Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TUi	26132	2024-02-20	2022-02-02	2.66	2.87	—	2.9	0.005	0.87	0.0	0.05	12.34	0.01	2.034	16.42	0.00	6.8	92.8	0.4	-2.00	0.35	0.69	2.57	2.9	0.003	0.68	0.0	0.04	15.78	0.00	2.089	13.80	1.50	6.3	93.4	0.3	-1.09	1.17	0.34	0.73	2.45	27380	3466	2	0	1	0	0	logfile
✔	7R1B	14237	2024-02-19	2022-02-02	2.8	3.00	2.92	2.9	0.005	0.68	0.0	0.05	12.03	0.00	2.220	3.33	0.54	3.4	96.6	0.0	-0.28	0.73	0.82	3.60	2.9	0.004	0.63	0.0	0.05	13.71	0.00	2.168	4.98	1.72	4.1	95.9	0.0	-0.40	1.13	0.77	0.85	3.48	25554	3193	14	0	42	0	0	logfile
✔	7R11	14227	2024-02-13	2022-02-02	3.5	3.66	3.48	3.7	0.004	0.56	0.0	0.05	11.82	0.00	2.261	4.32	0.54	3.4	96.6	0.0	0.15	0.69	0.75	2.31	3.7	0.004	0.63	0.0	0.04	14.18	0.00	2.227	6.10	0.95	4.6	95.4	0.0	0.10	2.46	0.71	0.75	1.86	6870	837	4	0	8	0	0	logfile
✔	7R1A	14236	2024-02-23	2022-02-02	3.9	4.30	4.07	4.0	0.004	0.54	0.0	0.04	14.14	0.00	2.134	8.41	0.00	4.5	95.5	0.0	-0.07	0.86	0.83	1.19	4.0	0.003	0.61	0.0	0.04	15.00	0.00	2.087	10.24	1.41	4.1	95.9	0.0	0.12	0.50	0.86	0.82	1.03	38616	4758	15	0	57	0	0	logfile
✔	7TU7	26128	2024-02-23	2022-02-02	2.5	2.05	2.51	1.9	0.010	0.78	0.0	0.04	17.47	0.00	1.947	2.34	0.92	2.5	97.5	0.0	0.68	0.81	0.81	3.84	1.9	0.003	0.48	0.0	0.04	17.19	0.00	1.977	3.11	1.73	2.2	97.8	0.0	1.29	0.33	0.84	0.85	3.89	19932	2586	12	0	24	0	0	logfile
✔	7R18	14234	2024-02-19	2022-02-02	3.0	3.30	3.33	3.2	0.006	0.71	0.0	0.06	10.84	0.01	2.212	2.74	0.32	3.9	96.1	0.0	0.28	0.78	0.79	3.10	3.2	0.003	0.59	0.0	0.04	12.75	0.00	2.153	4.25	1.72	3.7	96.3	0.0	0.24	1.17	0.81	0.83	2.63	25773	3189	15	0	60	0	0	logfile
✔	7TTW	26125	2024-02-19	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	22.87	0.00	2.065	3.74	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.004	0.72	0.0	0.04	23.05	0.01	2.013	4.23	3.82	5.5	94.5	0.0	-1.98	0.25	0.73	0.86	2.97	80853	2661	27	2801	0	0	0	logfile
✔	7TU5	26126	2024-02-23	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.005	0.54	0.0	0.04	16.45	0.00	1.934	5.52	2.52	1.3	98.6	0.1	1.75	0.78	0.87	0.87	5.13	19656	2574	18	0	6	6	0	logfile
✔	7WSR	32765	2024-02-14	2022-02-01	2.9	3.08	2.90	3.1	0.004	0.65	0.0	0.04	10.32	0.00	2.244	4.74	0.83	1.8	98.2	0.0	1.52	0.62	0.82	2.75	3.1	0.004	0.65	0.0	0.04	14.61	0.00	2.160	9.63	1.98	2.9	97.1	0.0	1.97	0.96	0.62	0.85	2.61	9366	1200	4	0	4	0	0	logfile
✔	7R06	14220	2024-02-14	2022-02-01	2.27	2.36	2.34	2.3	0.007	0.85	6.0	0.06	20.28	0.01	2.153	12.58	5.53	1.2	98.6	0.2	0.06	0.74	0.80	4.13	2.3	0.004	0.55	0.0	0.04	19.52	0.00	2.219	6.35	2.47	1.2	98.6	0.2	0.98	0.50	0.77	0.85	4.60	31320	3588	12	66	0	0	0	logfile
✔	7WSV	32768	2024-02-16	2022-02-01	4.5	4.52	4.26	4.5	0.003	0.74	0.0	0.04	13.53	0.00	2.263	10.81	0.00	4.5	95.5	0.0	0.72	0.52	0.75	—	4.5	0.003	0.72	0.0	0.04	13.02	0.00	2.178	11.14	0.38	4.2	95.8	0.0	1.30	1.37	0.53	0.75	—	16443	2051	7	0	0	0	0	logfile
✔	7WSQ	32764	2024-02-16	2022-02-01	3.8	3.52	—	3.9	0.038	1.52	0.0	0.45	14.72	0.01	1.827	11.77	0.00	4.9	95.1	0.0	-0.66	0.68	0.75	1.94	3.9	0.003	1.08	0.0	0.06	16.44	0.00	1.792	13.50	2.23	4.9	95.1	0.0	-0.42	1.29	0.69	0.76	1.70	16522	2104	10	0	10	0	0	logfile
✔	7TTU	26124	2024-02-19	2022-02-01	3.0	2.90	—	3.1	0.002	0.46	0.0	0.03	22.58	0.00	2.175	4.25	0.00	3.6	96.4	0.0	-1.25	0.62	0.66	1.12	3.0	0.005	0.70	0.0	0.04	23.01	0.01	2.033	4.85	5.13	5.7	94.3	0.0	-1.89	0.85	0.76	0.87	2.74	80724	2661	27	2795	0	0	0	logfile
✔	7TTN	26120	2024-02-22	2022-02-01	3.3	3.63	—	3.5	0.005	0.68	1.0	0.04	16.38	0.00	1.873	4.98	0.48	3.1	96.7	0.1	-3.04	0.64	0.86	2.32	3.5	0.003	0.69	1.0	0.04	16.64	0.00	1.906	5.11	1.79	3.6	96.3	0.1	-0.20	0.33	0.65	0.87	1.97	34563	4481	25	0	24	8	0	logfile
✔	7TTS	26122	2024-02-17	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.75	0.00	1.912	17.34	0.43	3.4	96.5	0.1	2.16	0.99	0.71	0.43	-0.20	18793	2686	12	0	23	0	0	logfile
✔	7TTR	26121	2024-02-16	2022-02-01	2.96	3.21	—	3.2	0.009	1.08	1.0	0.08	13.73	0.01	1.788	6.35	0.30	4.4	95.4	0.2	1.27	0.60	0.69	3.46	3.2	0.004	0.64	0.0	0.04	16.50	0.00	1.925	9.86	2.07	3.9	96.0	0.1	0.74	0.75	0.75	0.87	3.59	15697	1912	12	0	23	0	0	logfile
✔	7TTT	26123	2024-02-22	2022-02-01	2.9	3.39	—	3.3	0.006	0.71	3.0	0.05	16.27	0.00	1.898	4.26	1.10	3.9	95.9	0.1	0.31	0.62	0.85	2.75	3.3	0.002	0.54	0.0	0.04	16.49	0.00	1.741	4.22	1.55	3.3	96.7	0.0	1.20	0.27	0.61	0.85	2.29	35180	4561	25	0	24	8	0	logfile
✔	7R04	14219	2024-02-23	2022-02-01	3.7	4.45	—	3.7	0.006	1.02	2.0	0.05	13.99	0.01	2.201	7.86	0.27	3.4	96.5	0.0	-0.62	0.84	0.75	0.59	3.7	0.002	0.65	0.0	0.04	15.21	0.00	2.074	11.67	0.89	3.1	96.8	0.0	1.52	1.13	0.84	0.75	0.58	36250	4555	3	0	1	0	0	logfile
✔	7R03	14218	2024-02-22	2022-02-01	3.6	4.69	—	3.8	0.006	1.15	1.0	0.06	13.88	0.01	2.224	5.84	0.00	4.2	95.8	0.0	-2.18	0.86	0.76	0.62	3.8	0.003	0.69	0.0	0.04	15.13	0.00	2.075	12.98	0.98	4.3	95.7	0.0	1.26	1.15	0.86	0.76	0.54	35621	4487	2	0	0	0	0	logfile
✔	7TTH	26115	2024-02-15	2022-02-01	3.25	3.81	—	3.7	0.004	0.70	0.0	0.05	13.05	0.00	2.232	7.80	0.00	4.5	95.5	0.0	-0.01	0.55	0.71	1.99	3.7	0.003	0.86	1.0	0.05	14.23	0.00	2.097	6.20	1.75	4.7	95.3	0.0	0.59	0.51	0.65	0.79	1.71	12698	1750	8	0	10	0	0	logfile

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