Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XK0	33239	2024-02-14	2022-04-19	3.59	3.85	3.58	3.7	0.011	0.96	0.0	0.06	19.03	0.01	2.206	10.11	5.36	10.4	89.6	0.0	-5.27	0.81	0.86	2.36	3.7	0.003	0.60	0.0	0.04	18.45	0.00	2.147	5.62	1.58	5.3	94.7	0.0	-1.59	0.52	0.80	0.84	1.77	9208	983	2	70	1	0	0	logfile
✔	7XK7	33246	2024-02-16	2022-04-19	2.9	3.16	2.96	3.2	0.008	1.04	11.0	0.06	18.32	0.01	1.978	5.02	0.70	2.5	97.4	0.1	-2.49	0.68	0.88	4.09	3.2	0.003	0.56	0.0	0.04	16.22	0.00	2.193	5.26	1.47	2.8	97.2	0.0	0.28	0.96	0.64	0.88	3.71	15186	1921	14	0	13	35	0	logfile
✔	7XJK	33230	2024-02-14	2022-04-18	3.3	3.56	3.42	3.5	0.005	0.65	0.0	0.04	13.52	0.01	2.172	11.97	0.00	2.7	97.3	0.0	0.32	0.64	0.77	2.84	3.6	0.002	0.56	0.0	0.04	15.77	0.00	2.188	9.82	2.29	3.0	97.0	0.0	1.04	0.37	0.63	0.78	2.13	8570	1139	6	0	0	0	0	logfile
✔	7XJL	33231	2024-02-14	2022-04-18	3.5	3.88	3.61	3.8	0.002	0.61	0.0	0.04	13.57	0.00	2.168	10.62	0.00	2.4	97.6	0.0	0.78	0.63	0.77	1.72	3.8	0.003	0.68	0.0	0.04	16.17	0.00	2.163	15.30	3.24	2.8	97.2	0.0	0.89	0.45	0.62	0.78	1.73	8527	1137	6	0	0	0	0	logfile
✔	7UPX	26677	2024-02-13	2022-04-18	3.2	3.46	—	3.4	0.013	1.88	4.0	0.11	14.71	0.01	2.176	5.28	2.20	5.4	93.2	1.4	-0.66	0.64	0.88	3.81	3.4	0.004	0.71	0.0	0.04	14.93	0.00	2.111	7.24	2.94	4.5	95.4	0.2	0.24	0.47	0.64	0.88	3.27	4930	635	4	0	3	0	0	logfile
✔	7XJH	33227	2024-02-13	2022-04-18	3.3	2.96	3.18	3.2	0.003	0.58	0.0	0.04	14.02	0.00	2.218	7.28	0.00	3.1	96.9	0.0	0.45	0.60	0.78	2.05	3.2	0.002	0.52	0.0	0.04	15.49	0.00	2.109	7.54	2.21	2.9	97.1	0.0	0.85	0.37	0.63	0.81	2.20	7832	1027	5	0	1	0	0	logfile
✔	7UPW	26676	2024-02-23	2022-04-18	2.7	2.85	—	2.9	0.014	1.87	23.0	0.11	16.96	0.01	1.984	4.67	2.59	5.9	93.0	1.1	-1.40	0.67	0.79	4.29	2.9	0.005	0.77	0.0	0.05	15.27	0.00	2.107	7.80	2.94	4.1	95.8	0.2	-0.18	1.29	0.69	0.87	3.85	37893	4674	48	0	123	0	0	logfile
✔	7XJX	33236	2024-02-13	2022-04-18	2.7	2.78	1.76	2.9	0.008	0.81	0.0	0.06	12.77	0.00	2.438	12.63	0.00	16.4	83.6	0.0	-5.02	0.48	0.81	4.92	2.9	0.004	0.77	0.0	0.05	14.58	0.00	2.392	9.10	4.44	12.3	87.7	0.0	-3.52	1.16	0.45	0.81	4.78	2628	378	6	0	0	0	0	logfile
✔	7UPY	26678	2024-02-23	2022-04-18	3.1	3.18	—	3.2	0.014	1.86	17.0	0.11	15.61	0.01	1.682	5.08	2.22	5.7	93.4	0.9	-1.19	0.67	0.77	3.76	3.2	0.005	0.74	0.0	0.05	15.21	0.00	2.154	8.69	2.30	4.9	95.0	0.1	-0.28	0.58	0.73	0.85	3.07	37312	4619	46	0	109	0	0	logfile
✔	7XJJ	33229	2024-02-14	2022-04-18	3.3	3.59	3.37	3.6	0.007	0.88	5.0	0.07	14.11	0.01	1.771	16.14	0.96	5.1	94.9	0.0	0.40	0.60	0.72	2.40	3.6	0.004	0.61	0.0	0.04	16.01	0.00	2.157	13.64	1.92	5.3	94.7	0.0	0.45	0.38	0.58	0.73	1.88	8710	1126	6	0	0	0	0	logfile
✔	7XJP	33233	2024-02-17	2022-04-18	2.71	3.46	2.74	3.2	0.005	0.80	0.0	0.05	13.66	0.00	2.215	12.28	0.82	3.6	96.3	0.1	-1.81	0.78	0.70	2.56	3.2	0.003	0.67	0.0	0.04	15.79	0.00	2.219	10.76	1.64	1.9	98.1	0.0	0.83	0.68	0.83	0.82	1.93	8930	1089	4	0	3	0	0	logfile
✔	7XJG	33226	2024-02-15	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	24.50	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.59	0.0	0.04	23.94	0.00	2.108	7.31	5.53	4.3	95.7	0.0	0.45	0.24	0.79	0.80	2.70	13167	1066	12	216	2	0	0	logfile
✔	7UPT	26675	2024-02-15	2022-04-16	3.5	4.20	3.67	4.0	0.004	0.95	0.0	0.13	19.59	0.00	1.944	10.54	11.28	7.3	92.6	0.1	-3.04	0.80	0.78	1.19	4.0	0.004	0.76	0.0	0.04	19.12	0.00	1.780	15.30	8.08	8.6	91.3	0.1	-0.72	0.69	0.81	0.82	1.26	13567	1692	13	0	21	0	0	logfile
✔	7UPN	26673	2024-02-14	2022-04-16	3.5	4.29	3.52	4.0	0.002	0.53	0.0	0.04	14.66	0.00	2.284	6.79	0.00	7.4	92.3	0.4	-1.27	0.86	0.78	1.41	4.0	0.004	0.69	0.0	0.04	16.64	0.01	2.215	11.18	1.27	8.7	90.6	0.7	-1.93	1.27	0.87	0.82	1.77	8872	1100	10	0	2	0	0	logfile
✔	7UPR	26674	2024-02-15	2022-04-16	3.2	3.90	3.36	3.8	0.004	0.80	0.0	0.04	15.82	0.00	2.062	7.72	4.18	7.1	92.9	0.0	-3.02	0.74	0.78	1.45	3.8	0.003	0.64	0.0	0.04	17.39	0.00	1.911	9.51	4.18	8.3	91.7	0.0	0.01	0.50	0.75	0.81	1.22	12780	1678	12	0	19	0	0	logfile
✔	7ZLK	14783	2024-02-19	2022-04-15	3.99	4.35	4.04	4.2	0.021	1.85	0.0	0.13	14.46	0.01	2.348	0.97	0.08	2.9	97.1	0.0	0.34	0.76	0.76	1.82	4.2	0.004	0.77	0.0	0.05	14.89	0.00	2.134	13.91	3.13	5.9	94.0	0.1	-0.36	1.52	0.78	0.81	1.42	23518	2836	35	0	98	0	0	logfile
✔	7UPH	26666	2024-02-22	2022-04-15	4.18	5.35	4.33	4.2	0.007	1.00	1.0	0.05	25.16	0.02	1.193	122.79	0.02	12.5	86.5	1.0	-2.90	0.63	0.35	—	4.3	0.007	0.91	0.0	0.04	24.66	0.01	1.166	113.94	0.04	16.7	82.6	0.6	-3.11	1.41	0.87	0.78	—	141080	5442	49	4556	0	0	625	logfile
✔	7UPL	26669	2024-02-21	2022-04-15	4.1	4.41	4.14	4.2	0.004	0.68	0.0	0.05	14.03	0.00	2.086	7.13	0.00	6.4	93.6	0.0	-1.29	0.78	0.72	—	4.2	0.003	0.62	0.0	0.05	13.48	0.00	2.070	7.03	0.03	4.8	95.2	0.0	-1.05	0.56	0.81	0.81	—	32145	4031	23	0	54	0	0	logfile
✔	7XJ6	33220	2024-02-21	2022-04-15	3.29	3.86	3.38	3.6	0.004	0.61	0.0	0.05	14.24	0.00	2.176	7.24	0.11	3.6	96.4	0.0	-0.01	0.81	0.83	2.18	3.6	0.005	0.62	0.0	0.05	14.80	0.00	2.142	9.33	2.12	5.2	94.8	0.0	-0.26	1.22	0.81	0.86	2.34	31949	4020	28	0	43	0	0	logfile
✔	7ZLG	14779	2024-02-14	2022-04-15	2.72	2.42	2.69	2.6	0.004	0.71	0.0	0.05	13.43	0.00	2.187	7.18	0.66	4.4	95.2	0.4	0.03	0.69	0.83	2.76	2.4	0.006	0.72	0.0	0.05	15.23	0.01	2.014	8.60	1.04	6.1	93.7	0.2	0.05	0.75	0.67	0.84	2.96	9618	1226	7	0	0	10	0	logfile

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