Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WEA	32444	2024-02-21	2021-12-23	3.3	3.61	—	3.5	0.004	0.78	0.0	0.05	15.89	0.00	2.111	10.04	0.03	5.8	94.1	0.1	-2.05	0.80	0.81	2.48	3.5	0.003	0.65	1.0	0.05	14.87	0.00	2.038	9.53	1.62	6.6	93.3	0.1	-1.42	0.34	0.80	0.82	2.13	30413	3754	30	0	74	0	0	logfile
✔	7WEB	32445	2024-02-21	2021-12-23	3.7	3.99	—	3.7	0.004	0.65	1.0	0.05	16.00	0.00	2.109	11.89	0.15	5.7	94.2	0.1	-1.30	0.84	0.82	1.60	3.7	0.004	0.64	0.0	0.05	15.08	0.00	2.089	12.98	1.92	6.4	93.5	0.1	-1.21	0.43	0.84	0.83	1.36	30413	3754	30	0	74	0	0	logfile
✔	7WEE	32448	2024-02-13	2021-12-23	4.0	4.09	—	4.1	0.005	0.72	0.0	0.04	12.68	0.01	2.116	8.35	0.00	4.5	95.5	0.0	-1.60	0.48	0.80	—	4.0	0.004	0.71	0.0	0.05	15.53	0.00	2.073	11.84	3.77	7.6	92.4	0.0	-1.48	0.45	0.48	0.82	—	3350	429	3	0	0	0	0	logfile
✔	7Qo1	14080	2024-02-16	2021-12-23	4.4	3.65	4.44	3.5	0.012	1.85	2.0	0.09	18.41	0.02	2.337	2.24	1.51	5.3	94.6	0.2	-1.82	0.79	0.60	—	3.5	0.003	0.71	0.0	0.04	17.81	0.00	1.328	14.72	0.00	4.9	95.1	0.0	-0.87	1.05	0.79	0.60	—	14179	1694	9	62	1	0	0	logfile
✔	7TC7	25804	2024-02-18	2021-12-23	2.9	2.75	—	2.9	0.007	0.58	0.0	0.04	13.89	0.00	1.792	14.53	0.17	2.3	97.7	0.0	1.00	0.72	0.86	4.97	2.9	0.002	0.41	0.0	0.04	15.77	0.00	1.945	16.73	1.40	2.1	97.9	0.0	1.68	0.31	0.73	0.87	4.30	20567	2113	8	0	4	0	3200	logfile
✔	7WED	32447	2024-02-13	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.005	1.33	1.0	0.07	16.81	0.01	2.258	8.50	4.36	7.3	92.7	0.0	-1.19	1.13	0.57	0.78	1.96	3358	431	3	0	0	0	0	logfile
✔	7WE9	32443	2024-02-21	2021-12-23	3.6	3.89	—	3.8	0.005	0.70	1.0	0.05	16.56	0.00	2.118	12.27	0.17	8.2	91.7	0.1	-2.16	0.76	0.73	1.62	3.7	0.003	0.63	0.0	0.05	14.97	0.00	2.124	11.62	2.44	6.8	93.1	0.1	-1.93	1.14	0.75	0.70	1.12	32043	3987	32	0	72	0	0	logfile
✔	7TC8	25805	2024-02-18	2021-12-23	2.4	2.46	—	2.5	0.008	0.68	0.0	0.05	17.52	0.00	1.659	12.50	3.31	2.3	97.7	0.0	0.38	0.74	0.86	5.19	2.5	0.002	0.41	0.0	0.04	17.26	0.00	1.889	19.46	1.91	1.8	98.2	0.0	2.10	0.28	0.74	0.86	5.02	20567	2113	8	0	4	0	3200	logfile
✔	7WE6	32440	2024-02-25	2021-12-22	3.2	3.87	—	3.4	0.007	0.91	0.0	0.05	18.66	0.01	2.152	6.70	5.96	6.8	93.2	0.0	-3.43	0.90	0.85	2.16	3.3	0.004	0.63	0.0	0.04	18.04	0.00	2.135	10.02	3.80	7.5	92.5	0.0	-0.24	1.20	0.91	0.87	1.96	48324	6209	26	164	0	0	0	logfile
✔	7TBH	25799	2024-02-25	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.17	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.004	0.70	0.0	0.04	13.92	0.00	2.124	9.25	1.62	3.2	96.8	0.0	2.85	0.97	0.81	0.87	3.03	51768	6288	48	0	0	0	0	logfile
✔	7TC0	25803	2024-02-16	2021-12-22	3.1	3.02	2.78	3.2	0.003	0.59	3.0	0.04	15.73	0.01	1.817	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	3.2	0.003	0.64	0.0	0.04	15.03	0.00	2.151	6.74	2.70	5.0	95.0	0.0	0.69	1.31	0.77	0.89	2.28	13809	1781	4	0	11	0	0	logfile
✔	7TBY	25801	2024-02-15	2021-12-22	4.0	4.05	3.80	3.9	0.003	0.61	0.0	0.04	15.63	0.00	2.155	7.36	0.00	5.0	95.0	0.0	-2.45	0.70	0.79	—	3.8	0.003	0.67	0.0	0.04	14.91	0.00	2.107	9.36	2.44	5.8	94.2	0.0	0.24	1.35	0.72	0.83	—	13281	1788	4	0	10	0	0	logfile
✔	7TBZ	25802	2024-02-15	2021-12-22	4.3	4.56	4.01	4.0	0.002	0.56	0.0	0.04	14.93	0.00	2.207	6.66	0.00	3.8	96.2	0.1	-2.61	0.70	0.77	—	4.0	0.003	0.67	0.0	0.04	12.03	0.00	2.157	9.99	0.00	5.9	94.1	0.0	0.20	2.65	0.72	0.82	—	13275	1788	4	0	10	0	0	logfile
✔	7TBW	25800	2024-02-16	2021-12-22	3.1	3.10	2.87	3.2	0.003	0.62	0.0	0.04	14.88	0.00	2.101	8.64	1.23	5.2	94.8	0.0	-2.02	0.67	0.79	1.46	3.2	0.003	0.63	0.0	0.04	15.05	0.00	1.983	9.85	2.95	5.8	94.2	0.0	0.33	0.72	0.71	0.87	2.28	15338	1928	4	0	14	0	0	logfile
✔	7WD8	32434	2024-02-13	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.72	0.0	0.04	12.54	0.00	2.195	14.59	0.00	3.1	96.7	0.2	-0.50	1.64	0.63	0.67	—	4029	524	4	0	0	0	0	logfile
✔	7TB3	25791	2024-02-25	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.32	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.004	0.65	0.0	0.04	15.13	0.00	2.200	8.60	0.92	2.4	97.6	0.0	3.01	0.98	0.74	0.86	2.03	48000	5832	24	0	0	0	0	logfile
✔	7TAS	25783	2024-02-13	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.33	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.67	0.0	0.04	13.75	0.00	2.240	4.96	2.03	3.7	96.3	0.0	-0.15	0.53	0.65	0.85	4.26	3147	417	4	0	3	0	0	logfile
✔	7WDK	32438	2024-02-14	2021-12-21	3.05	3.04	—	3.1	0.004	0.74	0.0	0.05	14.65	0.01	2.201	14.24	0.51	7.8	92.2	0.0	-1.03	0.58	0.65	2.10	3.1	0.004	0.64	0.0	0.04	16.24	0.00	2.163	11.07	2.16	7.0	93.0	0.0	-0.76	0.31	0.59	0.66	1.85	9461	1215	2	0	0	0	0	logfile
✔	7TAX	25789	2024-02-20	2021-12-21	2.8	3.31	—	3.3	0.003	0.67	0.0	0.04	16.22	0.01	2.236	6.32	0.00	4.6	95.4	0.0	-0.99	0.64	0.56	0.11	3.2	0.003	0.66	0.0	0.04	18.64	0.00	2.097	12.13	1.61	4.8	95.2	0.0	-0.01	1.22	0.78	0.85	2.41	27855	3349	14	99	0	0	0	logfile
✔	7TAP	25780	2024-02-18	2021-12-21	2.8	3.00	—	3.0	0.013	1.47	4.0	0.07	15.28	0.01	2.225	8.19	1.37	1.3	98.6	0.1	0.26	0.64	0.81	3.41	3.0	0.004	0.55	0.0	0.04	15.98	0.00	2.122	9.60	1.67	1.4	98.5	0.0	1.41	2.34	0.66	0.84	3.18	22520	2915	22	0	8	0	0	logfile

• ← previous
• Page 260 of 588
• next →