0.80	1.63	20866	2514	4	39	4	0	0	logfile
✔	7XMT	33304	2024-02-13	2022-04-26	2.8	2.93	2.65	3.0	0.002	0.47	0.0	0.04	9.40	0.00	2.267	6.46	0.00	3.0	97.0	0.0	-3.88	0.55	0.63	1.96	2.9	0.004	1.00	1.0	0.05	14.82	0.00	2.031	15.30	2.11	3.3	96.6	0.1	-0.52	1.30	0.61	0.75	2.84	8137	1068	6	0	1	0	0	logfile

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