Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TMR	26000	2024-02-14	2022-01-19	3.5	3.65	—	3.5	0.003	0.62	0.0	0.04	12.90	0.00	2.124	12.17	0.12	3.3	96.7	0.0	1.40	0.75	0.79	2.12	3.5	0.003	0.64	0.0	0.04	15.45	0.00	2.056	13.63	3.71	3.3	96.7	0.0	1.08	1.26	0.76	0.79	1.76	57795	8224	32	0	1	0	0	logfile
✔	7QV6	14168	2024-02-13	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.40	0.0	0.06	11.88	0.00	2.320	1.65	0.79	0.0	100.0	0.0	0.64	0.40	0.40	0.86	5.54	4842	306	18	0	0	0	2556	logfile
✔	7QV5	14167	2024-02-13	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.36	0.0	0.06	12.41	0.00	2.576	1.08	0.00	2.1	97.9	0.0	-1.49	0.86	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	7TMP	25998	2024-02-21	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.91	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.004	0.55	0.0	0.04	14.17	0.00	1.916	8.96	2.35	3.2	96.8	0.0	1.11	0.27	0.80	0.86	2.96	32105	4805	16	0	2	0	0	logfile
✔	7TMM	25996	2024-02-22	2022-01-19	3.5	3.65	—	3.6	0.005	0.54	0.0	0.04	11.40	0.00	2.195	7.40	0.04	3.8	96.2	0.0	1.51	0.82	0.84	3.00	3.6	0.003	0.52	0.0	0.04	12.92	0.00	2.170	7.19	2.49	3.2	96.8	0.0	1.64	1.05	0.82	0.84	2.51	33713	5236	17	0	1	0	0	logfile
✔	7TLY	25990	2024-02-13	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	12.98	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.60	0.0	0.04	13.34	0.01	2.213	4.05	2.46	2.0	98.0	0.0	-1.14	1.03	0.68	0.83	5.07	3105	408	4	0	4	0	0	logfile
✔	7TMQ	25999	2024-02-21	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.4	0.003	0.52	0.0	0.04	14.02	0.00	1.988	9.28	2.27	2.4	97.6	0.0	1.33	0.26	0.79	0.86	2.88	31642	4736	16	0	2	0	0	logfile
✔	7QUS	14153	2024-02-20	2022-01-18	2.39	2.81	—	2.7	0.004	0.60	0.0	0.04	15.76	0.00	2.212	5.50	1.46	3.6	96.3	0.2	0.03	0.70	0.85	3.68	2.7	0.004	0.62	0.0	0.05	15.47	0.00	2.095	4.63	2.44	3.7	96.1	0.2	-0.35	0.42	0.73	0.89	4.71	26742	3303	18	0	69	0	0	logfile
✔	7TL9	25984	2024-02-19	2022-01-18	3.5	3.83	3.52	3.5	0.004	0.74	0.0	0.06	14.38	0.01	2.260	3.60	0.00	3.9	96.1	0.0	-0.78	0.85	0.83	2.56	3.5	0.006	0.61	0.0	0.05	13.90	0.00	2.168	7.50	0.70	4.9	95.1	0.0	0.05	0.34	0.85	0.85	2.43	25016	3083	24	0	60	0	0	logfile
✔	7QUN	14149	2024-02-18	2022-01-18	2.1	2.22	—	2.2	0.005	0.72	0.0	0.05	15.64	0.00	2.230	4.57	0.88	2.1	97.9	0.0	0.29	0.63	0.77	5.98	2.2	0.003	0.61	0.0	0.05	15.44	0.00	2.266	1.98	0.92	1.7	98.3	0.0	0.25	0.21	0.74	0.86	6.08	21094	2773	8	0	4	0	0	logfile
✔	7QUR	14152	2024-02-20	2022-01-18	2.27	2.80	—	2.7	0.005	0.68	0.0	0.05	15.74	0.00	2.145	4.96	1.01	3.9	96.0	0.1	-0.13	0.73	0.87	4.69	2.7	0.004	0.60	0.0	0.05	14.97	0.00	2.184	3.73	1.25	4.0	95.8	0.2	-0.23	0.26	0.69	0.86	4.97	27174	3303	21	0	75	282	0	logfile
✔	7TLJ	25989	2024-02-20	2022-01-18	2.91	3.77	—	3.6	0.007	0.80	0.0	0.05	13.86	0.01	2.009	3.99	1.34	3.1	96.9	0.1	0.26	0.75	0.86	4.48	3.6	0.003	0.56	0.0	0.04	14.23	0.00	1.980	6.55	0.78	2.4	97.5	0.1	1.56	0.47	0.68	0.86	3.98	27753	1774	14	0	12	0	13511	logfile
✔	7QUQ	14151	2024-02-17	2022-01-18	2.6	2.44	—	2.8	0.009	0.94	0.0	0.05	13.76	0.01	2.144	15.78	0.10	4.7	95.3	0.0	-1.38	0.64	0.65	1.63	2.8	0.004	0.74	0.0	0.05	17.03	0.01	2.090	23.40	2.83	5.4	94.6	0.0	-1.14	1.95	0.67	0.70	1.45	19095	2457	12	0	6	0	0	logfile
✔	7TLC	25987	2024-02-18	2022-01-18	2.83	3.28	—	3.2	0.013	1.82	3.0	0.10	13.37	0.02	2.518	0.07	1.54	5.3	94.5	0.2	-1.18	0.34	0.47	4.12	3.2	0.003	0.59	0.0	0.04	15.12	0.00	2.130	5.75	2.12	3.2	96.8	0.0	0.31	0.54	0.50	0.70	3.41	23058	2948	3	0	0	0	0	logfile
✔	7TL1	25983	2024-02-19	2022-01-18	3.5	3.79	3.47	3.6	0.004	0.69	0.0	0.05	11.66	0.01	2.302	3.28	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.004	0.52	0.0	0.04	12.32	0.00	2.150	6.64	0.51	3.8	96.2	0.0	0.37	0.28	0.85	0.85	2.44	25109	3138	11	0	38	0	0	logfile
✔	7TLA	25985	2024-02-18	2022-01-18	3.13	3.36	—	3.3	0.012	1.76	3.0	0.09	13.37	0.01	2.522	0.09	1.12	6.0	93.7	0.3	-1.09	0.58	0.61	4.05	3.3	0.006	0.65	0.0	0.05	14.77	0.00	2.183	6.89	1.90	4.0	96.0	0.0	0.02	0.60	0.76	0.85	3.28	23052	2948	3	0	0	0	0	logfile
✔	7WN1	32619	2024-02-13	2022-01-17	3.11	3.41	—	3.3	0.007	0.65	0.0	0.04	13.83	0.00	2.246	7.77	0.00	3.7	96.3	0.0	1.00	0.64	0.87	3.64	3.3	0.003	0.55	0.0	0.04	15.99	0.00	2.143	8.41	3.02	3.7	96.3	0.0	1.84	0.89	0.65	0.89	3.19	3901	493	3	0	1	0	0	logfile
✔	7TKM	25974	2024-02-18	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.004	0.82	0.0	0.00	5.62	0.00	2.105	12.83	0.00	9.6	90.0	0.3	-0.78	1.55	0.82	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKQ	25978	2024-02-18	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.009	1.21	0.0	0.00	7.52	0.01	1.933	34.86	0.00	13.6	85.9	0.5	-2.21	0.83	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TL0	25982	2024-02-23	2022-01-17	3.06	3.65	—	3.4	0.008	0.73	0.0	0.05	13.54	0.01	1.856	1.95	1.91	4.9	95.1	0.0	-0.77	0.82	0.82	3.75	3.3	0.003	0.58	0.0	0.04	14.08	0.00	2.032	4.94	1.60	3.8	96.2	0.0	0.13	0.61	0.83	0.83	3.21	40326	2667	21	0	12	0	19866	logfile

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