Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QKY	14057	2024-02-13	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.005	0.78	0.0	0.05	16.52	0.00	2.181	6.58	1.21	6.2	93.8	0.0	-3.23	0.95	0.39	0.85	7.57	5760	396	6	0	0	0	2862	logfile
✔	7QKV	14054	2024-02-14	2021-12-19	3.23	2.84	3.19	3.3	0.011	1.92	0.0	0.09	12.28	0.02	2.512	0.73	0.00	3.5	96.5	0.0	-2.11	0.37	0.72	4.94	3.3	0.003	0.59	0.0	0.05	15.84	0.00	2.020	10.44	2.22	4.1	95.9	0.0	-2.44	1.34	0.41	0.82	5.98	9585	621	9	0	0	0	4887	logfile
✔	7QL5	14064	2024-02-17	2021-12-19	2.5	2.78	2.57	2.8	0.008	0.95	2.0	0.05	18.22	0.00	2.199	8.49	1.03	3.7	96.3	0.0	0.95	0.70	0.87	4.71	2.8	0.003	0.54	0.0	0.04	15.10	0.00	2.149	8.08	1.25	2.8	97.2	0.0	1.35	0.33	0.73	0.89	4.30	17028	1989	19	0	50	2	0	logfile
✔	7QL0	14059	2024-02-13	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.1	0.002	0.55	0.0	0.05	14.54	0.00	2.136	5.01	1.39	0.7	99.3	0.0	-1.65	1.25	0.41	0.84	5.80	6390	414	6	0	0	0	3258	logfile
✔	7T9F	25756	2024-02-15	2021-12-19	3.23	3.51	3.49	3.5	0.004	0.84	0.0	0.09	13.18	0.00	1.988	5.27	0.28	3.6	96.4	0.0	0.16	0.64	0.80	3.49	3.5	0.003	0.62	0.0	0.08	14.94	0.00	1.940	10.47	0.71	4.3	95.7	0.0	0.99	0.51	0.65	0.84	3.44	13640	890	2	0	0	0	6958	logfile
✔	7QKW	14055	2024-02-13	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.53	0.0	0.05	16.60	0.00	2.475	2.77	2.54	5.4	94.6	0.0	-2.80	1.30	0.42	0.85	6.06	4707	306	6	0	0	0	2439	logfile
✔	7T9G	25757	2024-02-15	2021-12-19	2.83	3.04	2.97	3.0	0.003	0.55	0.0	0.08	12.68	0.00	2.023	5.64	0.00	4.1	95.9	0.0	1.69	0.67	0.87	3.83	3.0	0.004	0.57	0.0	0.08	15.02	0.00	2.068	4.98	0.99	4.3	95.7	0.0	1.68	1.26	0.68	0.89	3.87	13649	890	6	0	4	5	6958	logfile
✔	7QL1	14060	2024-02-13	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.004	0.74	0.0	0.05	15.06	0.00	2.262	8.51	3.12	3.3	96.7	0.0	-2.38	1.66	0.38	0.81	4.29	1671	219	3	0	0	0	0	logfile
✔	7T9i	25758	2024-02-19	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.78	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.003	0.65	0.0	0.04	15.01	0.00	1.913	9.43	2.34	6.2	93.8	0.0	-0.24	1.12	0.74	0.72	2.61	23529	1532	11	0	8	0	11557	logfile
✔	7QKS	14050	2024-02-14	2021-12-18	3.1	3.39	3.08	3.3	0.005	0.74	0.0	0.05	14.59	0.01	2.210	4.65	0.10	1.8	98.2	0.0	0.65	0.75	0.87	2.33	3.3	0.003	0.52	0.0	0.04	15.48	0.00	2.295	5.61	1.78	1.8	98.2	0.0	1.32	0.35	0.74	0.89	1.84	9339	1199	1	0	1	0	0	logfile
✔	7T9B	25755	2024-02-18	2021-12-18	3.72	4.06	3.76	3.9	0.021	1.77	0.0	0.13	12.57	0.01	2.289	1.04	0.98	3.7	95.6	0.7	0.40	0.81	0.86	2.63	3.9	0.003	0.66	0.0	0.04	12.95	0.00	2.134	7.16	1.43	4.3	95.6	0.1	-0.23	1.38	0.81	0.85	2.34	21592	2595	42	0	101	0	0	logfile
✔	7T9A	25754	2024-02-18	2021-12-18	3.54	3.88	3.56	3.7	0.022	1.74	3.0	0.13	13.07	0.02	2.315	1.30	2.68	3.6	95.7	0.7	0.35	0.80	0.84	3.40	3.7	0.003	0.61	0.0	0.04	12.65	0.00	2.146	6.33	0.85	4.3	95.5	0.1	-0.01	2.42	0.80	0.85	2.83	21517	2598	41	0	96	0	0	logfile
✔	7QKR	14049	2024-02-14	2021-12-18	3.2	3.37	3.13	3.3	0.007	0.86	0.0	0.06	15.13	0.01	2.084	6.53	0.40	1.8	98.2	0.0	0.20	0.73	0.88	2.71	3.3	0.003	0.49	0.0	0.04	15.63	0.00	2.047	4.21	1.09	1.8	98.2	0.0	0.93	0.34	0.73	0.89	2.15	9403	1199	1	0	4	0	0	logfile
✔	7T96	25752	2024-02-15	2021-12-18	3.22	2.43	—	2.2	0.008	0.94	3.0	0.06	12.64	0.00	2.091	11.18	0.35	7.3	92.7	0.0	-0.99	0.77	0.77	2.54	2.2	0.003	0.65	0.0	0.04	15.25	0.00	2.098	8.94	3.57	5.0	95.0	0.0	0.15	0.43	0.79	0.80	1.62	8450	1122	6	0	2	0	0	logfile
✔	7QKo	14048	2024-02-17	2021-12-18	2.9	3.22	3.03	3.2	0.006	0.84	0.0	0.05	18.35	0.00	2.242	8.07	1.25	1.9	98.1	0.0	0.18	0.58	0.76	3.35	3.2	0.003	0.56	0.0	0.04	15.46	0.00	2.213	7.69	3.09	2.7	97.3	0.0	0.67	0.39	0.61	0.80	3.11	17042	1996	17	0	49	0	0	logfile
✔	7T90	25749	2024-02-15	2021-12-17	3.32	3.71	—	3.6	0.006	0.95	3.0	0.06	12.71	0.00	2.146	10.23	0.23	5.1	94.9	0.0	-0.77	0.69	0.79	2.80	3.6	0.003	0.62	0.0	0.04	15.36	0.00	2.076	7.93	3.00	4.4	95.6	0.0	0.00	0.48	0.70	0.83	2.09	8451	1124	6	0	1	1	0	logfile
✔	7QKi	14043	2024-02-13	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.003	0.57	0.0	0.05	11.60	0.00	2.124	3.82	0.00	4.7	95.3	0.0	-1.67	0.71	0.38	0.80	5.38	7074	456	6	0	0	0	3606	logfile
✔	7QKH	14042	2024-02-13	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	6.0	0.004	0.99	0.0	0.22	15.46	0.00	2.133	8.39	1.11	8.3	91.7	0.0	-2.81	2.23	0.33	0.71	4.39	3105	204	6	0	0	0	1593	logfile
✔	7QKG	14041	2024-02-13	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.61	0.0	0.05	13.59	0.00	2.243	4.46	0.00	6.4	93.6	0.0	-1.39	1.16	0.35	0.83	4.80	2469	162	3	0	0	0	1278	logfile
✔	7QJV	14023	2024-02-16	2021-12-17	3.29	3.75	2.41	3.4	0.012	2.13	7.0	0.11	11.77	0.01	2.497	0.72	0.13	9.5	90.5	0.0	-2.07	0.44	0.77	2.75	3.4	0.003	0.55	0.0	0.05	12.72	0.00	2.054	5.78	0.51	4.8	95.2	0.0	-1.83	0.54	0.44	0.78	3.92	13860	900	12	0	0	0	7056	logfile

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