Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZLi	14781	2024-02-14	2022-04-15	2.99	3.26	3.03	3.3	0.007	1.01	2.0	0.05	13.51	0.00	1.834	27.48	0.96	6.5	93.0	0.4	0.03	0.65	0.83	2.90	3.3	0.005	0.68	0.0	0.05	15.47	0.00	2.022	8.39	2.29	6.1	93.8	0.1	0.50	0.39	0.64	0.85	2.64	9582	1218	4	0	1	13	0	logfile
✔	7ZLV	14790	2024-02-15	2022-04-15	4.22	3.64	4.54	3.6	0.003	0.60	0.0	0.05	13.60	0.01	1.813	25.16	0.00	10.5	89.3	0.2	-3.64	0.70	0.68	—	3.6	0.003	0.70	0.0	0.05	13.80	0.00	2.139	20.89	0.00	9.3	90.5	0.2	-3.20	0.50	0.71	0.69	—	12234	1581	3	0	0	0	0	logfile
✔	7XJA	33223	2024-02-13	2022-04-15	3.5	3.35	3.43	3.4	0.003	0.60	0.0	0.04	13.73	0.00	2.182	9.41	0.00	1.5	98.5	0.0	1.81	0.57	0.72	3.01	3.4	0.003	0.61	0.0	0.04	16.03	0.00	2.241	9.41	2.87	3.1	96.9	0.0	2.48	1.79	0.64	0.81	3.27	7276	944	2	0	0	0	0	logfile
✔	7UPK	26668	2024-02-16	2022-04-15	2.8	3.03	2.80	3.0	0.003	0.57	0.0	0.04	12.65	0.00	2.156	5.84	0.06	1.7	98.3	0.0	-0.01	0.70	0.81	5.07	3.1	0.003	0.55	0.0	0.04	15.74	0.00	2.159	7.49	3.06	1.7	98.3	0.0	0.42	0.90	0.69	0.87	4.95	15276	1983	9	0	0	0	0	logfile
✔	7XJ9	33222	2024-02-14	2022-04-15	3.27	3.75	3.48	3.6	0.003	0.57	0.0	0.04	12.83	0.00	2.122	7.72	0.00	5.4	94.6	0.0	-1.12	0.68	0.80	2.93	3.6	0.003	0.59	0.0	0.04	14.97	0.00	2.091	7.97	2.95	5.3	94.7	0.0	-1.01	0.40	0.66	0.82	2.52	8375	1074	8	0	0	0	0	logfile
✔	7ZLK	14783	2024-02-19	2022-04-15	3.99	4.35	4.04	4.2	0.021	1.85	0.0	0.13	14.46	0.01	2.348	0.97	0.08	2.9	97.1	0.0	0.34	0.76	0.76	1.82	4.2	0.004	0.77	0.0	0.05	14.89	0.00	2.134	13.91	3.13	5.9	94.0	0.1	-0.36	1.52	0.78	0.81	1.42	23518	2836	35	0	98	0	0	logfile
✔	7UPH	26666	2024-02-22	2022-04-15	4.18	5.35	4.33	4.2	0.007	1.00	1.0	0.05	25.16	0.02	1.193	122.79	0.02	12.5	86.5	1.0	-2.90	0.63	0.35	—	4.3	0.007	0.91	0.0	0.04	24.66	0.01	1.166	113.94	0.04	16.7	82.6	0.6	-3.11	1.41	0.87	0.78	—	141080	5442	49	4556	0	0	625	logfile
✔	7ZLG	14779	2024-02-14	2022-04-15	2.72	2.42	2.69	2.6	0.004	0.71	0.0	0.05	13.43	0.00	2.187	7.18	0.66	4.4	95.2	0.4	0.03	0.69	0.83	2.76	2.4	0.006	0.72	0.0	0.05	15.23	0.01	2.014	8.60	1.04	6.1	93.7	0.2	0.05	0.75	0.67	0.84	2.96	9618	1226	7	0	0	10	0	logfile
✔	7ZLA	14778	2024-02-14	2022-04-14	3.99	4.22	3.89	4.1	0.008	0.83	0.0	0.05	21.77	0.01	2.198	18.63	0.00	6.9	93.1	0.0	-1.94	0.71	0.67	0.80	4.1	0.003	0.63	0.0	0.04	22.84	0.00	2.154	11.42	3.43	5.0	94.8	0.1	-1.21	0.49	0.70	0.66	0.96	8624	822	4	92	0	0	0	logfile
✔	7XiZ	33213	2024-02-13	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	19.02	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.83	0.0	0.05	18.98	0.01	2.234	13.17	5.96	15.8	83.4	0.8	-3.73	1.54	0.37	0.73	1.80	2161	267	1	0	2	0	0	logfile
✔	7XJ1	33216	2024-02-17	2022-04-14	2.93	3.14	2.97	3.1	0.015	0.96	1.0	0.04	17.49	0.00	2.200	12.55	4.02	6.8	93.2	0.0	-3.39	0.66	0.81	2.69	3.2	0.003	0.58	0.0	0.04	17.42	0.00	2.162	8.93	3.57	5.7	94.3	0.0	-0.40	1.12	0.68	0.84	3.03	18910	2444	8	0	20	0	0	logfile
✔	7XiX	33211	2024-02-20	2022-04-14	3.25	3.46	3.27	3.4	0.004	0.61	0.0	0.05	15.68	0.00	2.195	5.94	0.00	5.4	94.6	0.0	-1.30	0.76	0.81	2.84	3.5	0.003	0.55	0.0	0.05	14.85	0.00	2.097	5.52	1.89	5.3	94.7	0.0	-1.09	1.11	0.80	0.86	2.43	26586	3285	24	0	66	0	0	logfile
✔	7UPB	26660	2024-02-16	2022-04-14	3.0	3.26	3.02	3.3	0.003	0.56	0.0	0.05	14.22	0.00	2.221	4.23	0.68	1.9	98.1	0.0	0.44	0.71	0.84	4.00	3.3	0.003	0.53	0.0	0.04	15.10	0.00	2.170	6.16	1.99	2.1	97.9	0.0	0.72	0.27	0.71	0.85	4.08	15654	2025	12	0	3	0	0	logfile
✔	7UP9	26658	2024-02-15	2022-04-14	2.9	3.12	2.84	3.1	0.003	0.61	0.0	0.05	12.63	0.00	2.192	2.37	0.51	2.7	97.3	0.0	0.12	0.80	0.85	4.34	3.1	0.002	0.50	0.0	0.04	14.78	0.00	2.188	2.50	1.30	2.9	97.1	0.0	0.82	0.75	0.82	0.91	3.36	12168	1556	9	0	14	0	0	logfile
✔	7XiW	33210	2024-02-20	2022-04-14	3.62	4.05	3.90	3.9	0.003	0.59	0.0	0.05	13.91	0.00	1.353	7.44	0.03	6.3	93.3	0.4	-1.29	0.74	0.73	1.53	3.9	0.003	0.62	0.0	0.04	15.18	0.00	2.142	7.63	1.74	6.3	93.2	0.4	-0.98	0.81	0.75	0.79	1.55	26624	3310	19	0	56	0	0	logfile
✔	7XJ0	33214	2024-02-17	2022-04-14	2.53	2.75	2.61	2.8	0.020	1.36	17.0	0.08	18.35	0.01	2.206	19.02	6.56	7.0	93.0	0.0	-3.52	0.59	0.76	3.16	2.8	0.003	0.58	0.0	0.04	17.51	0.00	2.187	11.40	2.07	5.6	94.4	0.0	-0.73	0.38	0.60	0.78	2.85	18791	2428	8	0	24	0	0	logfile
✔	7UPD	26662	2024-02-16	2022-04-14	2.4	2.56	2.38	2.5	0.003	0.57	0.0	0.05	15.74	0.00	2.222	1.74	1.18	1.7	98.3	0.0	0.86	0.78	0.89	5.05	2.5	0.002	0.53	0.0	0.05	16.16	0.00	2.144	2.16	2.93	1.9	98.1	0.0	0.99	0.22	0.78	0.89	4.90	15801	2016	12	0	12	0	0	logfile
✔	7UoW	26656	2024-02-22	2022-04-14	4.4	4.61	4.40	4.4	0.003	0.64	0.0	0.05	13.68	0.00	2.097	14.31	0.14	4.5	95.3	0.1	-1.07	0.70	0.57	—	4.4	0.005	0.74	0.0	0.05	13.46	0.01	2.066	18.16	0.00	7.8	92.1	0.1	-1.56	2.24	0.79	0.78	—	32566	4109	22	0	47	0	0	logfile
✔	7XJ2	33217	2024-02-17	2022-04-14	3.64	3.78	3.59	3.7	0.019	0.90	0.0	0.04	16.46	0.01	2.203	16.54	3.75	7.0	93.0	0.0	-3.17	0.67	0.80	2.02	3.7	0.003	0.66	0.0	0.04	17.68	0.00	2.164	12.00	3.86	4.6	95.4	0.0	0.45	0.56	0.69	0.80	1.29	18438	2428	8	0	4	0	0	logfile
✔	7UPA	26659	2024-02-16	2022-04-14	2.5	2.96	2.48	2.8	0.003	0.65	0.0	0.05	14.86	0.00	2.227	1.94	0.96	3.8	96.2	0.0	0.34	0.83	0.85	3.76	2.8	0.005	0.68	0.0	0.05	15.47	0.00	2.120	2.96	2.99	4.2	95.8	0.0	0.32	0.24	0.84	0.88	3.60	15745	2016	12	0	12	0	0	logfile

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