Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K3R	36857	2024-02-15	2023-07-16	3.51	4.07	3.61	3.9	0.008	0.86	0.0	0.05	14.85	0.01	2.259	4.36	1.92	2.8	97.2	0.0	0.53	0.61	0.73	1.12	3.9	0.003	0.60	0.0	0.04	16.10	0.00	2.254	7.88	0.96	3.1	96.9	0.0	1.41	0.83	0.60	0.77	0.71	11061	1404	4	0	2	0	0	logfile
✔	8K3P	36855	2024-02-14	2023-07-16	3.64	4.09	3.71	4.0	0.010	0.93	0.0	0.06	15.19	0.00	2.293	9.47	3.22	4.5	95.5	0.0	0.23	0.64	0.79	1.60	4.0	0.002	0.51	0.0	0.04	15.63	0.00	2.207	6.37	2.68	2.3	97.7	0.0	2.15	1.24	0.64	0.81	1.92	9906	1320	4	0	4	0	0	logfile
✔	8K3Q	36856	2024-02-15	2023-07-16	2.6	2.98	2.74	2.9	0.008	0.87	0.0	0.05	14.74	0.01	2.259	4.57	1.89	3.4	96.6	0.0	0.38	0.66	0.82	3.35	2.9	0.003	0.49	0.0	0.04	15.93	0.00	2.275	4.48	1.37	2.5	97.5	0.0	1.65	1.19	0.66	0.83	3.43	11365	1448	4	0	2	0	0	logfile
✔	8THi	41265	2024-02-14	2023-07-16	3.36	3.84	3.37	3.7	0.003	0.51	0.0	0.04	13.99	0.00	2.209	3.02	0.29	1.8	98.2	0.0	2.97	0.71	0.80	1.36	3.7	0.002	0.58	0.0	0.04	15.25	0.00	2.154	6.14	1.38	1.9	98.1	0.0	2.30	1.12	0.72	0.85	1.70	9519	1224	4	0	4	0	0	logfile
✔	8PTW	17879	2024-02-16	2023-07-15	2.91	3.20	2.93	3.1	0.004	0.78	0.0	0.05	11.31	0.01	2.299	3.99	0.00	1.8	98.2	0.0	0.35	0.78	0.81	3.44	3.1	0.004	0.59	0.0	0.04	13.74	0.01	2.169	7.21	0.95	1.6	98.4	0.0	2.05	0.35	0.79	0.84	2.79	14242	1878	4	0	0	0	0	logfile
✔	8K39	36848	2024-02-17	2023-07-14	4.0	3.96	3.71	3.9	0.005	0.69	7.0	0.05	14.31	0.01	2.196	7.53	0.24	5.7	94.0	0.3	-0.79	0.61	0.85	—	3.9	0.004	0.62	0.0	0.04	16.45	0.00	2.125	8.65	3.33	6.2	93.7	0.1	-0.84	0.33	0.62	0.85	—	124618	15849	42	0	0	0	0	logfile
✔	8K34	36843	2024-02-13	2023-07-14	2.81	3.42	2.84	3.2	0.004	0.74	0.0	0.04	17.75	0.00	2.000	16.66	2.07	3.9	96.1	0.0	-0.23	0.68	0.68	1.79	3.2	0.004	0.69	0.0	0.04	17.99	0.00	1.971	17.36	3.75	5.1	94.9	0.0	-0.21	0.38	0.69	0.69	1.48	7187	863	4	4	1	0	0	logfile
✔	8K38	36847	2024-02-25	2023-07-14	3.2	3.30	3.16	3.3	0.003	0.52	1.0	0.04	12.99	0.00	2.215	4.22	0.12	1.7	98.3	0.0	1.76	0.74	0.88	3.22	3.3	0.005	0.54	0.0	0.04	15.60	0.00	2.149	4.00	2.01	1.9	98.1	0.0	1.53	0.46	0.74	0.91	2.77	50172	6396	24	0	0	0	0	logfile
✔	8PTH	17871	2024-02-17	2023-07-14	2.73	2.59	2.66	2.8	0.002	0.44	0.0	0.04	17.86	0.00	2.072	3.02	1.88	4.8	95.2	0.0	0.96	0.74	0.89	3.83	2.8	0.002	0.46	0.0	0.04	17.83	0.00	2.082	3.07	1.67	4.7	95.3	0.0	0.90	0.89	0.73	0.89	3.88	18236	1104	7	27	1	1	8991	logfile
✔	8K2W	36841	2024-02-13	2023-07-14	3.0	3.14	2.99	3.2	0.009	0.92	0.0	0.04	15.43	0.02	2.294	5.99	0.00	4.2	95.8	0.0	0.73	0.56	0.80	2.41	3.2	0.003	0.59	0.0	0.04	16.80	0.00	2.322	4.89	1.93	4.8	95.2	0.0	0.76	0.46	0.54	0.81	1.59	3143	386	3	0	4	0	0	logfile
✔	8K35	36844	2024-02-23	2023-07-14	3.44	3.71	3.05	3.7	0.004	0.60	0.0	0.04	12.73	0.00	2.079	5.25	0.00	2.7	97.3	0.0	-1.02	0.81	0.87	3.12	3.7	0.002	0.50	0.0	0.04	14.48	0.00	2.089	4.56	1.90	2.7	97.3	0.0	-0.72	0.31	0.79	0.88	2.42	40353	5184	27	0	3	0	0	logfile
✔	8PTJ	17872	2024-02-17	2023-07-14	2.86	2.81	2.75	2.9	0.004	0.48	0.0	0.04	17.88	0.00	2.035	3.52	2.82	4.5	95.5	0.0	1.19	0.76	0.89	3.52	2.8	0.003	0.48	0.0	0.04	17.84	0.00	2.071	3.74	2.82	5.0	95.0	0.0	1.23	0.90	0.75	0.90	3.39	17874	1102	7	15	1	2	8841	logfile
✔	8K2X	36842	2024-02-14	2023-07-14	3.2	3.52	3.20	3.4	0.003	0.57	0.0	0.04	16.75	0.00	2.283	9.17	0.00	4.6	95.4	0.0	0.69	0.83	0.89	2.38	3.4	0.003	0.57	0.0	0.04	17.17	0.00	2.121	8.49	3.85	5.4	94.6	0.0	0.73	0.24	0.83	0.90	2.55	8900	1138	7	0	1	0	0	logfile
✔	8K37	36846	2024-02-17	2023-07-14	3.5	3.55	3.46	3.6	0.006	0.69	4.0	0.05	13.20	0.00	2.224	5.93	0.41	2.4	97.6	0.0	-0.80	0.70	0.85	2.95	3.5	0.002	0.58	0.0	0.04	15.50	0.00	2.227	6.04	3.12	1.9	98.0	0.0	-0.47	0.54	0.70	0.85	2.30	18528	2394	18	0	0	0	0	logfile
✔	8K36	36845	2024-02-16	2023-07-14	3.48	3.55	3.15	3.6	0.008	0.81	0.0	0.06	12.36	0.00	2.254	3.21	0.80	1.8	98.2	0.0	-0.90	0.72	0.88	3.78	3.6	0.003	0.55	0.0	0.04	14.63	0.00	2.183	3.71	5.07	1.1	98.9	0.0	-0.75	0.54	0.71	0.90	3.08	14172	1848	12	0	0	0	0	logfile
✔	8PT2	17866	2024-02-18	2023-07-13	2.59	2.37	2.57	2.6	0.002	0.45	0.0	0.04	17.64	0.00	1.885	2.40	1.37	3.6	96.4	0.0	1.25	0.74	0.88	4.57	2.6	0.002	0.47	0.0	0.04	17.63	0.00	1.914	2.31	1.63	3.6	96.4	0.0	1.30	0.26	0.74	0.89	4.58	22091	1355	8	27	3	1	10901	logfile
✔	8PT6	17868	2024-02-18	2023-07-13	3.03	2.81	2.82	2.9	0.003	0.55	0.0	0.04	18.46	0.00	1.826	5.57	2.43	3.7	96.2	0.1	1.06	0.74	0.84	3.10	2.9	0.002	0.48	0.0	0.04	17.94	0.00	1.852	5.48	2.24	3.6	96.4	0.1	1.00	0.36	0.75	0.85	3.07	20436	1242	10	28	6	0	10051	logfile
✔	8PSP	17859	2024-02-21	2023-07-13	2.9	2.48	2.81	2.8	0.013	1.86	4.0	0.09	14.80	0.01	2.135	2.92	0.89	5.5	94.1	0.3	-3.17	0.65	0.88	3.89	2.8	0.003	0.57	0.0	0.04	16.07	0.00	2.139	6.08	1.14	2.4	97.6	0.0	1.08	0.41	0.64	0.87	3.27	29695	3788	5	0	2	0	0	logfile
✔	8PSD	17850	2024-02-25	2023-07-13	2.9	3.28	3.06	3.3	0.004	0.51	0.0	0.04	12.30	0.00	2.065	2.20	1.60	4.3	95.7	0.0	-0.16	0.64	0.81	3.11	3.3	0.003	0.65	1.0	0.04	13.55	0.00	1.957	3.50	2.08	4.9	95.1	0.0	-0.44	0.57	0.67	0.83	3.04	48067	3076	6	0	36	0	23498	logfile
✔	8PS9	17847	2024-02-21	2023-07-13	2.9	2.54	2.90	2.8	0.013	1.86	0.0	0.09	14.57	0.01	2.131	2.78	0.37	4.9	94.8	0.2	-2.87	0.65	0.89	4.41	2.8	0.004	0.59	0.0	0.04	15.92	0.00	2.102	7.00	1.08	2.5	97.5	0.0	1.10	1.13	0.65	0.87	3.73	29735	3788	4	0	2	0	0	logfile

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