Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U5J	26352	2024-02-15	2022-03-02	2.96	2.93	3.32	3.0	0.004	0.54	0.0	0.04	10.54	0.01	2.215	9.03	2.15	2.3	97.7	0.0	0.21	0.56	0.72	3.53	3.0	0.004	0.58	0.0	0.04	14.40	0.00	2.165	12.71	2.33	2.6	97.4	0.0	1.03	0.34	0.62	0.77	2.82	10804	1376	8	0	0	284	0	logfile
✔	7U5i	26351	2024-02-19	2022-03-02	3.26	3.14	3.37	3.2	0.002	0.56	0.0	0.04	11.62	0.00	2.219	7.74	2.82	0.8	99.2	0.0	0.87	0.63	0.75	1.83	3.2	0.003	0.66	0.0	0.04	16.11	0.00	2.139	13.74	2.12	2.4	97.6	0.0	0.28	0.63	0.70	0.80	2.18	23539	2904	16	0	0	123	0	logfile
✔	7U5N	26356	2024-02-20	2022-03-02	2.58	2.84	2.74	2.8	0.006	0.92	0.0	0.06	12.59	0.01	2.261	5.51	2.44	2.9	97.1	0.0	0.60	0.66	0.81	4.41	2.8	0.003	0.60	0.0	0.04	15.88	0.00	2.175	10.58	2.86	3.2	96.6	0.2	1.40	0.52	0.71	0.86	3.94	27280	3430	20	0	10	0	0	logfile
✔	7U5M	26355	2024-02-15	2022-03-02	2.28	2.36	2.38	2.4	0.008	0.96	0.0	0.07	14.03	0.00	2.296	4.95	1.87	3.6	96.4	0.0	-0.13	0.74	0.83	6.21	2.4	0.003	0.57	0.0	0.05	16.10	0.00	2.187	5.74	1.31	2.0	98.0	0.0	-0.38	0.32	0.75	0.84	5.71	10627	1328	12	0	4	399	0	logfile
✔	7U5C	26346	2024-02-21	2022-03-02	4.6	4.72	4.53	4.6	0.006	0.87	1.0	0.05	15.09	0.01	1.932	28.65	0.39	16.4	83.6	0.1	-5.85	0.77	0.76	—	4.6	0.003	0.71	0.0	0.04	14.55	0.01	1.968	16.14	0.00	9.2	90.8	0.0	-2.25	0.70	0.77	0.76	—	30077	3740	12	4	5	0	0	logfile
✔	7U5L	26354	2024-02-22	2022-03-02	2.67	2.65	2.91	2.6	0.005	0.58	0.0	0.06	12.29	0.00	1.737	4.42	0.00	1.2	98.8	0.0	4.39	0.71	0.84	4.88	2.6	0.004	0.53	0.0	0.04	17.11	0.00	2.071	5.54	2.34	1.2	98.8	0.0	4.91	0.36	0.76	0.87	4.33	34104	4152	48	0	24	0	0	logfile
✔	7Z3A	14474	2024-02-19	2022-03-02	3.95	4.30	—	4.1	0.024	1.92	0.0	0.16	19.12	0.01	1.982	1.57	0.41	2.7	97.3	0.0	0.25	0.80	0.79	1.88	4.1	0.004	0.91	0.0	0.05	13.34	0.00	2.174	11.94	2.46	5.8	94.2	0.0	-0.36	0.97	0.81	0.83	1.38	24000	2793	69	0	156	0	0	logfile
✔	7U5H	26350	2024-02-23	2022-03-02	3.32	3.20	3.49	3.3	0.006	0.94	12.0	0.07	14.00	0.01	1.424	10.04	5.32	3.2	96.8	0.0	-0.50	0.64	0.77	3.03	3.3	0.006	0.94	4.0	0.05	16.21	0.00	1.886	14.73	4.76	3.9	96.1	0.0	-0.49	1.22	0.66	0.79	2.81	39192	5064	24	0	24	0	0	logfile
✔	7U5S	26357	2024-02-24	2022-03-02	4.16	3.37	4.30	4.2	0.008	1.02	0.0	0.06	14.83	0.01	2.265	9.16	0.00	6.0	94.0	0.0	-4.93	0.57	0.42	—	4.2	0.003	0.75	0.0	0.04	13.47	0.00	2.082	16.77	0.00	5.7	94.3	0.0	-1.27	1.57	0.65	0.62	—	23086	3006	2	0	0	0	0	logfile
✔	7U5D	26348	2024-02-21	2022-03-02	3.52	3.22	3.45	3.4	0.013	1.65	1.0	0.09	15.66	0.01	0.483	10.61	0.20	3.2	96.7	0.2	-0.43	0.86	0.79	3.11	3.4	0.004	0.66	0.0	0.04	17.30	0.00	2.189	5.28	1.28	4.7	95.3	0.0	0.00	0.75	0.89	0.86	2.82	31515	3603	13	141	0	0	0	logfile
✔	7U5T	26358	2024-02-17	2022-03-02	3.43	3.65	3.40	3.5	0.008	1.09	0.0	0.07	13.05	0.01	2.280	7.60	0.10	6.4	93.6	0.0	-5.95	0.59	0.62	1.15	3.5	0.004	0.76	0.0	0.05	15.58	0.00	2.004	13.41	2.26	4.4	95.6	0.0	-1.40	1.10	0.64	0.74	1.43	9093	1190	2	0	0	0	0	logfile
✔	7U5U	26359	2024-02-17	2022-03-02	3.16	3.37	3.21	3.4	0.007	0.88	0.0	0.06	15.34	0.01	2.279	5.12	0.00	5.5	94.5	0.0	-5.67	0.67	0.77	3.21	3.4	0.003	0.63	0.0	0.04	16.34	0.00	2.155	8.66	2.20	3.9	96.1	0.0	-1.13	0.61	0.69	0.81	2.19	10035	1283	2	0	0	0	0	logfile
✔	7X3J	32989	2024-02-15	2022-03-01	4.2	3.84	4.27	3.9	0.004	0.86	1.0	0.05	14.40	0.00	1.136	5.37	0.10	3.2	96.8	0.0	-5.53	0.59	0.53	—	3.9	0.002	0.64	0.0	0.04	14.37	0.00	1.950	11.21	0.03	3.5	96.5	0.0	-0.47	1.58	0.60	0.56	—	63188	8209	32	0	16	0	0	logfile
✔	7U4T	26334	2024-02-18	2022-03-01	3.6	3.59	3.47	3.6	0.006	0.76	0.0	0.05	14.15	0.01	1.919	11.93	0.00	6.3	93.7	0.0	-0.29	0.65	0.66	1.52	3.5	0.004	0.68	0.0	0.04	16.35	0.00	2.043	12.05	2.73	5.0	95.0	0.0	0.17	1.29	0.67	0.70	1.45	71598	9610	40	0	9	0	0	logfile
✔	7X3V	32994	2024-02-20	2022-03-01	3.09	3.36	—	3.1	0.011	0.77	0.0	0.05	25.59	0.01	2.135	9.67	0.00	6.2	93.8	0.0	-0.80	0.86	0.85	2.97	3.1	0.003	0.57	0.0	0.03	25.36	0.00	2.239	8.10	1.03	5.5	94.5	0.0	1.20	1.11	0.87	0.88	2.06	16799	1351	11	292	0	0	0	logfile
✔	7X3U	32993	2024-02-14	2022-03-01	3.3	3.43	3.37	3.3	0.003	0.58	0.0	0.04	12.38	0.00	1.650	1.66	0.03	3.3	96.6	0.0	-3.72	0.69	0.64	1.35	3.3	0.003	0.64	0.0	0.04	15.49	0.00	2.025	10.86	1.45	3.6	96.4	0.0	0.43	2.46	0.76	0.74	1.03	62495	8121	32	0	16	0	0	logfile
✔	7X3W	32995	2024-02-16	2022-03-01	3.1	3.38	—	3.2	0.009	0.77	0.0	0.05	25.40	0.00	1.833	10.29	0.00	5.5	94.5	0.0	0.00	0.88	0.87	3.18	3.2	0.004	0.58	0.0	0.04	25.39	0.00	2.014	8.31	0.74	3.7	96.3	0.0	0.98	1.13	0.89	0.89	2.60	16134	1265	12	292	3	0	0	logfile
✔	7Z30	14469	2024-02-24	2022-03-01	2.9	2.45	2.92	2.6	0.004	0.73	0.0	0.05	18.29	0.01	1.908	14.27	2.80	5.5	94.4	0.1	-1.03	0.57	0.76	2.48	2.5	0.005	0.77	2.0	0.04	18.52	0.01	1.928	14.57	4.02	6.0	93.9	0.1	-0.77	1.19	0.58	0.79	2.50	40685	5103	25	0	35	1	0	logfile
✔	7Z38	14473	2024-02-16	2022-03-01	3.16	3.33	3.14	3.3	0.005	0.60	0.0	0.04	18.68	0.00	2.085	10.69	0.19	5.9	94.1	0.1	-0.56	0.75	0.82	2.99	3.3	0.004	0.56	0.0	0.04	18.81	0.00	2.086	10.09	2.98	5.4	94.5	0.1	-0.56	0.30	0.74	0.83	2.79	14258	1740	6	0	4	0	0	logfile
✔	7X3X	32996	2024-02-15	2022-03-01	3.2	3.69	—	3.2	0.012	0.98	0.0	0.06	27.92	0.01	1.947	10.45	0.16	0.9	99.1	0.0	2.89	0.81	0.65	2.39	3.2	0.003	0.56	0.0	0.03	27.62	0.00	2.249	6.89	0.96	1.3	98.7	0.0	3.37	1.73	0.89	0.87	1.89	12036	769	11	292	0	0	0	logfile

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