Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WSE	32755	2024-02-15	2022-01-29	2.93	3.45	—	3.4	0.002	0.44	0.0	0.04	10.17	0.00	2.193	4.86	1.01	1.8	98.2	0.0	-0.67	0.69	0.79	3.50	3.4	0.004	0.65	0.0	0.04	15.22	0.00	2.013	8.20	2.74	2.8	97.2	0.0	0.57	2.06	0.64	0.82	2.47	6431	791	3	0	1	0	0	logfile
✔	7WSH	32758	2024-02-15	2022-01-29	2.89	3.01	—	3.0	0.003	0.45	0.0	0.04	10.06	0.00	2.140	5.01	0.72	1.9	98.1	0.0	-0.03	0.69	0.82	4.30	3.0	0.002	0.53	0.0	0.04	15.32	0.00	2.134	8.98	2.15	2.3	97.7	0.0	1.12	0.84	0.72	0.85	3.63	6457	793	4	0	2	0	0	logfile
✔	7WSG	32757	2024-02-15	2022-01-29	3.03	3.29	—	3.2	0.003	0.52	0.0	0.04	12.82	0.00	2.058	10.65	4.60	2.7	97.3	0.0	-1.05	0.70	0.70	2.71	3.2	0.003	0.62	0.0	0.04	15.45	0.00	2.132	13.45	3.02	3.7	96.3	0.0	-0.50	0.92	0.71	0.74	2.05	6413	787	3	0	1	0	0	logfile
✔	7TRJ	26098	2024-02-19	2022-01-29	2.8	3.41	—	3.3	0.003	0.84	0.0	0.05	16.16	0.00	2.080	9.67	6.92	3.6	96.3	0.1	-1.80	0.78	0.82	2.52	3.3	0.004	0.63	0.0	0.04	16.41	0.00	2.120	7.08	3.24	4.0	96.0	0.0	1.06	0.67	0.79	0.85	3.02	25190	3234	10	0	0	0	0	logfile
✔	7TRK	26099	2024-02-14	2022-01-29	2.8	3.39	2.76	3.2	0.006	0.89	0.0	0.06	11.33	0.01	2.253	2.57	0.11	1.6	98.4	0.0	-1.00	0.73	0.86	4.24	3.1	0.004	0.59	0.0	0.04	14.37	0.00	2.094	8.12	1.62	2.1	97.9	0.0	0.85	0.49	0.74	0.89	3.76	8659	1126	6	0	1	0	0	logfile
✔	7TRG	26089	2024-02-22	2022-01-28	3.0	3.44	—	3.3	0.005	0.68	1.0	0.04	15.52	0.00	1.932	4.57	0.19	3.8	96.2	0.0	1.26	0.64	0.86	2.32	3.3	0.003	0.59	0.0	0.04	16.25	0.00	1.071	4.44	1.12	3.7	96.3	0.0	1.14	1.13	0.63	0.86	1.96	33714	4377	25	0	24	8	0	logfile
✔	7WSA	32752	2024-02-13	2022-01-28	3.0	3.42	—	3.4	0.004	0.78	0.0	0.05	13.94	0.01	2.185	11.53	0.00	2.9	97.1	0.0	-1.59	0.76	0.71	2.04	3.3	0.004	0.81	0.0	0.05	15.64	0.00	2.189	13.55	1.99	3.9	96.1	0.0	0.30	0.73	0.78	0.77	1.78	6567	796	4	0	7	0	0	logfile
✔	7WS0	32739	2024-02-21	2022-01-28	3.2	3.66	—	3.5	0.004	0.62	0.0	0.05	13.18	0.00	2.225	5.96	0.00	3.1	96.9	0.0	-0.91	0.80	0.80	2.70	3.5	0.004	0.62	0.0	0.05	14.24	0.00	2.112	7.37	1.85	4.1	95.9	0.0	-0.38	0.55	0.79	0.85	2.55	30440	3817	30	0	66	0	0	logfile
✔	7WRZ	32738	2024-02-13	2022-01-28	3.26	3.44	—	3.4	0.004	0.62	0.0	0.04	13.60	0.01	2.201	6.90	0.00	5.9	94.1	0.0	-1.03	0.65	0.85	3.98	3.4	0.004	0.59	0.0	0.04	15.59	0.00	2.249	7.21	3.45	5.7	94.1	0.2	-0.99	1.14	0.62	0.86	3.40	3270	414	4	0	2	0	0	logfile
✔	7TRC	26085	2024-02-16	2022-01-28	3.3	3.10	—	3.3	0.003	0.64	0.0	0.04	17.83	0.00	2.121	8.21	0.21	4.2	95.8	0.0	-1.82	0.66	0.74	2.50	3.3	0.003	0.62	0.0	0.04	19.12	0.00	2.127	9.36	3.04	4.9	95.1	0.0	-1.12	0.47	0.68	0.77	1.76	14747	1599	10	92	0	0	0	logfile
✔	7WS4	32743	2024-02-20	2022-01-28	3.7	4.11	—	3.9	0.004	0.62	0.0	0.05	13.51	0.00	2.110	9.30	0.00	3.5	96.5	0.0	0.09	0.83	0.85	2.54	3.9	0.006	0.67	0.0	0.05	14.60	0.00	2.084	10.71	1.14	4.3	95.7	0.0	-0.10	0.34	0.84	0.87	2.44	26566	3327	22	0	38	0	0	logfile
✔	7WS5	32744	2024-02-21	2022-01-28	3.7	4.15	—	3.9	0.003	0.61	0.0	0.05	13.30	0.00	2.168	9.14	0.09	2.5	97.5	0.1	-0.07	0.83	0.84	1.95	3.8	0.003	0.59	0.0	0.04	14.54	0.00	2.153	10.73	1.54	3.8	96.2	0.0	-0.03	1.27	0.84	0.86	1.99	30228	3800	26	0	38	0	0	logfile
✔	7WS2	32741	2024-02-13	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.004	0.70	0.0	0.05	15.39	0.00	2.118	10.43	4.95	6.6	93.4	0.0	-1.77	0.46	0.70	0.82	3.49	3343	431	3	0	0	0	0	logfile
✔	7WSC	32753	2024-02-13	2022-01-28	3.78	4.01	—	4.0	0.013	1.67	5.0	0.10	15.34	0.01	1.600	41.09	4.99	14.7	81.6	3.6	-4.09	0.65	0.78	2.33	4.0	0.005	0.85	0.0	0.05	16.53	0.01	2.143	21.38	6.65	12.8	86.7	0.5	-2.74	1.23	0.64	0.78	1.89	3369	422	4	0	2	0	0	logfile
✔	7WS3	32742	2024-02-21	2022-01-28	3.6	4.00	—	3.8	0.004	0.65	0.0	0.05	13.16	0.00	2.202	7.83	0.03	3.2	96.8	0.0	-0.92	0.80	0.76	2.72	3.8	0.003	0.63	0.0	0.04	14.56	0.00	2.078	8.40	1.98	3.8	96.2	0.0	-0.48	1.30	0.83	0.84	2.32	30215	3811	27	0	54	0	0	logfile
✔	7WS7	32749	2024-02-13	2022-01-28	3.4	3.83	—	3.7	0.005	0.71	0.0	0.05	14.98	0.00	1.820	9.34	0.00	5.1	94.9	0.0	-1.78	0.71	0.84	3.63	3.7	0.003	0.65	0.0	0.04	15.70	0.00	2.120	9.54	2.66	4.2	95.8	0.0	-1.21	0.95	0.70	0.87	3.25	5209	671	6	0	2	0	0	logfile
✔	7TR8	26082	2024-02-22	2022-01-28	3.6	4.39	—	4.1	0.002	0.54	0.0	0.04	14.97	0.00	2.037	11.91	0.03	7.5	92.2	0.4	-1.00	0.75	0.46	-0.02	4.1	0.003	0.82	0.0	0.05	17.20	0.00	2.087	20.94	2.24	8.3	91.4	0.3	-1.71	2.18	0.83	0.70	0.07	33581	4192	18	45	2	0	0	logfile
✔	7TR9	26083	2024-02-22	2022-01-28	3.9	4.30	—	4.1	0.003	0.68	2.0	0.05	13.73	0.00	1.387	16.20	0.17	8.7	90.9	0.4	-2.44	0.80	0.72	0.00	4.0	0.006	0.88	0.0	0.05	16.61	0.01	1.053	35.76	3.00	11.3	88.3	0.4	-2.45	2.98	0.83	0.80	0.79	34208	4192	20	75	2	0	0	logfile
✔	7TRA	26084	2024-02-22	2022-01-28	3.3	3.94	—	3.8	0.003	0.60	0.0	0.04	15.66	0.00	2.017	16.19	0.00	7.6	92.1	0.3	-1.17	0.80	0.73	0.77	3.7	0.003	0.70	0.0	0.04	17.45	0.00	2.023	21.44	2.19	7.9	91.9	0.2	-1.24	1.34	0.82	0.80	1.12	34872	4174	20	113	2	0	0	logfile
✔	7WS6	32748	2024-02-13	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.80	0.0	0.05	16.55	0.00	2.259	15.30	3.62	5.8	94.2	0.0	-1.47	0.66	0.67	0.74	2.24	3531	451	3	0	0	0	0	logfile

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