Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TYo	26190	2024-02-14	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.47	0.0	0.04	12.87	0.00	2.176	5.50	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.4	0.002	0.53	0.0	0.04	16.01	0.00	2.167	6.96	2.54	1.9	98.1	0.0	1.06	1.04	0.55	0.76	3.34	9052	1141	6	0	4	0	0	logfile
✔	7TYW	26196	2024-02-14	2022-02-14	3.0	2.92	2.97	3.1	0.004	0.68	1.0	0.04	13.38	0.00	2.199	5.38	1.41	1.9	98.1	0.0	-4.19	0.58	0.75	2.71	3.0	0.004	0.64	0.0	0.04	15.68	0.00	2.141	8.52	4.13	3.3	96.7	0.0	-0.40	0.53	0.60	0.80	3.11	9779	1256	10	0	7	1	0	logfile
✔	7TYS	26193	2024-02-18	2022-02-14	3.41	3.59	—	3.6	0.004	0.52	0.0	0.04	17.04	0.00	2.235	8.30	2.39	3.7	96.3	0.0	-0.22	0.58	0.81	2.74	3.6	0.003	0.58	0.0	0.04	17.31	0.00	2.160	10.20	5.44	3.4	96.6	0.0	0.24	1.09	0.57	0.80	2.11	21286	2788	11	0	27	0	0	logfile
✔	7WWM	32871	2024-02-21	2022-02-13	2.8	3.23	—	3.2	0.011	1.09	0.0	0.08	17.31	0.01	1.923	22.61	10.28	12.2	85.5	2.3	-4.23	0.67	0.71	2.23	3.2	0.005	0.84	2.0	0.05	16.10	0.00	1.967	7.90	3.11	6.6	93.1	0.3	-1.29	2.30	0.67	0.82	2.07	29536	3655	35	0	71	0	0	logfile
✔	7WWL	32869	2024-02-21	2022-02-13	3.0	3.13	—	3.1	0.010	1.02	0.0	0.07	17.17	0.01	1.911	20.05	9.75	9.5	88.2	2.3	-3.96	0.72	0.78	2.20	3.1	0.003	0.70	0.0	0.05	16.45	0.00	2.135	8.27	2.97	5.9	93.9	0.1	-0.84	2.78	0.74	0.85	2.35	29704	3673	35	0	71	0	0	logfile
✔	7TYL	26184	2024-02-14	2022-02-13	3.3	3.46	3.18	3.5	0.003	0.59	0.0	0.04	12.73	0.00	2.245	6.53	0.43	1.8	98.1	0.2	-2.52	0.61	0.67	2.72	3.5	0.002	0.56	0.0	0.04	15.02	0.00	2.211	8.34	2.02	2.9	97.1	0.0	0.02	0.41	0.64	0.79	2.33	8978	1156	6	0	1	0	0	logfile
✔	7TYM	26185	2024-02-15	2022-02-13	3.4	3.43	—	3.5	0.002	0.54	0.0	0.04	15.94	0.00	2.175	8.12	0.00	7.1	92.8	0.1	-1.35	0.73	0.81	2.62	3.5	0.002	0.54	0.0	0.04	16.43	0.00	2.169	7.28	2.67	7.4	92.6	0.0	-1.55	1.11	0.72	0.81	3.08	12112	1542	2	0	0	0	0	logfile
✔	7TYH	26179	2024-02-14	2022-02-13	3.3	3.26	3.31	3.4	0.003	0.61	0.0	0.04	12.28	0.01	2.274	4.73	1.05	1.9	98.1	0.0	-4.28	0.61	0.76	2.36	3.4	0.002	0.55	0.0	0.04	15.17	0.00	2.090	8.05	2.93	2.2	97.8	0.0	-0.65	0.49	0.59	0.78	2.50	9492	1246	7	0	1	0	0	logfile
✔	7TYF	26178	2024-02-14	2022-02-13	2.2	2.16	2.14	2.2	0.004	0.57	0.0	0.04	14.57	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.002	0.57	0.0	0.04	15.78	0.00	2.223	5.86	1.55	2.1	97.9	0.0	1.19	0.46	0.66	0.86	4.34	10331	1266	12	0	16	83	0	logfile
✔	7TYi	26180	2024-02-14	2022-02-13	3.3	3.44	3.19	3.5	0.004	0.57	0.0	0.04	12.81	0.00	2.217	6.55	1.50	1.6	98.4	0.0	-2.88	0.66	0.77	2.71	3.5	0.005	0.90	1.0	0.05	14.87	0.00	2.092	8.31	3.30	2.7	97.3	0.0	0.12	0.51	0.63	0.83	2.75	9413	1154	6	0	13	0	0	logfile
✔	7TYJ	26181	2024-02-13	2022-02-13	3.3	3.29	3.45	3.3	0.004	0.62	0.0	0.05	16.63	0.00	2.161	9.16	0.44	10.3	89.6	0.1	-1.90	0.67	0.83	3.05	3.3	0.002	0.59	0.0	0.04	16.94	0.00	2.233	8.76	2.91	9.5	90.3	0.1	-1.97	0.15	0.66	0.82	3.07	6338	808	2	0	0	0	0	logfile
✔	7TYK	26183	2024-02-15	2022-02-13	3.5	3.16	—	3.5	0.015	1.39	2.0	0.04	17.40	0.00	2.189	10.53	0.65	8.5	91.1	0.4	-1.65	0.67	0.78	2.60	3.5	0.006	0.90	2.0	0.05	17.72	0.01	2.218	9.54	4.72	11.6	88.2	0.3	-1.93	1.12	0.68	0.80	2.93	12698	1618	2	0	0	0	0	logfile
✔	7TYN	26188	2024-02-14	2022-02-13	2.6	2.72	2.56	2.8	0.004	0.62	1.0	0.05	13.82	0.00	2.216	5.53	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.003	0.58	0.0	0.04	16.05	0.00	2.187	6.66	3.27	2.2	97.8	0.0	0.99	0.46	0.67	0.84	3.21	9364	1154	7	0	18	0	0	logfile
✔	7WWi	32866	2024-02-21	2022-02-13	3.5	4.12	—	3.8	0.003	0.60	0.0	0.05	13.20	0.00	2.107	7.68	0.00	2.9	97.1	0.0	0.14	0.84	0.86	2.48	3.8	0.004	0.60	0.0	0.04	14.29	0.00	2.162	9.09	1.45	3.6	96.4	0.0	0.03	0.39	0.84	0.87	2.51	30237	3791	26	0	43	0	0	logfile
✔	7WWJ	32867	2024-02-20	2022-02-13	3.5	4.15	—	3.8	0.003	0.60	0.0	0.05	13.50	0.00	2.202	8.64	0.00	3.2	96.8	0.0	0.07	0.83	0.87	2.59	3.8	0.003	0.58	0.0	0.04	14.65	0.00	2.180	8.00	1.43	3.4	96.6	0.0	0.27	0.91	0.82	0.86	2.26	26915	3367	24	0	43	0	0	logfile
✔	7WWK	32868	2024-02-13	2022-02-13	3.4	3.74	—	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.206	7.38	0.00	4.1	95.7	0.2	-0.93	0.74	0.87	3.33	3.6	0.003	0.59	0.0	0.04	14.93	0.00	2.169	7.15	2.63	4.6	95.4	0.0	-0.78	0.37	0.75	0.90	2.86	6620	845	6	0	0	0	0	logfile
✔	7WWB	32865	2024-02-13	2022-02-12	3.86	4.08	—	4.1	0.008	0.97	0.0	0.07	9.32	0.01	2.511	0.45	0.00	2.5	97.5	0.0	0.18	0.48	0.76	2.65	4.1	0.003	0.69	0.0	0.04	15.55	0.01	2.257	11.01	4.36	4.4	95.5	0.2	-0.23	1.21	0.50	0.80	2.17	5428	666	4	0	4	0	0	logfile
✔	7WVZ	32863	2024-02-25	2022-02-12	3.38	3.15	3.39	3.4	0.012	1.77	5.0	0.09	12.99	0.02	2.526	0.04	1.38	4.3	95.5	0.1	-0.87	0.60	0.69	2.71	3.3	0.003	0.61	0.0	0.04	14.44	0.01	2.031	4.45	1.58	3.9	96.1	0.0	0.22	1.37	0.69	0.80	2.29	49889	3430	2	0	0	0	24824	logfile
✔	7TY4	26165	2024-02-14	2022-02-11	2.99	4.05	2.94	3.6	0.013	1.80	0.0	0.09	14.46	0.01	2.215	4.91	0.45	5.9	94.0	0.1	-2.69	0.69	0.86	4.04	3.6	0.004	0.77	0.0	0.04	14.68	0.00	2.200	8.29	1.34	2.6	97.4	0.0	1.70	0.60	0.68	0.86	2.31	8636	1030	8	0	14	72	0	logfile
✔	7TY7	26168	2024-02-14	2022-02-11	3.37	4.32	3.31	3.9	0.013	1.81	0.0	0.09	13.97	0.01	2.304	4.20	0.45	5.7	94.3	0.0	-3.03	0.66	0.83	2.76	3.9	0.004	0.68	0.0	0.04	14.14	0.00	2.247	8.17	2.34	2.6	97.4	0.0	2.08	1.62	0.65	0.84	2.16	8538	1032	8	0	15	20	0	logfile

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