Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WS1	32740	2024-02-21	2022-01-28	3.4	3.94	—	3.7	0.004	0.63	0.0	0.05	13.84	0.00	2.244	6.87	0.03	2.9	97.1	0.0	-0.86	0.79	0.78	2.61	3.7	0.005	0.67	0.0	0.05	14.75	0.00	2.043	9.20	2.09	5.2	94.8	0.0	-0.86	1.10	0.82	0.88	2.56	32212	4050	32	0	66	0	0	logfile
✔	7TRC	26085	2024-02-16	2022-01-28	3.3	3.10	—	3.3	0.003	0.64	0.0	0.04	17.83	0.00	2.121	8.21	0.21	4.2	95.8	0.0	-1.82	0.66	0.74	2.50	3.3	0.003	0.62	0.0	0.04	19.12	0.00	2.127	9.36	3.04	4.9	95.1	0.0	-1.12	0.47	0.68	0.77	1.76	14747	1599	10	92	0	0	0	logfile
✔	7TRG	26089	2024-02-22	2022-01-28	3.0	3.44	—	3.3	0.005	0.68	1.0	0.04	15.52	0.00	1.932	4.57	0.19	3.8	96.2	0.0	1.26	0.64	0.86	2.32	3.3	0.003	0.59	0.0	0.04	16.25	0.00	1.071	4.44	1.12	3.7	96.3	0.0	1.14	1.13	0.63	0.86	1.96	33714	4377	25	0	24	8	0	logfile
✔	7WS5	32744	2024-02-21	2022-01-28	3.7	4.15	—	3.9	0.003	0.61	0.0	0.05	13.30	0.00	2.168	9.14	0.09	2.5	97.5	0.1	-0.07	0.83	0.84	1.95	3.8	0.003	0.59	0.0	0.04	14.54	0.00	2.153	10.73	1.54	3.8	96.2	0.0	-0.03	1.27	0.84	0.86	1.99	30228	3800	26	0	38	0	0	logfile
✔	7WS8	32750	2024-02-22	2022-01-28	3.0	3.47	—	3.2	0.004	0.58	0.0	0.05	13.67	0.00	2.136	8.35	0.05	2.7	97.3	0.0	0.05	0.78	0.82	2.52	3.2	0.003	0.56	0.0	0.04	15.09	0.00	2.182	8.68	1.41	2.8	97.2	0.0	0.45	0.43	0.76	0.83	2.45	34684	4286	24	0	48	0	0	logfile
✔	7WSA	32752	2024-02-13	2022-01-28	3.0	3.42	—	3.4	0.004	0.78	0.0	0.05	13.94	0.01	2.185	11.53	0.00	2.9	97.1	0.0	-1.59	0.76	0.71	2.04	3.3	0.004	0.81	0.0	0.05	15.64	0.00	2.189	13.55	1.99	3.9	96.1	0.0	0.30	0.73	0.78	0.77	1.78	6567	796	4	0	7	0	0	logfile
✔	7TR9	26083	2024-02-22	2022-01-28	3.9	4.30	—	4.1	0.003	0.68	2.0	0.05	13.73	0.00	1.387	16.20	0.17	8.7	90.9	0.4	-2.44	0.80	0.72	0.00	4.0	0.006	0.88	0.0	0.05	16.61	0.01	1.053	35.76	3.00	11.3	88.3	0.4	-2.45	2.98	0.83	0.80	0.79	34208	4192	20	75	2	0	0	logfile
✔	7QXW	14204	2024-02-23	2022-01-27	4.1	4.60	—	4.4	0.004	0.82	7.0	0.04	10.46	0.00	1.367	50.97	1.03	10.8	88.8	0.3	-4.29	0.81	0.75	—	4.4	0.004	0.77	0.0	0.05	12.51	0.00	1.873	19.12	0.05	8.9	91.0	0.1	-1.30	1.65	0.83	0.81	—	103867	13346	53	0	9	0	0	logfile
✔	7WRV	32736	2024-02-13	2022-01-27	2.47	2.59	—	2.7	0.003	0.60	0.0	0.04	14.42	0.00	2.061	3.93	0.58	2.9	97.1	0.0	0.27	0.47	0.74	3.28	2.6	0.003	0.56	0.0	0.05	16.22	0.00	2.033	4.56	1.74	5.2	94.8	0.0	-0.54	1.46	0.49	0.78	2.27	6359	427	3	0	0	0	3092	logfile
✔	7QYB	14211	2024-02-23	2022-01-27	4.1	4.73	—	4.3	0.005	1.08	4.0	0.06	11.75	0.01	1.183	9.46	1.40	9.2	90.1	0.7	-5.13	0.86	0.78	—	4.3	0.004	0.80	0.0	0.05	12.75	0.00	1.880	18.81	0.05	10.0	89.9	0.2	-1.15	2.92	0.88	0.84	—	105037	13488	52	0	11	0	0	logfile
✔	7WRo	32734	2024-02-13	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.42	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.003	0.63	0.0	0.04	15.27	0.00	2.244	13.06	6.07	5.2	94.8	0.0	-1.11	0.32	0.59	0.77	2.44	3179	412	3	0	0	0	0	logfile
✔	7QY7	14209	2024-02-22	2022-01-27	4.7	5.28	—	4.8	0.007	1.21	6.0	0.06	11.96	0.01	1.015	21.97	1.70	10.3	88.9	0.8	-4.62	0.85	0.74	—	4.8	0.004	0.77	0.0	0.04	12.64	0.00	1.999	25.87	0.05	10.1	89.7	0.1	-1.52	0.94	0.87	0.81	—	99911	12865	51	0	6	0	0	logfile
✔	7TQT	26071	2024-02-22	2022-01-27	4.1	4.20	—	4.1	0.021	1.84	3.0	0.10	9.91	0.01	2.300	1.77	0.00	2.0	98.0	0.0	0.55	0.48	0.80	—	4.1	0.005	0.79	0.0	0.05	12.83	0.01	2.088	19.48	0.03	4.7	95.3	0.0	-0.97	0.90	0.46	0.81	—	33877	4212	27	0	211	0	0	logfile
✔	7QXU	14203	2024-02-23	2022-01-27	4.3	4.78	—	4.5	0.005	1.06	5.0	0.06	11.72	0.01	1.092	13.60	1.08	8.6	91.0	0.4	-4.57	0.80	0.71	—	4.5	0.003	0.73	0.0	0.04	12.83	0.00	1.952	14.88	0.05	7.8	92.1	0.1	-0.92	1.66	0.82	0.81	—	103719	13349	53	0	12	0	0	logfile
✔	7QXX	14205	2024-02-22	2022-01-27	4.4	4.95	—	4.7	0.009	1.22	5.0	0.06	12.00	0.01	1.006	17.58	1.25	9.8	89.8	0.4	-4.44	0.82	0.75	—	4.7	0.003	0.75	0.0	0.04	12.79	0.00	1.872	17.20	0.04	8.2	91.8	0.1	-1.05	0.89	0.84	0.82	—	100121	12891	53	0	12	0	0	logfile
✔	7QYA	14210	2024-02-22	2022-01-27	4.8	7.07	—	5.9	0.006	1.12	6.0	0.06	11.58	0.01	1.130	17.58	1.03	9.6	89.9	0.5	-4.72	0.89	0.76	—	5.9	0.003	0.75	0.0	0.04	12.15	0.00	2.021	22.32	0.02	8.8	91.1	0.1	-1.02	1.61	0.90	0.82	—	101325	13066	51	0	5	0	0	logfile
✔	7TQU	26072	2024-02-18	2022-01-27	3.8	3.89	3.57	3.8	0.021	1.81	0.0	0.10	9.74	0.01	2.375	0.92	0.00	2.1	97.9	0.0	0.71	0.38	0.84	3.42	3.8	0.004	0.68	0.0	0.04	15.19	0.00	2.103	11.48	3.17	3.5	96.5	0.0	-0.34	0.75	0.36	0.84	2.60	20891	2544	17	0	217	0	0	logfile
✔	7WRQ	32735	2024-02-13	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.29	1.0	0.08	15.48	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.71	0.0	0.04	15.29	0.00	2.255	4.25	1.96	12.0	87.8	0.1	-3.77	0.60	0.87	0.87	1.91	6247	798	5	0	7	0	0	logfile
✔	7WRY	32737	2024-02-13	2022-01-27	3.28	3.44	—	3.4	0.006	0.91	0.0	0.06	16.47	0.01	2.313	3.13	0.29	6.7	93.3	0.0	-2.76	0.58	0.84	4.11	3.4	0.003	0.56	0.0	0.04	15.65	0.00	2.223	7.50	3.16	5.4	94.6	0.0	-1.38	0.39	0.57	0.85	4.28	3267	413	4	0	3	0	0	logfile
✔	7WRi	32727	2024-02-13	2022-01-26	3.03	3.18	—	3.2	0.003	0.58	1.0	0.04	15.54	0.00	2.099	6.76	2.03	6.0	94.0	0.0	-4.19	0.73	0.80	2.23	3.1	0.003	0.59	0.0	0.04	16.73	0.00	1.994	7.95	2.61	7.5	92.5	0.0	-0.85	0.39	0.75	0.83	1.67	6431	790	4	0	2	0	0	logfile

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