Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WD8	32434	2024-02-13	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.72	0.0	0.04	12.54	0.00	2.195	14.59	0.00	3.1	96.7	0.2	-0.50	1.64	0.63	0.67	—	4029	524	4	0	0	0	0	logfile
✔	7WDF	32437	2024-02-21	2021-12-21	3.9	4.20	—	4.0	0.002	0.51	0.0	0.04	7.63	0.00	2.170	7.49	0.00	4.3	95.6	0.1	-1.73	0.54	0.40	0.73	4.0	0.004	0.79	0.0	0.05	14.37	0.00	2.083	21.74	2.88	5.1	94.8	0.0	-0.96	1.60	0.76	0.72	0.58	31998	4101	7	0	0	0	0	logfile
✔	7TBF	25797	2024-02-13	2021-12-21	3.1	3.60	3.16	3.4	0.008	0.87	0.0	0.05	13.38	0.01	2.064	6.47	0.00	14.9	84.6	0.5	-3.53	0.83	0.81	3.20	3.4	0.004	0.74	0.0	0.04	15.30	0.00	2.226	8.39	3.58	14.2	85.3	0.5	-2.51	0.99	0.84	0.85	2.79	6617	857	6	0	2	0	0	logfile
✔	7TAW	25788	2024-02-25	2021-12-21	2.7	3.38	—	3.2	0.003	0.67	0.0	0.04	16.07	0.01	2.234	7.30	0.06	4.5	95.5	0.0	-1.53	0.80	0.76	2.53	3.2	0.003	0.66	0.0	0.04	17.73	0.00	2.138	13.06	1.57	5.3	94.7	0.0	-0.26	1.26	0.78	0.82	2.24	51399	6242	24	160	0	0	0	logfile
✔	7WD9	32435	2024-02-17	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.63	0.0	0.04	13.64	0.00	1.827	11.38	1.34	4.5	95.4	0.1	-0.67	1.31	0.75	0.68	0.98	69720	4533	9	0	0	0	34404	logfile
✔	7TB4	25792	2024-02-20	2021-12-21	3.29	4.32	3.44	3.7	0.003	0.61	0.0	0.05	14.80	0.00	2.173	7.13	0.03	7.1	92.6	0.3	-1.22	0.86	0.78	2.24	3.7	0.005	0.64	0.0	0.04	14.53	0.00	2.131	10.73	1.21	8.2	91.5	0.3	-0.99	1.02	0.90	0.88	2.26	26897	3329	21	0	59	0	0	logfile
✔	7TAP	25780	2024-02-18	2021-12-21	2.8	3.00	—	3.0	0.013	1.47	4.0	0.07	15.28	0.01	2.225	8.19	1.37	1.3	98.6	0.1	0.26	0.64	0.81	3.41	3.0	0.004	0.55	0.0	0.04	15.98	0.00	2.122	9.60	1.67	1.4	98.5	0.0	1.41	2.34	0.66	0.84	3.18	22520	2915	22	0	8	0	0	logfile
✔	7WCP	32427	2024-02-20	2021-12-20	3.01	3.31	—	3.2	0.014	1.27	11.0	0.08	14.69	0.01	1.667	6.80	1.57	7.6	92.2	0.2	-2.72	0.70	0.82	2.24	3.2	0.003	0.61	0.0	0.04	15.58	0.00	2.072	9.29	2.02	6.6	93.4	0.0	-1.18	1.17	0.68	0.82	2.23	28328	3676	9	0	0	0	0	logfile
✔	7WCK	32423	2024-02-13	2021-12-20	3.49	3.79	—	3.6	0.008	1.35	1.0	0.07	13.91	0.01	2.057	11.02	0.28	7.6	90.7	1.7	-3.09	0.67	0.79	2.16	3.6	0.003	0.81	0.0	0.05	15.00	0.01	2.245	16.84	2.25	7.1	92.4	0.5	-2.39	0.50	0.68	0.81	2.01	3245	416	3	0	0	0	0	logfile
✔	7QLA	14066	2024-02-13	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.8	0.003	0.69	0.0	0.04	15.87	0.00	2.148	12.97	2.85	5.3	94.7	0.0	-0.41	2.24	0.72	0.76	1.49	6837	874	2	0	0	0	0	logfile
✔	7WCZ	32430	2024-02-20	2021-12-20	3.5	3.70	—	3.7	0.008	0.70	0.0	0.05	12.67	0.01	1.948	4.38	0.12	3.6	96.4	0.0	-3.24	0.65	0.64	1.48	3.6	0.005	0.75	0.0	0.05	15.84	0.00	2.032	14.24	2.87	6.1	93.9	0.0	-0.61	1.53	0.70	0.74	1.32	28679	3668	5	0	0	0	0	logfile
✔	7TAi	25775	2024-02-15	2021-12-20	3.2	3.59	3.19	3.5	0.006	0.86	0.0	0.05	19.15	0.01	2.087	12.50	1.06	2.8	97.2	0.0	0.97	0.71	0.84	2.65	3.5	0.005	0.66	0.0	0.04	15.71	0.00	2.071	11.25	1.59	3.7	96.3	0.0	1.43	2.41	0.77	0.87	2.45	11109	1272	6	0	18	0	0	logfile
✔	7WCR	32428	2024-02-13	2021-12-20	3.5	3.71	—	4.0	0.003	0.71	0.0	0.05	12.88	0.01	1.713	4.50	1.28	2.7	96.9	0.3	-2.76	0.57	0.64	1.03	3.7	0.003	0.71	0.0	0.04	15.77	0.00	2.131	11.30	3.28	4.2	95.8	0.0	-0.78	0.80	0.60	0.69	1.36	4880	628	3	0	0	0	0	logfile
✔	7QNB	14073	2024-02-16	2021-12-20	3.1	3.62	—	3.3	0.003	0.46	0.0	0.04	11.20	0.00	2.241	5.47	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.003	0.60	0.0	0.04	12.66	0.00	2.153	8.35	1.57	2.5	97.5	0.0	1.38	2.14	0.78	0.89	3.75	14793	1767	15	0	24	0	0	logfile
✔	7WCN	32425	2024-02-14	2021-12-20	2.87	2.37	—	2.8	0.005	0.70	1.0	0.05	14.77	0.00	2.257	4.26	0.00	3.9	96.1	0.0	0.37	0.59	0.83	3.43	2.8	0.003	0.55	0.0	0.04	16.83	0.00	2.260	4.57	2.82	3.4	96.6	0.0	0.91	0.33	0.58	0.84	2.85	8252	1049	5	0	1	0	0	logfile
✔	7QN9	14071	2024-02-16	2021-12-20	2.9	3.47	—	3.1	0.003	0.64	0.0	0.05	13.26	0.01	2.164	6.25	0.48	2.1	97.9	0.0	0.56	0.78	0.86	4.01	3.2	0.003	0.70	0.0	0.04	13.96	0.00	2.159	9.29	1.74	2.0	98.0	0.0	1.33	2.78	0.79	0.89	4.06	15696	1889	19	0	31	0	0	logfile
✔	7QNC	14074	2024-02-16	2021-12-20	2.9	3.35	—	3.1	0.003	0.58	0.0	0.05	12.80	0.01	2.276	3.01	0.48	1.7	98.3	0.0	0.92	0.79	0.88	4.62	3.1	0.005	0.91	1.0	0.05	14.13	0.00	1.774	9.99	1.97	1.5	98.5	0.0	1.70	1.17	0.79	0.90	4.52	15861	1881	19	0	39	0	0	logfile
✔	7WCM	32424	2024-02-14	2021-12-20	2.33	2.14	—	2.2	0.003	0.61	0.0	0.04	14.07	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.003	0.56	0.0	0.04	15.87	0.00	2.199	3.42	1.02	2.2	97.8	0.0	1.50	0.32	0.63	0.87	4.05	8232	1047	5	0	1	0	0	logfile
✔	7QN6	14068	2024-02-16	2021-12-20	2.9	2.96	—	2.9	0.003	0.46	0.0	0.04	12.10	0.00	2.205	5.05	0.39	0.9	99.1	0.0	2.50	0.74	0.86	4.53	2.8	0.004	0.68	0.0	0.05	15.03	0.00	2.039	8.13	2.47	1.8	98.2	0.0	1.63	1.47	0.76	0.90	4.53	16821	1995	20	0	32	0	0	logfile
✔	7TAC	25769	2024-02-15	2021-12-20	3.6	3.94	—	3.9	0.004	0.86	0.0	0.05	14.71	0.01	2.149	12.22	0.00	2.3	97.7	0.0	0.94	0.66	0.69	1.31	3.9	0.003	0.64	0.0	0.04	16.86	0.00	2.158	8.84	2.03	2.5	97.5	0.0	2.80	0.60	0.66	0.71	1.03	11842	1526	12	0	6	0	0	logfile

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