Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T9T	25767	2024-02-21	2021-12-20	3.7	4.42	—	3.8	0.005	0.83	0.0	0.05	16.30	0.00	2.036	2.19	0.12	5.2	94.7	0.1	-1.22	0.83	0.77	1.56	3.8	0.003	0.64	0.0	0.04	14.91	0.00	2.137	8.15	1.58	5.7	94.3	0.0	-0.88	0.66	0.84	0.83	1.74	24065	2976	33	0	66	0	0	logfile
✔	7QND	14075	2024-02-16	2021-12-20	3.4	3.55	—	3.4	0.003	0.46	0.0	0.04	10.27	0.00	2.210	4.79	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.67	0.0	0.04	13.55	0.00	2.107	10.48	2.02	1.6	98.4	0.0	1.27	2.21	0.76	0.87	3.69	16810	1995	19	0	33	0	0	logfile
✔	7TAD	25771	2024-02-14	2021-12-20	3.6	3.82	—	3.8	0.003	0.70	0.0	0.04	14.28	0.01	2.126	10.39	0.00	2.8	97.2	0.0	0.68	0.62	0.64	1.42	3.8	0.002	0.59	0.0	0.04	16.03	0.00	2.191	8.10	1.12	1.7	98.3	0.0	2.74	0.49	0.64	0.67	1.20	8550	1113	8	0	4	0	0	logfile
✔	7WCM	32424	2024-02-14	2021-12-20	2.33	2.14	—	2.2	0.003	0.61	0.0	0.04	14.07	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.003	0.56	0.0	0.04	15.87	0.00	2.199	3.42	1.02	2.2	97.8	0.0	1.50	0.32	0.63	0.87	4.05	8232	1047	5	0	1	0	0	logfile
✔	7QNA	14072	2024-02-16	2021-12-20	3.0	3.58	—	3.3	0.003	0.48	0.0	0.04	11.46	0.00	2.271	4.69	0.76	1.2	98.8	0.0	1.88	0.76	0.86	3.66	3.3	0.003	0.66	0.0	0.04	13.34	0.00	2.168	7.88	1.45	2.0	98.0	0.0	1.26	2.63	0.77	0.89	4.11	14777	1763	16	0	29	0	0	logfile
✔	7QNC	14074	2024-02-16	2021-12-20	2.9	3.35	—	3.1	0.003	0.58	0.0	0.05	12.80	0.01	2.276	3.01	0.48	1.7	98.3	0.0	0.92	0.79	0.88	4.62	3.1	0.005	0.91	1.0	0.05	14.13	0.00	1.774	9.99	1.97	1.5	98.5	0.0	1.70	1.17	0.79	0.90	4.52	15861	1881	19	0	39	0	0	logfile
✔	7QN9	14071	2024-02-16	2021-12-20	2.9	3.47	—	3.1	0.003	0.64	0.0	0.05	13.26	0.01	2.164	6.25	0.48	2.1	97.9	0.0	0.56	0.78	0.86	4.01	3.2	0.003	0.70	0.0	0.04	13.96	0.00	2.159	9.29	1.74	2.0	98.0	0.0	1.33	2.78	0.79	0.89	4.06	15696	1889	19	0	31	0	0	logfile
✔	7QN8	14070	2024-02-16	2021-12-20	3.1	3.39	—	3.2	0.003	0.46	0.0	0.04	10.68	0.00	2.247	3.93	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.005	0.64	0.0	0.05	13.03	0.00	2.171	8.07	1.52	1.8	98.2	0.0	1.85	0.80	0.80	0.91	4.05	16755	1992	19	0	32	0	0	logfile
✔	7QL6	14065	2024-02-16	2021-12-19	3.23	3.65	3.39	3.6	0.004	0.67	1.0	0.05	15.26	0.00	2.258	7.26	0.60	3.3	96.7	0.0	0.66	0.72	0.80	3.00	3.5	0.003	0.58	0.0	0.04	14.04	0.00	2.161	10.02	2.07	2.9	97.1	0.0	0.67	0.64	0.72	0.82	3.10	16617	1990	15	0	38	0	0	logfile
✔	7QKW	14055	2024-02-13	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.53	0.0	0.05	16.60	0.00	2.475	2.77	2.54	5.4	94.6	0.0	-2.80	1.30	0.42	0.85	6.06	4707	306	6	0	0	0	2439	logfile
✔	7QL0	14059	2024-02-13	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.1	0.002	0.55	0.0	0.05	14.54	0.00	2.136	5.01	1.39	0.7	99.3	0.0	-1.65	1.25	0.41	0.84	5.80	6390	414	6	0	0	0	3258	logfile
✔	7QKX	14056	2024-02-13	2021-12-19	3.16	3.10	2.99	3.2	0.011	1.82	0.0	0.09	10.51	0.01	2.523	0.00	0.00	3.3	96.7	0.0	-1.48	0.39	0.79	6.00	3.2	0.002	0.53	0.0	0.05	12.55	0.00	2.085	3.67	0.52	0.7	99.3	0.0	-1.48	0.81	0.42	0.86	5.33	6822	438	6	0	0	0	3480	logfile
✔	7QKU	14053	2024-02-13	2021-12-19	2.57	2.42	2.48	2.7	0.011	1.83	5.0	0.10	11.69	0.01	2.516	0.28	0.00	5.2	94.8	0.0	-1.72	0.47	0.88	5.27	2.7	0.004	1.30	1.0	0.05	17.77	0.00	2.344	4.97	1.52	2.7	97.3	0.0	-2.05	1.57	0.46	0.91	5.37	3456	453	6	0	0	0	0	logfile
✔	7QL3	14062	2024-02-13	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.003	0.81	0.0	0.05	13.77	0.01	2.131	4.53	2.15	4.1	95.9	0.0	-2.57	1.14	0.43	0.83	4.68	3246	426	6	0	0	0	0	logfile
✔	7T9i	25758	2024-02-19	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.78	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.003	0.65	0.0	0.04	15.01	0.00	1.913	9.43	2.34	6.2	93.8	0.0	-0.24	1.12	0.74	0.72	2.61	23529	1532	11	0	8	0	11557	logfile
✔	7QL2	14061	2024-02-13	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.3	0.003	0.54	0.0	0.05	12.51	0.00	2.548	1.31	1.48	10.4	89.6	0.0	-3.05	1.13	0.23	0.72	3.90	2286	150	3	0	0	0	1179	logfile
✔	7QKY	14057	2024-02-13	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.005	0.78	0.0	0.05	16.52	0.00	2.181	6.58	1.21	6.2	93.8	0.0	-3.23	0.95	0.39	0.85	7.57	5760	396	6	0	0	0	2862	logfile
✔	7WCD	32421	2024-02-22	2021-12-19	3.3	3.43	—	3.4	0.004	0.65	3.0	0.05	14.74	0.00	2.164	13.31	0.24	4.9	95.1	0.0	0.01	0.76	0.75	2.77	3.4	0.003	0.56	0.0	0.05	14.38	0.00	2.181	6.75	1.65	4.4	95.6	0.0	-0.16	0.41	0.79	0.79	2.79	33525	4284	12	0	33	0	0	logfile
✔	7QKZ	14058	2024-02-13	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.011	3.64	0.0	0.38	18.80	0.01	2.113	13.00	1.01	2.5	97.5	0.0	-1.04	5.47	0.34	0.64	6.35	1701	99	9	0	0	0	891	logfile
✔	7T9J	25759	2024-02-18	2021-12-19	2.79	3.38	—	3.2	0.006	0.86	0.0	0.06	13.01	0.01	2.225	4.49	0.17	1.7	98.2	0.0	0.20	0.77	0.71	1.43	3.1	0.003	0.61	0.0	0.04	14.50	0.00	2.178	8.33	1.89	2.3	97.7	0.0	0.66	1.11	0.80	0.82	2.56	21960	2703	24	0	58	0	0	logfile

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