Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X3W	32995	2024-02-16	2022-03-01	3.1	3.38	—	3.2	0.009	0.77	0.0	0.05	25.40	0.00	1.833	10.29	0.00	5.5	94.5	0.0	0.00	0.88	0.87	3.18	3.2	0.004	0.58	0.0	0.04	25.39	0.00	2.014	8.31	0.74	3.7	96.3	0.0	0.98	1.13	0.89	0.89	2.60	16134	1265	12	292	3	0	0	logfile
✔	7X3U	32993	2024-02-14	2022-03-01	3.3	3.43	3.37	3.3	0.003	0.58	0.0	0.04	12.38	0.00	1.650	1.66	0.03	3.3	96.6	0.0	-3.72	0.69	0.64	1.35	3.3	0.003	0.64	0.0	0.04	15.49	0.00	2.025	10.86	1.45	3.6	96.4	0.0	0.43	2.46	0.76	0.74	1.03	62495	8121	32	0	16	0	0	logfile
✔	7U46	26330	2024-02-19	2022-02-28	2.68	3.21	2.68	3.1	0.011	0.79	0.0	0.06	26.92	0.01	2.200	4.23	0.77	3.1	96.9	0.0	-0.24	0.60	0.79	4.78	3.1	0.004	0.63	0.0	0.04	27.32	0.00	2.024	3.90	1.15	2.3	97.7	0.0	1.94	0.45	0.62	0.81	3.53	24375	925	11	290	0	0	11015	logfile
✔	7Z2H	14466	2024-02-14	2022-02-27	3.58	2.76	3.60	3.6	0.008	0.80	2.0	0.05	17.90	0.02	2.263	9.08	0.72	4.3	95.5	0.1	-0.71	0.51	0.61	1.74	3.6	0.003	0.76	0.0	0.04	18.95	0.01	2.156	13.57	2.40	4.3	95.5	0.1	-0.63	0.42	0.52	0.63	1.71	8414	937	4	36	1	0	0	logfile
✔	7X34	32978	2024-02-13	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.1	0.005	0.79	0.0	0.04	25.46	0.00	2.101	32.71	1.30	2.0	98.0	0.0	-0.13	0.59	0.21	0.77	1.18	2762	100	2	94	0	0	0	logfile
✔	7Z2C	14461	2024-02-15	2022-02-26	4.1	4.33	—	4.0	0.012	1.59	2.0	0.09	14.71	0.01	1.174	9.07	0.48	3.0	96.8	0.2	-0.04	0.76	0.61	—	3.9	0.005	0.68	0.0	0.04	13.79	0.00	1.756	60.37	0.00	6.5	93.5	0.1	-0.54	2.89	0.86	0.78	—	12037	1201	5	0	4	0	2554	logfile
✔	7Z2D	14462	2024-02-14	2022-02-26	3.38	3.18	3.47	3.3	0.006	0.65	0.0	0.04	16.45	0.02	2.187	7.33	0.00	3.9	96.1	0.0	-0.02	0.60	0.69	2.73	3.3	0.003	0.68	0.0	0.04	18.12	0.01	2.229	9.69	1.28	4.5	95.5	0.0	-0.09	0.36	0.60	0.72	2.52	8591	959	4	36	1	0	0	logfile
✔	7Z2G	14465	2024-02-14	2022-02-26	3.65	3.52	3.63	3.6	0.007	0.73	1.0	0.05	17.09	0.02	2.324	8.07	0.24	3.9	96.1	0.0	-0.62	0.63	0.76	2.35	3.6	0.004	0.72	0.0	0.04	18.56	0.01	2.189	9.22	2.89	4.2	95.8	0.0	-0.70	0.39	0.63	0.76	2.25	8406	943	4	36	1	0	0	logfile
✔	7Z2E	14463	2024-02-14	2022-02-26	3.45	2.90	3.48	3.3	0.007	0.75	1.0	0.05	17.76	0.02	2.227	8.14	0.24	3.1	96.8	0.1	-0.47	0.54	0.68	2.51	3.3	0.006	0.82	0.0	0.05	19.00	0.01	2.044	12.81	2.36	5.1	94.7	0.1	-1.30	0.40	0.56	0.73	2.77	8479	945	4	36	1	0	0	logfile
✔	7Z29	14458	2024-02-14	2022-02-26	3.38	3.22	3.38	3.4	0.007	0.82	2.0	0.06	17.16	0.03	2.193	7.62	1.96	3.0	96.9	0.1	-0.47	0.61	0.71	1.90	3.4	0.004	0.72	0.0	0.04	18.18	0.01	2.161	9.03	2.69	3.1	96.7	0.1	-0.54	0.37	0.61	0.75	1.78	8307	935	4	36	1	0	0	logfile
✔	7Z2A	14459	2024-02-15	2022-02-26	4.3	4.49	—	4.3	0.012	1.59	2.0	0.09	14.75	0.01	0.925	8.38	0.48	2.8	97.0	0.2	0.00	0.80	0.62	—	4.2	0.003	0.58	0.0	0.04	14.31	0.00	1.816	56.02	0.00	4.4	95.6	0.1	0.33	1.81	0.90	0.80	—	12244	1201	5	0	4	0	2765	logfile
✔	7X2V	32972	2024-02-14	2022-02-26	3.09	2.34	—	2.1	0.007	0.93	0.0	0.05	11.89	0.01	2.115	6.17	0.10	5.5	94.5	0.0	-0.89	0.65	0.60	1.40	2.1	0.003	0.67	0.0	0.04	14.18	0.00	2.215	12.46	2.08	5.3	94.7	0.0	0.08	0.45	0.63	0.59	1.03	8755	1122	5	0	0	0	0	logfile
✔	7X2U	32971	2024-02-15	2022-02-26	3.2	2.92	—	3.1	0.010	0.92	0.0	0.05	16.54	0.00	2.138	11.43	0.94	3.6	96.4	0.0	-0.82	0.68	0.85	3.46	3.1	0.003	0.54	0.0	0.04	16.52	0.00	2.184	9.26	2.35	2.4	97.6	0.0	1.23	1.05	0.66	0.85	2.75	11861	1451	6	0	12	0	0	logfile
✔	7X28	32961	2024-02-23	2022-02-25	2.49	2.72	—	1.8	0.013	1.52	5.0	0.11	13.24	0.00	1.606	7.72	7.98	2.7	97.0	0.2	2.21	0.57	0.40	0.90	1.8	0.003	0.78	0.0	0.04	15.05	0.00	2.117	13.40	2.06	3.9	96.0	0.1	-0.10	1.76	0.82	0.79	1.94	31583	4119	7	0	0	0	0	logfile
✔	7Z24	14457	2024-02-14	2022-02-25	3.32	2.74	3.27	3.3	0.008	1.04	2.0	0.08	18.28	0.02	2.387	7.61	2.07	2.8	97.2	0.0	-0.18	0.57	0.71	2.96	3.3	0.004	0.73	0.0	0.04	19.37	0.01	2.095	7.68	3.28	2.3	97.7	0.0	-0.07	1.03	0.57	0.74	2.66	8303	929	4	36	1	0	0	logfile
✔	7X26	32959	2024-02-13	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	3.9	0.005	0.80	0.0	0.05	16.28	0.00	2.090	13.20	5.45	12.0	87.6	0.5	-2.36	1.67	0.71	0.77	2.02	4828	641	3	0	0	0	0	logfile
✔	7X2C	32964	2024-02-15	2022-02-25	3.2	3.88	—	3.8	0.006	0.71	0.0	0.05	13.49	0.00	2.102	9.59	0.48	2.0	98.0	0.0	0.97	0.58	0.72	1.80	3.8	0.003	0.57	0.0	0.04	15.43	0.00	2.115	10.68	2.30	2.2	97.8	0.0	0.94	0.37	0.58	0.72	1.09	7953	1031	6	0	3	0	0	logfile
✔	7X23	32956	2024-02-14	2022-02-25	3.2	2.34	3.00	3.0	0.004	0.59	0.0	0.04	13.25	0.00	2.232	9.24	0.00	2.9	97.1	0.0	1.28	0.53	0.64	1.83	3.0	0.003	0.54	0.0	0.04	15.31	0.00	2.106	9.54	1.56	2.9	97.1	0.0	0.91	1.00	0.56	0.75	1.80	9976	1262	5	0	5	7	0	logfile
✔	7Z1T	14452	2024-02-17	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.163	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.002	0.48	0.0	0.03	15.67	0.00	2.222	5.31	1.72	1.1	98.9	0.0	3.60	1.30	0.67	0.91	3.27	18492	2268	12	0	0	0	0	logfile
✔	7Z20	14454	2024-02-21	2022-02-25	2.29	2.70	—	2.5	0.009	0.78	2.0	0.06	24.28	0.01	2.134	6.28	2.34	4.9	95.0	0.2	-0.59	0.72	0.82	3.85	2.6	0.003	0.57	0.0	0.04	23.75	0.00	2.070	7.24	4.14	4.3	95.6	0.1	0.13	1.09	0.76	0.87	4.03	91024	3153	32	3096	0	0	0	logfile

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