Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TXD	26157	2024-02-18	2022-02-08	3.87	4.28	—	4.1	0.006	1.06	1.0	0.06	16.17	0.01	2.287	4.53	0.00	4.5	95.5	0.0	-2.19	0.81	0.77	1.64	4.1	0.003	0.68	0.0	0.04	14.43	0.00	2.157	11.64	3.17	4.4	95.6	0.0	-0.47	0.60	0.82	0.81	1.60	20555	2483	40	0	95	0	0	logfile
✔	7WUB	32827	2024-02-15	2022-02-08	3.0	3.30	—	3.3	0.012	0.95	6.0	0.05	15.24	0.01	1.859	45.64	1.96	5.4	94.2	0.4	1.00	0.70	0.81	1.61	3.3	0.003	0.68	0.0	0.04	15.88	0.00	2.035	10.00	2.30	5.8	94.0	0.1	0.38	0.56	0.69	0.85	1.93	63259	7985	24	0	24	0	0	logfile
✔	7WU9	32824	2024-02-14	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.59	0.0	0.04	15.36	0.00	2.208	7.68	2.44	2.4	97.6	0.0	1.17	0.78	0.69	0.84	2.26	7369	1030	5	0	0	0	0	logfile
✔	7WU7	32823	2024-02-16	2022-02-07	3.85	3.66	4.04	3.8	0.005	0.81	0.0	0.05	14.10	0.00	2.146	18.27	0.01	5.3	94.7	0.1	-1.14	0.70	0.65	0.47	3.8	0.003	0.79	0.0	0.04	16.60	0.00	2.070	20.17	3.30	5.9	94.1	0.0	-1.22	1.15	0.70	0.68	0.11	67031	8727	26	0	4	0	0	logfile
✔	7TX7	26156	2024-02-13	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	21.15	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.75	0.0	0.04	13.51	0.00	2.235	9.02	2.61	2.0	98.0	0.0	2.33	1.33	0.47	0.75	1.83	3203	397	1	0	4	0	0	logfile
✔	7TX6	26155	2024-02-13	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	17.01	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.5	0.003	0.74	0.0	0.05	14.86	0.01	2.349	6.37	1.88	3.0	97.0	0.0	1.74	1.60	0.54	0.78	2.34	3169	398	1	0	2	0	0	logfile
✔	7TVZ	26142	2024-02-17	2022-02-06	3.6	3.77	—	3.8	0.005	0.61	0.0	0.04	14.94	0.00	2.203	4.11	0.00	2.8	97.2	0.0	0.35	0.68	0.75	2.02	3.8	0.003	0.59	0.0	0.04	15.68	0.00	2.162	6.15	1.55	2.6	97.4	0.0	0.49	2.29	0.72	0.81	1.85	18659	2340	7	0	9	8	0	logfile
✔	7TW2	26148	2024-02-15	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.004	0.71	0.0	0.04	13.86	0.00	2.160	15.47	0.00	2.8	97.2	0.0	1.21	1.65	0.66	0.75	—	12838	1619	4	0	2	0	0	logfile
✔	7TW0	26146	2024-02-17	2022-02-06	4.6	3.70	—	3.6	0.003	0.73	0.0	0.04	13.83	0.01	2.169	5.66	0.05	2.1	97.9	0.0	0.34	0.69	0.78	—	3.5	0.003	0.63	0.0	0.04	14.21	0.00	2.179	10.82	0.05	3.1	96.9	0.0	0.64	1.19	0.69	0.79	—	18266	2309	5	0	2	0	0	logfile
✔	7TW1	26147	2024-02-19	2022-02-06	4.6	3.99	—	3.8	0.003	0.74	0.0	0.05	13.82	0.00	2.117	7.55	0.08	2.5	97.5	0.0	-0.20	0.75	0.78	—	3.7	0.005	0.71	0.0	0.04	14.02	0.00	2.104	15.31	0.00	5.1	94.9	0.0	-0.47	1.17	0.75	0.79	—	23625	2993	4	0	0	0	0	logfile
✔	7TW3	26149	2024-02-18	2022-02-06	4.4	4.83	—	4.4	0.004	0.75	0.0	0.04	13.70	0.01	2.104	9.87	0.08	3.0	97.0	0.0	-1.98	0.76	0.76	—	4.4	0.004	0.67	0.0	0.04	13.61	0.00	2.101	11.48	0.00	3.3	96.7	0.0	0.43	1.23	0.77	0.78	—	22641	2944	4	0	0	0	0	logfile
✔	7WTN	32792	2024-02-24	2022-02-05	3.4	3.34	—	3.3	0.005	0.83	0.0	0.04	22.05	0.01	2.114	5.74	0.09	8.3	91.7	0.1	-1.93	0.83	0.84	2.55	3.3	0.004	0.63	0.0	0.04	21.92	0.01	2.047	10.13	2.50	8.9	91.0	0.2	-0.73	1.10	0.85	0.86	2.28	46427	2635	19	1200	1	0	0	logfile
✔	7WTo	32793	2024-02-24	2022-02-05	3.5	3.41	—	3.3	0.005	0.84	0.0	0.04	22.20	0.01	2.105	6.35	0.05	7.9	92.0	0.1	-2.03	0.85	0.84	2.16	3.3	0.006	0.74	0.0	0.04	22.19	0.01	2.066	11.99	2.71	10.1	89.7	0.2	-1.16	0.32	0.85	0.84	2.03	44490	2383	17	1200	1	0	0	logfile
✔	7WTR	32796	2024-02-13	2022-02-05	3.5	3.44	—	3.3	0.006	0.88	0.0	0.05	22.22	0.01	2.080	6.30	0.00	7.2	92.7	0.1	-3.07	0.84	0.83	2.34	3.3	0.007	0.75	0.0	0.04	22.30	0.01	2.054	12.74	2.70	9.0	90.9	0.1	-1.26	1.13	0.84	0.83	1.97	53512	3259	20	1298	1	0	0	logfile
✔	7WTW	32803	2024-02-20	2022-02-05	3.2	3.12	—	3.0	0.004	0.80	0.0	0.04	21.28	0.01	1.921	6.44	0.02	4.1	95.8	0.0	-1.12	0.73	0.67	2.19	3.0	0.005	0.67	0.0	0.04	21.51	0.00	1.936	11.95	1.74	4.0	95.9	0.1	0.15	1.13	0.76	0.72	1.99	87147	6694	39	1586	2	0	0	logfile
✔	7WTL	32790	2024-02-25	2022-02-05	3.3	3.22	—	3.1	0.003	0.80	0.0	0.04	21.47	0.01	2.096	6.20	0.04	6.2	93.7	0.1	-1.81	0.79	0.76	2.24	3.1	0.005	0.68	0.0	0.04	21.62	0.01	2.013	10.30	3.27	7.1	92.8	0.1	-0.95	0.36	0.82	0.81	1.79	49811	3298	21	1102	3	0	0	logfile
✔	7WU2	32817	2024-02-13	2022-02-05	2.8	2.56	—	2.8	0.002	0.51	0.0	0.04	12.86	0.00	2.200	6.51	0.00	2.1	97.9	0.0	0.79	0.64	0.77	2.92	2.8	0.003	0.55	0.0	0.04	16.00	0.00	2.186	7.02	2.74	3.4	96.6	0.0	0.89	1.20	0.65	0.81	3.27	7829	1010	5	0	0	0	0	logfile
✔	7WTT	32800	2024-02-20	2022-02-05	3.1	2.98	—	2.9	0.006	0.92	0.0	0.05	21.57	0.01	2.066	5.99	0.46	4.0	96.0	0.0	-1.30	0.70	0.65	2.39	2.9	0.004	0.66	0.0	0.04	21.77	0.00	2.041	11.76	1.71	3.9	96.1	0.0	-0.10	2.39	0.74	0.69	2.16	83677	6254	36	1575	1	0	0	logfile
✔	7WTX	32804	2024-02-20	2022-02-05	3.1	2.92	—	2.9	0.008	1.03	0.0	0.05	21.93	0.01	2.150	6.11	0.04	4.1	95.8	0.1	-1.33	0.75	0.72	2.55	2.9	0.008	0.82	0.0	0.05	22.13	0.01	1.992	11.12	2.42	4.6	95.3	0.0	0.03	1.14	0.78	0.77	2.25	85074	6371	36	1605	2	0	0	logfile
✔	7WTV	32802	2024-02-20	2022-02-05	3.5	3.24	—	3.1	0.005	0.84	0.0	0.05	21.33	0.01	2.111	5.70	0.02	4.1	95.9	0.0	-2.58	0.74	0.67	2.10	3.1	0.008	0.81	0.0	0.05	21.60	0.01	2.025	13.38	1.76	4.9	95.1	0.0	-0.48	1.17	0.75	0.70	1.90	84177	6353	37	1574	1	0	0	logfile

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