Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TVE	26140	2024-02-16	2022-02-04	3.8	4.04	—	4.0	0.005	0.86	0.0	0.05	19.05	0.00	2.213	17.42	3.26	13.4	86.3	0.3	-4.24	0.73	0.69	1.65	4.0	0.003	0.68	0.0	0.04	19.82	0.00	2.163	13.33	3.57	8.4	91.5	0.1	-1.64	0.74	0.75	0.72	0.95	15456	1793	8	54	1	0	0	logfile
✔	7R1Y	14243	2024-02-13	2022-02-03	3.0	3.01	2.95	3.0	0.002	0.52	0.0	0.04	13.13	0.00	2.252	6.47	3.44	2.9	97.1	0.0	0.36	0.72	0.71	2.29	3.0	0.003	0.59	0.0	0.04	16.24	0.00	2.118	13.02	3.29	3.7	96.3	0.0	1.14	1.12	0.73	0.73	2.12	5704	723	1	0	0	0	0	logfile
✔	7R1W	14242	2024-02-18	2022-02-03	3.6	4.16	3.69	4.0	0.006	0.69	0.0	0.05	13.74	0.00	1.387	8.79	0.16	4.7	95.0	0.3	-2.64	0.74	0.81	3.05	4.0	0.004	0.55	0.0	0.04	14.56	0.00	2.053	5.86	0.71	4.1	95.9	0.0	-0.08	0.99	0.75	0.83	2.74	23186	1509	6	0	0	0	11363	logfile
✔	7TUZ	26136	2024-02-14	2022-02-03	3.12	3.73	—	3.6	0.011	0.73	0.0	0.07	12.68	0.01	2.161	6.74	0.10	3.5	96.5	0.0	-2.23	0.73	0.86	3.03	3.5	0.004	0.90	0.0	0.04	14.91	0.00	1.732	10.14	2.18	2.8	97.2	0.0	0.10	0.57	0.72	0.86	2.63	8910	1141	6	0	1	0	0	logfile
✔	7TUY	26135	2024-02-13	2022-02-03	2.98	3.60	—	3.4	0.005	0.87	0.0	0.05	12.82	0.01	2.202	7.13	0.26	5.6	94.4	0.0	-3.71	0.68	0.81	3.08	3.4	0.019	0.74	0.0	0.04	15.28	0.01	2.156	10.38	2.98	5.1	94.9	0.0	-1.31	1.03	0.69	0.83	2.08	7157	928	4	0	1	0	0	logfile
✔	7TU6	26127	2024-02-23	2022-02-02	2.7	2.11	2.73	2.0	0.007	0.79	6.0	0.06	15.19	0.01	1.892	3.29	0.62	3.0	97.0	0.0	0.38	0.77	0.76	2.74	1.9	0.003	0.50	0.0	0.04	17.35	0.00	1.988	4.72	2.53	3.3	96.7	0.0	1.06	0.48	0.81	0.82	3.07	20028	2580	12	0	18	0	0	logfile
✔	7TTW	26125	2024-02-19	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	22.87	0.00	2.065	3.74	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.004	0.72	0.0	0.04	23.05	0.01	2.013	4.23	3.82	5.5	94.5	0.0	-1.98	0.25	0.73	0.86	2.97	80853	2661	27	2801	0	0	0	logfile
✔	7TU5	26126	2024-02-23	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.005	0.54	0.0	0.04	16.45	0.00	1.934	5.52	2.52	1.3	98.6	0.1	1.75	0.78	0.87	0.87	5.13	19656	2574	18	0	6	6	0	logfile
✔	7TU8	26129	2024-02-23	2022-02-02	2.6	2.05	2.59	2.0	0.011	0.81	0.0	0.05	14.51	0.00	1.874	2.75	0.00	2.8	97.0	0.2	0.45	0.81	0.80	4.16	1.9	0.006	0.61	0.0	0.04	16.83	0.00	1.927	4.26	1.83	2.3	97.7	0.0	0.86	0.42	0.84	0.84	3.77	20232	2604	12	0	24	0	0	logfile
✔	7R0W	14224	2024-02-16	2022-02-02	2.8	3.25	2.77	2.9	0.005	0.96	0.0	0.12	20.39	0.01	2.048	11.73	0.84	3.2	96.8	0.0	-2.64	0.89	0.89	3.27	2.9	0.005	0.84	0.0	0.05	18.42	0.00	2.086	14.48	2.47	2.5	97.5	0.0	0.35	0.49	0.90	0.90	3.87	16830	2040	32	0	27	2	0	logfile
✔	7R1A	14236	2024-02-23	2022-02-02	3.9	4.30	4.07	4.0	0.004	0.54	0.0	0.04	14.14	0.00	2.134	8.41	0.00	4.5	95.5	0.0	-0.07	0.86	0.83	1.19	4.0	0.003	0.61	0.0	0.04	15.00	0.00	2.087	10.24	1.41	4.1	95.9	0.0	0.12	0.50	0.86	0.82	1.03	38616	4758	15	0	57	0	0	logfile
✔	7R11	14227	2024-02-13	2022-02-02	3.5	3.66	3.48	3.7	0.004	0.56	0.0	0.05	11.82	0.00	2.261	4.32	0.54	3.4	96.6	0.0	0.15	0.69	0.75	2.31	3.7	0.004	0.63	0.0	0.04	14.18	0.00	2.227	6.10	0.95	4.6	95.4	0.0	0.10	2.46	0.71	0.75	1.86	6870	837	4	0	8	0	0	logfile
✔	7R0Z	14225	2024-02-13	2022-02-02	3.5	3.71	3.51	3.7	0.005	0.64	0.0	0.05	13.56	0.01	2.203	3.78	0.00	2.5	97.5	0.0	0.47	0.74	0.82	2.38	3.7	0.003	0.56	0.0	0.04	15.23	0.00	2.285	4.38	1.49	2.3	97.7	0.0	1.10	0.32	0.74	0.82	2.10	6891	839	4	0	9	0	0	logfile
✔	7R1B	14237	2024-02-19	2022-02-02	2.8	3.00	2.92	2.9	0.005	0.68	0.0	0.05	12.03	0.00	2.220	3.33	0.54	3.4	96.6	0.0	-0.28	0.73	0.82	3.60	2.9	0.004	0.63	0.0	0.05	13.71	0.00	2.168	4.98	1.72	4.1	95.9	0.0	-0.40	1.13	0.77	0.85	3.48	25554	3193	14	0	42	0	0	logfile
✔	7R0J	14223	2024-02-13	2022-02-02	4.23	4.64	4.43	4.4	0.008	1.03	0.0	0.05	13.44	0.01	2.029	37.19	0.20	8.8	91.2	0.0	-0.99	0.76	0.79	—	4.4	0.006	0.82	0.0	0.05	13.54	0.00	2.057	35.58	0.00	9.0	91.0	0.0	-1.45	0.59	0.76	0.80	—	4669	596	3	0	0	0	0	logfile
✔	7R10	14226	2024-02-14	2022-02-02	4.0	4.22	3.99	3.9	0.003	0.52	0.0	0.04	13.31	0.00	2.131	6.97	0.47	3.6	96.4	0.0	0.67	0.90	0.83	—	3.9	0.003	0.51	0.0	0.04	14.33	0.00	2.148	8.32	0.94	3.6	96.4	0.0	0.63	0.52	0.90	0.84	—	9823	1210	4	0	8	0	0	logfile
✔	7R15	14231	2024-02-19	2022-02-02	4.1	4.52	4.27	4.3	0.004	0.57	0.0	0.05	14.18	0.00	2.099	11.10	0.00	6.2	93.8	0.0	-0.90	0.86	0.84	—	4.3	0.005	0.63	0.0	0.05	13.74	0.00	2.125	12.66	0.08	6.5	93.5	0.0	-0.94	0.35	0.85	0.84	—	24100	3000	9	0	43	0	0	logfile
✔	7R13	14229	2024-02-19	2022-02-02	3.6	3.78	3.64	3.7	0.004	0.60	0.0	0.04	12.84	0.00	2.232	6.28	0.00	4.7	95.3	0.0	-0.51	0.81	0.83	2.58	3.7	0.004	0.57	0.0	0.04	13.97	0.00	2.201	6.57	1.75	4.1	95.9	0.0	-0.28	1.15	0.80	0.84	2.48	24303	3003	15	0	57	0	0	logfile
✔	7TUB	26131	2024-02-23	2022-02-02	3.6	3.87	—	3.7	0.005	0.70	2.0	0.04	16.00	0.00	1.797	5.45	0.49	4.0	95.9	0.1	-0.97	0.66	0.86	2.16	3.7	0.003	0.60	0.0	0.04	16.47	0.00	1.650	6.14	2.14	3.9	96.1	0.0	0.59	0.33	0.65	0.85	1.52	35877	4650	25	0	24	8	0	logfile
✔	7TUi	26132	2024-02-20	2022-02-02	2.66	2.87	—	2.9	0.005	0.87	0.0	0.05	12.34	0.01	2.034	16.42	0.00	6.8	92.8	0.4	-2.00	0.35	0.69	2.57	2.9	0.003	0.68	0.0	0.04	15.78	0.00	2.089	13.80	1.50	6.3	93.4	0.3	-1.09	1.17	0.34	0.73	2.45	27380	3466	2	0	1	0	0	logfile

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