Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WG6	32478	2024-02-20	2021-12-28	3.4	3.67	—	3.6	0.005	0.79	14.0	0.06	15.84	0.00	2.097	7.27	1.88	6.3	93.3	0.3	-1.13	0.72	0.78	2.29	3.6	0.006	0.73	0.0	0.05	14.84	0.00	2.157	6.91	1.84	5.2	94.7	0.1	-0.50	0.50	0.81	0.83	2.33	26808	3288	27	0	71	0	0	logfile
✔	7WGC	32483	2024-02-13	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.72	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.003	0.65	0.0	0.04	16.13	0.00	2.128	13.40	2.00	5.3	94.7	0.0	0.00	0.36	0.56	0.55	0.77	6527	795	4	0	5	0	0	logfile
✔	7TCo	25815	2024-02-19	2021-12-27	4.19	4.96	—	4.3	0.005	1.06	0.0	0.06	18.06	0.01	2.228	2.57	0.00	6.4	93.5	0.1	-1.29	0.86	0.82	—	4.3	0.003	0.65	0.0	0.05	13.52	0.00	2.058	11.51	0.00	7.9	92.1	0.0	-0.54	0.53	0.86	0.84	—	23973	2979	27	0	57	0	0	logfile
✔	7TCN	25814	2024-02-19	2021-12-27	4.1	4.79	—	4.1	0.005	0.84	0.0	0.05	15.30	0.01	2.037	4.00	0.12	6.1	93.9	0.0	-1.35	0.84	0.79	—	4.1	0.005	0.74	0.0	0.05	13.24	0.00	2.060	12.46	0.00	7.8	92.2	0.0	-1.70	1.28	0.86	0.85	—	23747	2961	29	0	50	0	0	logfile
✔	7TCP	25816	2024-02-16	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.006	0.60	0.0	0.04	12.89	0.00	2.125	6.46	2.46	4.0	96.0	0.0	1.96	0.27	0.71	0.83	2.42	14992	1912	12	0	12	0	0	logfile
✔	7WFF	32464	2024-02-21	2021-12-26	3.59	3.67	—	3.6	0.006	0.94	1.0	0.08	14.28	0.01	2.203	4.83	0.26	9.0	90.9	0.1	-4.02	0.60	0.79	2.16	3.6	0.003	0.75	0.0	0.05	16.48	0.00	2.160	16.29	2.86	8.0	92.0	0.0	-1.21	1.21	0.60	0.79	1.65	32124	4065	20	0	4	0	0	logfile
✔	7WFG	32465	2024-02-14	2021-12-26	4.33	4.89	—	4.3	0.006	1.01	1.0	0.06	11.46	0.01	2.204	8.95	1.08	12.3	87.5	0.2	-5.06	0.68	0.68	—	4.3	0.003	0.78	0.0	0.05	12.56	0.01	2.095	21.21	0.36	11.0	89.0	0.1	-2.60	1.58	0.71	0.75	—	9836	1246	11	0	125	0	0	logfile
✔	7WF3	32459	2024-02-18	2021-12-25	3.4	3.01	—	3.0	0.012	1.22	32.0	0.09	15.74	0.01	2.074	4.00	7.69	3.7	96.1	0.1	-1.54	0.56	0.77	3.55	3.0	0.002	0.50	0.0	0.04	15.46	0.00	2.200	4.03	2.01	1.7	98.2	0.1	0.74	1.02	0.69	0.88	3.11	22100	2744	25	0	8	116	0	logfile
✔	7WF4	32460	2024-02-18	2021-12-25	3.4	2.86	—	2.8	0.009	1.05	8.0	0.07	14.45	0.01	2.085	6.38	6.01	3.8	95.7	0.4	-1.41	0.61	0.73	3.58	2.8	0.004	0.62	0.0	0.04	15.43	0.00	2.123	5.16	2.58	3.3	96.3	0.4	0.66	1.39	0.72	0.85	3.62	22143	2760	25	0	7	100	0	logfile
✔	7QoK	14093	2024-02-20	2021-12-24	3.38	3.33	—	3.3	0.004	0.71	6.0	0.05	13.99	0.01	2.066	4.28	0.55	4.3	95.7	0.0	-2.41	0.78	0.83	3.29	3.3	0.009	0.73	0.0	0.05	15.70	0.01	2.034	9.52	2.41	6.6	93.4	0.0	-1.44	0.46	0.83	0.88	3.12	88842	11022	30	0	90	0	0	logfile
✔	7QoG	14089	2024-02-17	2021-12-24	3.09	3.06	—	3.1	0.008	0.89	0.0	0.06	15.01	0.01	2.194	7.17	0.27	2.9	97.1	0.0	-3.72	0.64	0.85	3.38	3.1	0.003	0.56	0.0	0.04	17.00	0.00	2.149	9.04	2.80	2.0	98.0	0.0	1.51	0.46	0.66	0.85	2.61	123492	15192	60	0	0	0	0	logfile
✔	7Qoo	14098	2024-02-19	2021-12-24	4.6	3.65	—	2.5	0.005	0.99	0.0	0.05	11.19	0.01	2.363	2.24	0.15	3.2	96.8	0.0	-5.80	0.71	0.55	—	2.3	0.003	0.73	0.0	0.04	13.05	0.00	2.081	9.99	0.04	2.5	97.5	0.0	0.92	1.56	0.74	0.64	—	24085	2958	15	0	15	0	0	logfile
✔	7WEA	32444	2024-02-21	2021-12-23	3.3	3.61	—	3.5	0.004	0.78	0.0	0.05	15.89	0.00	2.111	10.04	0.03	5.8	94.1	0.1	-2.05	0.80	0.81	2.48	3.5	0.003	0.65	1.0	0.05	14.87	0.00	2.038	9.53	1.62	6.6	93.3	0.1	-1.42	0.34	0.80	0.82	2.13	30413	3754	30	0	74	0	0	logfile
✔	7TCA	25807	2024-02-22	2021-12-23	3.85	5.12	4.09	4.0	0.003	0.64	0.0	0.05	14.12	0.00	2.132	9.78	0.00	7.0	92.5	0.4	-0.96	0.88	0.77	1.29	4.0	0.003	0.65	0.0	0.04	14.86	0.00	2.085	16.67	1.72	8.2	91.4	0.4	-1.11	0.59	0.89	0.81	1.25	33705	4244	24	0	56	0	0	logfile
✔	7WE7	32441	2024-02-21	2021-12-23	3.8	4.19	—	3.9	0.005	0.76	2.0	0.06	15.07	0.00	1.378	12.84	0.87	5.0	94.9	0.1	-1.30	0.84	0.78	1.49	3.9	0.003	0.60	0.0	0.04	14.50	0.00	2.086	13.40	1.30	5.3	94.6	0.1	-0.80	0.45	0.85	0.81	1.27	32095	3981	33	0	74	0	0	logfile
✔	7Qo9	14087	2024-02-14	2021-12-23	3.88	4.22	—	4.1	0.004	0.76	6.0	0.06	16.66	0.01	2.179	10.13	1.29	9.2	90.3	0.5	-1.18	0.68	0.78	1.87	4.1	0.003	0.69	0.0	0.04	16.38	0.00	2.184	12.33	1.98	9.7	90.0	0.3	-1.15	1.56	0.68	0.78	1.83	9180	1166	6	0	9	3	0	logfile
✔	7WEC	32446	2024-02-21	2021-12-23	3.3	3.63	—	3.5	0.005	0.73	1.0	0.05	15.35	0.00	1.785	9.83	0.26	6.6	93.2	0.1	-1.96	0.78	0.81	2.62	3.5	0.003	0.66	0.0	0.05	15.13	0.00	1.788	9.06	2.83	5.9	94.1	0.1	-1.52	0.39	0.76	0.81	2.42	32217	3984	33	0	78	0	0	logfile
✔	7Qo7	14086	2024-02-20	2021-12-23	3.02	3.67	—	3.4	0.004	0.64	0.0	0.05	21.44	0.00	2.165	6.51	0.07	6.0	93.8	0.2	-0.66	0.80	0.82	2.27	3.4	0.002	0.60	0.0	0.05	15.46	0.00	2.141	7.51	0.84	6.6	93.2	0.3	-0.90	0.43	0.79	0.83	2.26	26865	3295	29	0	81	0	0	logfile
✔	7TCi	25813	2024-02-16	2021-12-23	3.9	4.11	—	4.1	0.006	0.62	0.0	0.04	13.44	0.00	2.282	6.98	2.95	2.2	97.8	0.0	2.98	0.64	0.81	1.85	4.1	0.003	0.62	0.0	0.04	16.68	0.00	2.171	10.09	5.70	2.1	97.9	0.0	2.24	1.30	0.66	0.79	1.26	15084	1916	16	0	16	0	0	logfile
✔	7Qo1	14080	2024-02-16	2021-12-23	4.4	3.65	4.44	3.5	0.012	1.85	2.0	0.09	18.41	0.02	2.337	2.24	1.51	5.3	94.6	0.2	-1.82	0.79	0.60	—	3.5	0.003	0.71	0.0	0.04	17.81	0.00	1.328	14.72	0.00	4.9	95.1	0.0	-0.87	1.05	0.79	0.60	—	14179	1694	9	62	1	0	0	logfile

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