Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XMR	33302	2024-02-13	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.38	0.00	2.112	11.80	2.73	3.6	96.4	0.0	0.22	0.64	0.59	0.74	1.47	6611	871	5	0	0	0	0	logfile
✔	7XML	33300	2024-02-13	2022-04-26	3.2	3.67	3.32	3.6	0.009	0.93	0.0	0.06	10.11	0.01	2.350	3.25	0.00	8.1	91.6	0.2	-4.61	0.64	0.80	3.23	3.6	0.003	0.59	0.0	0.04	13.76	0.00	2.272	5.44	2.46	5.9	94.1	0.0	-1.38	1.59	0.71	0.84	2.44	7626	990	5	0	2	0	0	logfile
✔	7XMS	33303	2024-02-14	2022-04-26	2.9	3.10	2.83	3.2	0.002	0.46	0.0	0.04	10.09	0.00	2.251	6.90	0.00	2.9	97.1	0.0	-4.06	0.55	0.65	1.49	3.1	0.003	0.72	0.0	0.04	15.34	0.00	2.087	13.99	2.07	4.1	95.9	0.0	-0.37	0.80	0.60	0.75	2.26	8370	1113	6	0	0	0	0	logfile
✔	7UT4	26754	2024-02-23	2022-04-26	3.9	4.06	—	4.0	0.006	0.93	0.0	0.04	18.88	0.01	2.087	5.16	0.53	5.0	94.9	0.0	-0.40	0.44	0.69	1.12	4.0	0.003	0.55	0.0	0.03	19.15	0.00	2.026	11.20	4.49	5.6	94.4	0.0	1.12	2.38	0.50	0.73	1.16	39740	2448	2	0	0	0	20092	logfile
✔	7USW	26741	2024-02-16	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	17.02	0.01	2.254	7.09	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.29	0.00	2.240	5.42	1.66	3.4	96.6	0.0	2.35	0.23	0.63	0.82	2.19	14322	1676	12	0	68	0	0	logfile
✔	7USY	26743	2024-02-16	2022-04-26	3.54	3.90	3.64	3.9	0.004	0.78	0.0	0.04	17.18	0.01	1.415	8.72	0.28	3.0	97.0	0.0	1.55	0.56	0.69	0.66	3.8	0.003	0.55	0.0	0.04	17.27	0.00	2.163	8.51	2.71	2.9	97.1	0.0	1.75	0.37	0.54	0.64	0.76	16582	2025	13	0	16	0	0	logfile
✔	7ZP8	14850	2024-02-21	2022-04-26	2.2	3.37	2.30	2.5	0.008	1.05	2.0	0.11	25.35	0.00	1.813	5.05	1.68	4.7	95.1	0.2	-0.45	0.78	0.87	4.53	2.5	0.006	0.61	0.0	0.04	23.14	0.00	2.055	7.76	1.80	4.7	95.3	0.1	0.10	1.62	0.81	0.93	4.16	90951	3145	32	3095	0	0	0	logfile
✔	7XMU	33305	2024-02-16	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.05	17.20	0.00	1.868	4.65	1.18	2.3	97.7	0.0	-0.04	1.10	0.77	0.88	4.72	15294	1842	18	0	36	822	0	logfile
✔	7ZoQ	14848	2024-02-18	2022-04-26	3.2	3.56	3.42	3.5	0.003	0.65	1.0	0.05	16.62	0.00	2.223	6.90	0.81	7.5	91.7	0.8	0.03	0.70	0.79	1.64	3.5	0.005	0.68	0.0	0.04	17.38	0.00	2.139	9.36	1.19	9.2	90.3	0.6	-0.52	1.34	0.69	0.80	1.63	20866	2514	4	39	4	0	0	logfile
✔	7USL	26738	2024-02-20	2022-04-25	2.7	2.28	—	1.9	0.004	0.61	0.0	0.05	13.60	0.00	2.106	5.30	0.00	3.2	96.8	0.0	-0.47	0.75	0.73	3.51	1.9	0.003	0.66	0.0	0.05	15.80	0.00	2.145	6.83	2.88	3.8	96.2	0.0	-0.69	0.37	0.77	0.76	3.02	19065	2464	10	0	49	0	0	logfile
✔	7USM	26739	2024-02-15	2022-04-25	2.7	2.25	—	1.5	0.003	0.63	0.0	0.04	12.83	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.005	0.75	0.0	0.05	16.16	0.00	2.127	10.32	2.13	4.6	95.4	0.0	-0.73	0.47	0.74	0.72	2.48	11893	1521	5	0	15	0	0	logfile
✔	7USE	26734	2024-02-19	2022-04-25	3.0	3.34	2.99	3.3	0.005	0.79	0.0	0.05	13.68	0.00	1.840	6.47	0.19	1.5	98.5	0.0	3.40	0.87	0.78	2.35	3.2	0.004	0.80	0.0	0.04	16.74	0.00	2.084	10.02	1.54	2.4	97.6	0.0	1.83	2.27	0.87	0.84	1.66	23913	2954	9	0	4	0	0	logfile
✔	7USF	26737	2024-02-17	2022-04-25	3.5	4.05	3.59	3.9	0.003	0.55	0.0	0.04	19.62	0.00	2.017	10.80	0.12	2.5	97.5	0.0	0.79	0.79	0.78	2.43	3.9	0.003	0.60	0.0	0.04	20.90	0.00	2.076	10.14	2.53	3.4	96.6	0.0	0.90	1.43	0.81	0.82	2.09	18988	1984	22	152	10	0	0	logfile
✔	7XMF	33295	2024-02-15	2022-04-25	3.07	3.32	3.09	3.3	0.008	0.87	3.0	0.05	16.55	0.01	1.953	16.26	3.37	5.6	94.1	0.4	-2.41	0.55	0.73	2.36	3.3	0.004	0.90	0.0	0.04	17.29	0.00	2.098	10.05	3.21	5.1	94.8	0.1	0.12	0.54	0.61	0.81	2.11	11709	1433	7	0	11	0	0	logfile
✔	7XMG	33296	2024-02-15	2022-04-25	3.09	3.36	3.11	3.4	0.006	0.85	1.0	0.05	16.61	0.01	2.017	20.33	4.46	7.3	92.4	0.3	-2.84	0.50	0.67	1.81	3.4	0.003	0.66	0.0	0.04	17.18	0.00	2.121	12.24	3.36	5.8	94.2	0.0	-0.41	1.16	0.55	0.75	1.41	11692	1431	7	0	10	0	0	logfile
✔	7ZoD	14846	2024-02-20	2022-04-25	2.56	2.48	2.58	2.7	0.010	0.86	4.0	0.06	24.54	0.01	1.835	8.12	3.44	6.1	93.6	0.3	-1.02	0.47	0.64	2.79	2.6	0.007	0.79	0.0	0.05	24.20	0.01	2.053	7.63	7.88	5.3	94.6	0.1	-0.74	0.51	0.70	0.87	3.66	90702	3113	31	3096	0	0	0	logfile
✔	7USD	26733	2024-02-18	2022-04-25	3.0	3.11	3.03	3.0	0.004	0.70	2.0	0.05	14.52	0.00	2.207	7.15	0.15	1.8	98.2	0.0	3.36	0.80	0.81	2.15	3.0	0.003	0.55	0.0	0.04	17.16	0.00	1.950	5.80	2.16	2.0	98.0	0.0	2.42	1.08	0.87	0.89	2.26	23226	2864	6	0	2	0	0	logfile
✔	7XM9	33292	2024-02-15	2022-04-25	3.22	3.46	3.25	3.5	0.007	0.86	3.0	0.05	17.02	0.01	1.933	19.20	3.45	4.7	95.0	0.3	-1.91	0.54	0.72	1.74	3.5	0.003	0.63	0.0	0.04	17.35	0.00	2.147	8.13	4.40	5.1	94.9	0.0	0.58	1.16	0.53	0.78	1.83	12490	1523	7	0	11	0	0	logfile
✔	7USC	26732	2024-02-18	2022-04-25	3.0	3.26	2.98	3.1	0.007	0.62	0.0	0.04	14.12	0.00	2.130	6.55	0.00	3.0	97.0	0.0	1.36	0.90	0.87	2.78	3.1	0.003	0.53	0.0	0.04	16.33	0.00	2.224	4.50	0.82	1.4	98.6	0.0	2.86	0.50	0.91	0.90	2.33	21709	2673	5	0	0	0	0	logfile
✔	7ZoA	14845	2024-02-14	2022-04-24	4.0	4.31	4.04	4.2	0.004	0.81	1.0	0.07	24.01	0.00	2.176	9.69	0.11	3.3	96.4	0.4	0.93	0.64	0.75	—	4.2	0.003	0.74	0.0	0.04	18.36	0.00	2.134	10.90	3.20	3.6	96.1	0.3	1.55	0.79	0.69	0.80	—	9042	1140	3	0	18	0	0	logfile

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