Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8THR	41269	2024-02-13	2023-07-17	3.12	2.56	3.14	3.6	0.013	1.92	1.0	0.11	14.13	0.01	2.537	4.34	0.96	2.1	97.9	0.0	-3.14	0.77	0.75	2.62	3.6	0.004	0.82	0.0	0.04	15.39	0.01	2.091	12.87	1.92	3.4	96.6	0.0	-1.36	0.89	0.76	0.74	1.48	2937	389	2	0	1	0	0	logfile
✔	8K47	36879	2024-02-20	2023-07-17	3.54	4.06	3.41	3.7	0.006	0.91	2.0	0.07	19.11	0.02	2.184	17.62	5.01	9.4	89.0	1.5	-2.01	0.83	0.81	1.32	3.7	0.003	0.65	0.0	0.04	17.17	0.00	2.160	14.06	3.25	8.2	91.6	0.2	-1.52	2.50	0.84	0.83	1.43	26919	3379	20	0	50	0	0	logfile
✔	8K3T	36859	2024-02-14	2023-07-17	3.57	4.21	3.75	4.1	0.009	0.93	0.0	0.05	15.00	0.00	2.225	12.40	1.12	4.5	95.5	0.0	0.41	0.60	0.77	1.00	4.1	0.004	0.56	0.0	0.04	15.82	0.00	2.141	9.58	2.35	3.4	96.6	0.0	1.20	1.19	0.59	0.77	0.59	9410	1254	4	2	6	0	0	logfile
✔	8K3U	36861	2024-02-14	2023-07-17	3.06	3.51	3.21	3.5	0.009	1.07	0.0	0.06	16.05	0.00	2.072	18.03	0.73	5.9	94.0	0.2	-1.45	0.55	0.67	2.06	3.5	0.004	0.63	0.0	0.04	15.88	0.00	2.102	10.22	2.68	3.0	96.9	0.1	0.59	1.20	0.50	0.67	1.63	8914	1194	4	2	8	0	0	logfile
✔	8PUW	17949	2024-02-15	2023-07-17	3.01	3.27	3.01	3.2	0.004	0.69	0.0	0.04	12.23	0.01	2.276	3.16	0.00	1.6	98.4	0.0	0.73	0.85	0.88	3.21	3.2	0.004	0.55	0.0	0.04	13.18	0.00	2.190	5.41	1.01	1.6	98.4	0.0	2.18	0.26	0.87	0.90	2.89	11160	1442	4	0	0	0	0	logfile
✔	8PVH	17966	2024-02-16	2023-07-17	2.9	2.53	2.93	3.0	0.010	1.69	0.0	0.08	15.36	0.01	2.437	0.56	1.49	2.0	97.8	0.2	-1.08	0.53	0.78	4.67	2.9	0.003	0.57	0.0	0.04	17.52	0.00	2.269	8.02	2.79	2.4	97.6	0.0	1.27	1.03	0.68	0.84	4.21	15172	1972	8	0	4	0	0	logfile
✔	8PVA	17959	2024-02-22	2023-07-17	4.5	3.88	4.43	3.6	0.011	1.59	4.0	0.10	22.95	0.02	1.936	1.56	3.61	3.6	96.2	0.2	-1.53	0.82	0.74	—	3.6	0.004	0.70	0.0	0.04	22.86	0.01	1.992	18.10	0.13	5.5	94.4	0.1	-1.07	4.19	0.85	0.81	—	141565	5585	58	4555	4	0	0	logfile
✔	8PVG	17965	2024-02-24	2023-07-17	3.4	3.70	3.66	3.6	0.009	1.54	12.0	0.08	14.00	0.01	2.147	5.76	1.10	4.6	95.4	0.0	-0.95	0.80	0.84	3.52	3.6	0.003	0.65	0.0	0.04	15.73	0.00	2.181	10.09	1.08	3.6	96.4	0.0	1.29	1.69	0.87	0.89	2.53	40728	5220	12	0	0	0	0	logfile
✔	8PVF	17964	2024-02-14	2023-07-17	2.9	2.56	2.92	3.1	0.010	1.80	4.0	0.09	14.89	0.01	2.413	0.60	1.12	4.2	95.5	0.3	-1.16	0.54	0.80	4.62	3.1	0.005	0.61	0.0	0.05	16.78	0.00	2.193	6.15	5.11	3.6	96.1	0.3	-0.17	1.76	0.69	0.88	4.89	10140	1348	8	0	4	0	0	logfile
✔	8K3Y	36867	2024-02-22	2023-07-17	4.42	8.76	4.94	4.5	0.006	1.15	0.0	0.07	14.64	0.01	2.232	17.66	0.05	6.9	93.1	0.0	-3.10	0.86	0.60	—	4.5	0.003	0.75	0.0	0.05	14.30	0.01	1.984	34.76	0.00	7.5	92.5	0.0	-1.58	0.45	0.89	0.72	—	34589	4396	10	0	4	0	0	logfile
✔	8K3V	36862	2024-02-15	2023-07-17	3.1	3.38	3.15	3.3	0.008	1.07	2.0	0.07	17.59	0.01	2.227	8.20	4.91	5.4	94.6	0.0	-0.31	0.65	0.81	3.01	3.3	0.003	0.51	0.0	0.04	15.65	0.00	2.263	5.46	1.44	2.7	97.3	0.0	1.86	0.51	0.65	0.83	3.02	11248	1400	4	0	6	0	0	logfile
✔	8PV5	17954	2024-02-23	2023-07-17	2.86	2.91	—	2.9	0.006	0.73	0.0	0.04	21.28	0.02	2.121	4.21	0.01	1.7	98.3	0.0	0.06	0.86	0.81	3.37	2.9	0.006	0.79	0.0	0.04	21.73	0.01	1.854	9.57	1.99	2.8	97.2	0.0	0.60	1.12	0.88	0.85	3.21	144398	9204	62	3331	10	3	0	logfile
✔	8K45	36877	2024-02-20	2023-07-17	3.66	4.22	3.69	3.9	0.005	0.71	1.0	0.05	17.55	0.01	1.989	10.32	2.13	7.1	92.4	0.5	-0.91	0.84	0.86	1.55	3.9	0.003	0.58	0.0	0.04	17.01	0.00	2.032	9.49	3.95	5.3	94.6	0.2	-0.51	0.32	0.84	0.85	1.58	26877	3338	18	0	48	0	0	logfile
✔	8PVi	17967	2024-02-21	2023-07-17	3.7	3.60	3.68	3.7	0.010	1.62	0.0	0.08	15.33	0.01	2.334	1.37	1.13	1.5	98.4	0.1	0.10	0.76	0.77	2.27	3.7	0.003	0.61	0.0	0.04	16.42	0.00	2.090	11.07	1.38	2.3	97.7	0.0	0.56	0.62	0.84	0.83	1.90	30696	4068	6	0	0	0	0	logfile
✔	8K46	36878	2024-02-20	2023-07-17	3.37	3.91	3.31	3.6	0.007	0.93	2.0	0.07	19.29	0.02	2.197	18.65	6.08	11.2	87.1	1.7	-2.62	0.84	0.85	1.62	3.6	0.004	0.69	0.0	0.04	17.14	0.00	2.055	14.97	3.54	9.3	90.4	0.3	-1.70	1.07	0.86	0.87	1.70	28908	3620	21	0	49	0	0	logfile
✔	8K4B	36882	2024-02-14	2023-07-17	3.9	4.47	4.31	4.4	0.007	1.40	0.0	0.07	15.60	0.01	2.010	8.38	0.91	7.0	92.8	0.2	-3.82	0.66	0.75	1.21	4.3	0.003	0.77	0.0	0.04	16.73	0.00	1.996	14.28	3.84	7.0	93.0	0.0	-0.85	1.82	0.68	0.80	1.26	8918	1126	4	0	4	0	0	logfile
✔	8K3X	36864	2024-02-14	2023-07-17	2.86	3.04	2.99	3.1	0.012	0.94	0.0	0.06	12.85	0.01	2.196	4.37	0.20	5.2	94.8	0.0	-0.82	0.56	0.78	2.78	3.0	0.005	0.59	0.0	0.04	15.06	0.00	2.201	4.53	2.39	3.4	96.6	0.0	1.23	1.22	0.57	0.81	2.83	10386	1386	4	0	2	0	0	logfile
✔	8PVD	17962	2024-02-16	2023-07-17	3.4	3.20	3.34	3.4	0.012	1.85	4.0	0.09	15.25	0.01	2.473	0.43	1.39	3.8	96.0	0.2	-1.14	0.68	0.79	4.47	3.3	0.002	0.59	0.0	0.04	16.49	0.00	2.283	7.76	0.93	3.4	96.7	0.0	0.68	1.01	0.83	0.87	4.21	16512	2008	8	0	8	0	0	logfile
✔	8PVB	17960	2024-02-17	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.004	0.61	0.0	0.04	15.10	0.00	0.000	6.41	1.77	1.2	98.8	0.0	0.62	1.00	0.73	0.84	3.89	19225	2275	25	0	80	0	0	logfile
✔	8K3Q	36856	2024-02-15	2023-07-16	2.6	2.98	2.74	2.9	0.008	0.87	0.0	0.05	14.74	0.01	2.259	4.57	1.89	3.4	96.6	0.0	0.38	0.66	0.82	3.35	2.9	0.003	0.49	0.0	0.04	15.93	0.00	2.275	4.48	1.37	2.5	97.5	0.0	1.65	1.19	0.66	0.83	3.43	11365	1448	4	0	2	0	0	logfile

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