Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WEC	32446	2024-02-21	2021-12-23	3.3	3.63	—	3.5	0.005	0.73	1.0	0.05	15.35	0.00	1.785	9.83	0.26	6.6	93.2	0.1	-1.96	0.78	0.81	2.62	3.5	0.003	0.66	0.0	0.05	15.13	0.00	1.788	9.06	2.83	5.9	94.1	0.1	-1.52	0.39	0.76	0.81	2.42	32217	3984	33	0	78	0	0	logfile
✔	7TCA	25807	2024-02-22	2021-12-23	3.85	5.12	4.09	4.0	0.003	0.64	0.0	0.05	14.12	0.00	2.132	9.78	0.00	7.0	92.5	0.4	-0.96	0.88	0.77	1.29	4.0	0.003	0.65	0.0	0.04	14.86	0.00	2.085	16.67	1.72	8.2	91.4	0.4	-1.11	0.59	0.89	0.81	1.25	33705	4244	24	0	56	0	0	logfile
✔	7WEB	32445	2024-02-21	2021-12-23	3.7	3.99	—	3.7	0.004	0.65	1.0	0.05	16.00	0.00	2.109	11.89	0.15	5.7	94.2	0.1	-1.30	0.84	0.82	1.60	3.7	0.004	0.64	0.0	0.05	15.08	0.00	2.089	12.98	1.92	6.4	93.5	0.1	-1.21	0.43	0.84	0.83	1.36	30413	3754	30	0	74	0	0	logfile
✔	7WE8	32442	2024-02-20	2021-12-23	3.5	4.24	—	4.0	0.004	0.66	0.0	0.05	14.73	0.00	1.600	10.93	0.26	5.5	94.4	0.1	-1.57	0.83	0.82	1.52	4.0	0.002	0.62	0.0	0.04	14.36	0.00	2.147	11.28	2.20	5.4	94.5	0.1	-1.24	1.17	0.83	0.83	1.33	28585	3522	27	0	69	0	0	logfile
✔	7WE9	32443	2024-02-21	2021-12-23	3.6	3.89	—	3.8	0.005	0.70	1.0	0.05	16.56	0.00	2.118	12.27	0.17	8.2	91.7	0.1	-2.16	0.76	0.73	1.62	3.7	0.003	0.63	0.0	0.05	14.97	0.00	2.124	11.62	2.44	6.8	93.1	0.1	-1.93	1.14	0.75	0.70	1.12	32043	3987	32	0	72	0	0	logfile
✔	7Qo7	14086	2024-02-20	2021-12-23	3.02	3.67	—	3.4	0.004	0.64	0.0	0.05	21.44	0.00	2.165	6.51	0.07	6.0	93.8	0.2	-0.66	0.80	0.82	2.27	3.4	0.002	0.60	0.0	0.05	15.46	0.00	2.141	7.51	0.84	6.6	93.2	0.3	-0.90	0.43	0.79	0.83	2.26	26865	3295	29	0	81	0	0	logfile
✔	7WEF	32449	2024-02-13	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.003	0.64	0.0	0.04	14.83	0.00	2.179	8.31	4.19	6.6	93.4	0.0	-1.42	0.35	0.55	0.77	1.98	3328	432	3	0	0	0	0	logfile
✔	7Qo1	14080	2024-02-16	2021-12-23	4.4	3.65	4.44	3.5	0.012	1.85	2.0	0.09	18.41	0.02	2.337	2.24	1.51	5.3	94.6	0.2	-1.82	0.79	0.60	—	3.5	0.003	0.71	0.0	0.04	17.81	0.00	1.328	14.72	0.00	4.9	95.1	0.0	-0.87	1.05	0.79	0.60	—	14179	1694	9	62	1	0	0	logfile
✔	7TBZ	25802	2024-02-15	2021-12-22	4.3	4.56	4.01	4.0	0.002	0.56	0.0	0.04	14.93	0.00	2.207	6.66	0.00	3.8	96.2	0.1	-2.61	0.70	0.77	—	4.0	0.003	0.67	0.0	0.04	12.03	0.00	2.157	9.99	0.00	5.9	94.1	0.0	0.20	2.65	0.72	0.82	—	13275	1788	4	0	10	0	0	logfile
✔	7TBH	25799	2024-02-25	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.17	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.004	0.70	0.0	0.04	13.92	0.00	2.124	9.25	1.62	3.2	96.8	0.0	2.85	0.97	0.81	0.87	3.03	51768	6288	48	0	0	0	0	logfile
✔	7WE6	32440	2024-02-25	2021-12-22	3.2	3.87	—	3.4	0.007	0.91	0.0	0.05	18.66	0.01	2.152	6.70	5.96	6.8	93.2	0.0	-3.43	0.90	0.85	2.16	3.3	0.004	0.63	0.0	0.04	18.04	0.00	2.135	10.02	3.80	7.5	92.5	0.0	-0.24	1.20	0.91	0.87	1.96	48324	6209	26	164	0	0	0	logfile
✔	7TC0	25803	2024-02-16	2021-12-22	3.1	3.02	2.78	3.2	0.003	0.59	3.0	0.04	15.73	0.01	1.817	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	3.2	0.003	0.64	0.0	0.04	15.03	0.00	2.151	6.74	2.70	5.0	95.0	0.0	0.69	1.31	0.77	0.89	2.28	13809	1781	4	0	11	0	0	logfile
✔	7TBY	25801	2024-02-15	2021-12-22	4.0	4.05	3.80	3.9	0.003	0.61	0.0	0.04	15.63	0.00	2.155	7.36	0.00	5.0	95.0	0.0	-2.45	0.70	0.79	—	3.8	0.003	0.67	0.0	0.04	14.91	0.00	2.107	9.36	2.44	5.8	94.2	0.0	0.24	1.35	0.72	0.83	—	13281	1788	4	0	10	0	0	logfile
✔	7TBW	25800	2024-02-16	2021-12-22	3.1	3.10	2.87	3.2	0.003	0.62	0.0	0.04	14.88	0.00	2.101	8.64	1.23	5.2	94.8	0.0	-2.02	0.67	0.79	1.46	3.2	0.003	0.63	0.0	0.04	15.05	0.00	1.983	9.85	2.95	5.8	94.2	0.0	0.33	0.72	0.71	0.87	2.28	15338	1928	4	0	14	0	0	logfile
✔	7WD9	32435	2024-02-17	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.63	0.0	0.04	13.64	0.00	1.827	11.38	1.34	4.5	95.4	0.1	-0.67	1.31	0.75	0.68	0.98	69720	4533	9	0	0	0	34404	logfile
✔	7TBF	25797	2024-02-13	2021-12-21	3.1	3.60	3.16	3.4	0.008	0.87	0.0	0.05	13.38	0.01	2.064	6.47	0.00	14.9	84.6	0.5	-3.53	0.83	0.81	3.20	3.4	0.004	0.74	0.0	0.04	15.30	0.00	2.226	8.39	3.58	14.2	85.3	0.5	-2.51	0.99	0.84	0.85	2.79	6617	857	6	0	2	0	0	logfile
✔	7TAW	25788	2024-02-25	2021-12-21	2.7	3.38	—	3.2	0.003	0.67	0.0	0.04	16.07	0.01	2.234	7.30	0.06	4.5	95.5	0.0	-1.53	0.80	0.76	2.53	3.2	0.003	0.66	0.0	0.04	17.73	0.00	2.138	13.06	1.57	5.3	94.7	0.0	-0.26	1.26	0.78	0.82	2.24	51399	6242	24	160	0	0	0	logfile
✔	7TAP	25780	2024-02-18	2021-12-21	2.8	3.00	—	3.0	0.013	1.47	4.0	0.07	15.28	0.01	2.225	8.19	1.37	1.3	98.6	0.1	0.26	0.64	0.81	3.41	3.0	0.004	0.55	0.0	0.04	15.98	0.00	2.122	9.60	1.67	1.4	98.5	0.0	1.41	2.34	0.66	0.84	3.18	22520	2915	22	0	8	0	0	logfile
✔	7TAS	25783	2024-02-13	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.33	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.67	0.0	0.04	13.75	0.00	2.240	4.96	2.03	3.7	96.3	0.0	-0.15	0.53	0.65	0.85	4.26	3147	417	4	0	3	0	0	logfile
✔	7WDK	32438	2024-02-14	2021-12-21	3.05	3.04	—	3.1	0.004	0.74	0.0	0.05	14.65	0.01	2.201	14.24	0.51	7.8	92.2	0.0	-1.03	0.58	0.65	2.10	3.1	0.004	0.64	0.0	0.04	16.24	0.00	2.163	11.07	2.16	7.0	93.0	0.0	-0.76	0.31	0.59	0.66	1.85	9461	1215	2	0	0	0	0	logfile

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