Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WXW	32882	2024-02-13	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.0	0.003	0.59	0.0	0.04	15.70	0.00	2.181	5.61	2.49	3.5	96.5	0.0	0.15	1.17	0.78	0.78	2.65	8121	1032	5	0	0	0	0	logfile
✔	7WY0	32883	2024-02-14	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.67	0.0	0.04	15.23	0.00	2.116	12.31	2.80	5.3	94.7	0.0	0.05	0.46	0.75	0.75	2.77	8723	1112	5	0	0	0	0	logfile
✔	7TZ5	26202	2024-02-16	2022-02-15	3.41	3.66	—	3.6	0.009	1.18	9.0	0.07	13.20	0.00	2.067	15.18	0.30	10.6	89.0	0.4	-2.38	0.70	0.83	3.89	3.6	0.003	0.65	0.0	0.04	15.03	0.00	2.175	9.73	2.50	7.6	92.4	0.0	-1.27	0.71	0.67	0.82	3.65	16023	2142	9	0	0	0	0	logfile
✔	7WXU	32881	2024-02-13	2022-02-15	2.85	2.28	—	2.1	0.009	0.84	0.0	0.05	13.41	0.01	2.209	1.23	0.00	5.8	94.2	0.0	-1.00	0.78	0.78	3.95	2.1	0.003	0.60	0.0	0.04	15.63	0.00	2.113	4.00	2.59	3.8	96.2	0.0	0.64	0.36	0.80	0.81	2.61	8116	1034	5	0	0	0	0	logfile
✔	7YWY	14352	2024-02-15	2022-02-15	3.4	3.54	—	3.5	0.009	1.03	0.0	0.05	14.60	0.01	2.158	7.57	2.10	4.8	94.7	0.5	-0.06	0.58	0.77	1.22	3.5	0.004	0.76	1.0	0.04	16.79	0.00	1.503	7.41	3.08	2.7	96.9	0.4	1.55	0.60	0.63	0.75	1.39	63994	8568	28	0	0	0	0	logfile
✔	7TZ0	26201	2024-02-13	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.1	0.003	0.67	0.0	0.04	12.49	0.00	2.128	16.93	0.00	8.7	91.3	0.0	-1.81	1.40	0.44	0.63	—	2674	347	2	0	0	0	0	logfile
✔	7YX3	14353	2024-02-21	2022-02-15	4.0	3.15	3.42	3.3	0.004	0.66	0.0	0.05	15.41	0.00	1.650	14.33	0.61	4.8	95.2	0.0	-0.90	0.44	0.59	—	3.3	0.003	0.72	3.0	0.05	16.42	0.00	1.787	13.55	3.96	5.0	95.0	0.0	-0.85	1.42	0.48	0.68	—	91116	11682	36	0	18	0	0	logfile
✔	7TZ6	26203	2024-02-15	2022-02-15	2.88	3.27	—	3.2	0.005	0.77	0.0	0.04	12.16	0.01	2.038	1.51	0.26	2.6	97.3	0.0	0.43	0.65	0.83	3.78	3.2	0.003	0.57	0.0	0.04	15.40	0.00	1.881	4.06	1.59	3.0	97.0	0.0	1.64	0.68	0.67	0.86	3.19	64906	4126	28	0	10	0	32164	logfile
✔	7TYZ	26200	2024-02-21	2022-02-15	3.51	3.89	—	3.7	0.004	0.64	0.0	0.05	17.21	0.00	2.126	7.84	0.00	8.7	91.3	0.0	-1.41	0.74	0.79	1.64	3.7	0.014	0.79	0.0	0.05	15.40	0.01	2.091	10.91	1.75	10.6	89.3	0.1	-1.49	0.97	0.76	0.86	1.86	29736	3711	27	0	66	0	0	logfile
✔	7TYW	26196	2024-02-14	2022-02-14	3.0	2.92	2.97	3.1	0.004	0.68	1.0	0.04	13.38	0.00	2.199	5.38	1.41	1.9	98.1	0.0	-4.19	0.58	0.75	2.71	3.0	0.004	0.64	0.0	0.04	15.68	0.00	2.141	8.52	4.13	3.3	96.7	0.0	-0.40	0.53	0.60	0.80	3.11	9779	1256	10	0	7	1	0	logfile
✔	7TYS	26193	2024-02-18	2022-02-14	3.41	3.59	—	3.6	0.004	0.52	0.0	0.04	17.04	0.00	2.235	8.30	2.39	3.7	96.3	0.0	-0.22	0.58	0.81	2.74	3.6	0.003	0.58	0.0	0.04	17.31	0.00	2.160	10.20	5.44	3.4	96.6	0.0	0.24	1.09	0.57	0.80	2.11	21286	2788	11	0	27	0	0	logfile
✔	7WWV	32874	2024-02-18	2022-02-14	3.2	3.31	—	3.3	0.002	0.57	0.0	0.04	16.78	0.00	2.204	6.39	0.00	8.4	91.3	0.2	-0.65	0.74	0.80	2.46	3.3	0.003	0.59	0.0	0.04	18.38	0.00	2.043	7.69	2.56	9.6	90.2	0.2	-0.71	1.45	0.75	0.83	2.49	19622	2233	11	117	0	0	0	logfile
✔	7TYo	26190	2024-02-14	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.47	0.0	0.04	12.87	0.00	2.176	5.50	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.4	0.002	0.53	0.0	0.04	16.01	0.00	2.167	6.96	2.54	1.9	98.1	0.0	1.06	1.04	0.55	0.76	3.34	9052	1141	6	0	4	0	0	logfile
✔	7WXH	32879	2024-02-13	2022-02-14	4.3	4.50	3.92	4.3	0.006	0.86	0.0	0.04	14.12	0.00	2.067	26.18	1.74	11.4	88.3	0.2	-4.55	0.79	0.82	—	4.3	0.003	0.69	0.0	0.04	12.98	0.00	2.180	15.62	0.00	7.6	92.4	0.0	-1.43	1.32	0.78	0.80	—	6494	860	2	0	0	0	0	logfile
✔	7TYT	26194	2024-02-18	2022-02-14	3.6	3.74	—	3.7	0.004	0.55	0.0	0.04	17.00	0.00	2.202	8.38	1.67	3.6	96.4	0.0	0.83	0.58	0.78	1.34	3.7	0.005	0.64	0.0	0.05	17.41	0.00	2.077	10.89	4.95	5.8	94.2	0.0	0.45	0.30	0.58	0.79	1.26	20349	2759	11	0	22	0	0	logfile
✔	7WX3	32875	2024-02-14	2022-02-14	3.1	3.61	3.03	3.5	0.011	0.91	0.0	0.05	16.74	0.00	2.150	6.65	3.70	4.6	95.4	0.0	-3.51	0.57	0.78	1.78	3.5	0.004	0.63	0.0	0.04	16.67	0.00	2.073	6.29	2.18	2.3	97.7	0.0	-0.48	1.55	0.56	0.78	1.18	8472	1086	12	0	8	0	0	logfile
✔	7WXG	32878	2024-02-13	2022-02-14	4.2	4.21	3.56	4.2	0.012	1.07	0.0	0.05	15.42	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.003	0.71	0.0	0.04	13.84	0.00	2.246	10.45	0.00	6.5	93.5	0.0	-0.44	0.61	0.51	0.78	—	3295	430	1	0	1	0	0	logfile
✔	7TYX	26197	2024-02-14	2022-02-14	2.55	3.24	2.69	3.2	0.004	0.52	0.0	0.04	13.25	0.00	2.231	4.31	1.62	1.8	98.2	0.0	-3.16	0.59	0.75	3.60	3.2	0.003	0.58	0.0	0.04	15.27	0.00	2.106	6.93	3.14	1.8	98.2	0.0	0.93	0.62	0.46	0.67	3.39	10219	1269	8	0	14	0	0	logfile
✔	7TYV	26195	2024-02-17	2022-02-14	2.8	2.28	2.98	2.1	0.005	0.71	0.0	0.05	17.12	0.00	2.081	7.27	0.00	5.0	95.0	0.0	-0.19	0.75	0.72	2.31	2.0	0.004	0.65	0.0	0.05	16.14	0.00	2.107	7.15	2.72	5.3	94.7	0.0	-0.13	0.32	0.77	0.76	2.15	17306	2114	30	0	58	0	0	logfile
✔	7WXF	32877	2024-02-13	2022-02-14	3.6	3.96	3.68	4.0	0.007	0.79	0.0	0.05	15.05	0.00	2.123	13.40	0.29	12.6	87.1	0.2	-4.85	0.72	0.79	1.44	3.9	0.003	0.71	0.0	0.04	16.02	0.00	2.199	10.79	2.46	7.2	92.8	0.0	-1.37	1.20	0.71	0.77	1.52	6494	860	2	0	0	0	0	logfile

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