Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WHS	32510	2024-02-17	2021-12-31	3.1	3.49	—	3.5	0.005	0.78	1.0	0.06	16.31	0.01	2.197	8.40	0.33	8.2	91.8	0.0	-1.09	0.68	0.79	3.09	3.5	0.003	0.58	0.0	0.05	17.27	0.00	2.090	9.56	2.39	7.4	92.6	0.0	-1.32	1.55	0.70	0.82	3.01	17232	2196	12	0	12	0	0	logfile
✔	7TDH	25829	2024-02-15	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.85	0.00	2.254	4.64	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.029	2.61	35.0	0.10	20.94	0.02	0.912	155.22	26.89	44.2	54.2	1.6	-7.24	2.46	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	7WHP	32507	2024-02-17	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	15.13	0.01	2.209	8.40	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.003	0.54	0.0	0.04	16.53	0.00	2.068	8.54	2.76	2.6	97.3	0.0	-0.46	1.53	0.30	0.77	2.41	17038	2114	4	0	6	0	0	logfile
✔	7WHV	32512	2024-02-15	2021-12-31	2.8	2.22	—	2.7	0.016	1.29	0.0	0.08	12.09	0.01	2.100	7.72	0.60	7.0	92.9	0.1	-3.98	0.65	0.78	4.48	2.7	0.005	0.70	0.0	0.05	15.13	0.00	2.024	13.20	3.17	5.6	94.4	0.0	-0.76	1.24	0.66	0.80	3.51	12331	1520	4	0	7	0	0	logfile
✔	7TD6	25824	2024-02-13	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.006	0.84	0.0	0.05	18.31	0.00	2.252	12.18	4.03	8.5	91.5	0.0	-4.02	2.29	0.43	0.77	4.22	5575	690	5	0	0	0	0	logfile
✔	7WHi	32500	2024-02-20	2021-12-30	2.93	2.59	—	3.1	0.004	0.64	0.0	0.05	10.72	0.02	2.213	7.54	5.48	5.5	94.3	0.2	-3.55	0.77	0.75	2.17	2.2	0.003	0.76	0.0	0.05	14.25	0.00	2.130	11.28	3.86	6.6	93.4	0.0	-1.41	0.71	0.80	0.82	2.48	28350	3578	10	0	36	0	0	logfile
✔	7WHB	32498	2024-02-22	2021-12-30	2.67	3.79	—	3.4	0.003	0.60	0.0	0.05	13.91	0.00	2.193	6.93	0.27	6.8	93.2	0.0	-0.98	0.86	0.82	2.39	3.4	0.003	0.67	0.0	0.05	14.99	0.00	2.107	8.27	1.79	6.3	93.7	0.0	-0.64	0.39	0.84	0.81	1.88	34209	4331	30	0	54	0	0	logfile
✔	7TDD	25825	2024-02-17	2021-12-30	3.5	2.37	2.70	2.8	0.029	2.07	183.0	0.29	12.65	0.01	2.192	1.90	0.55	1.5	98.4	0.1	-0.52	0.67	0.64	2.40	2.7	0.004	0.58	0.0	0.04	15.47	0.00	1.972	7.14	1.20	2.0	97.9	0.1	2.32	3.04	0.67	0.68	2.47	20031	1211	2	0	0	0	10025	logfile
✔	7WHK	32503	2024-02-20	2021-12-30	3.01	2.59	—	3.1	0.004	0.70	1.0	0.05	11.43	0.01	2.208	7.01	6.30	5.6	94.1	0.3	-3.45	0.78	0.76	2.28	3.0	0.003	0.75	0.0	0.05	13.98	0.00	2.005	11.57	3.05	6.0	94.0	0.0	-1.44	0.70	0.79	0.81	2.62	29150	3697	11	0	28	0	0	logfile
✔	7WHJ	32501	2024-02-20	2021-12-30	3.27	2.36	—	2.1	0.003	0.48	0.0	0.04	10.21	0.01	2.217	6.84	1.96	4.4	95.5	0.1	-3.44	0.74	0.73	2.56	2.1	0.003	0.69	0.0	0.05	13.63	0.00	2.140	10.60	3.02	6.8	93.1	0.0	-1.64	0.63	0.77	0.78	2.46	27788	3499	9	0	40	0	0	logfile
✔	7WHD	32499	2024-02-22	2021-12-30	2.65	3.19	—	3.9	0.006	0.71	0.0	0.05	14.15	0.00	1.554	11.40	0.93	9.1	90.8	0.1	-1.88	0.61	0.35	0.03	3.1	0.004	0.88	0.0	0.05	16.23	0.01	2.092	12.77	3.31	7.6	92.4	0.0	-1.65	1.55	0.85	0.82	1.87	34209	4331	29	0	54	0	0	logfile
✔	7WH8	32497	2024-02-13	2021-12-30	3.11	3.31	—	3.2	0.004	0.71	1.0	0.05	14.34	0.01	2.233	11.28	2.61	8.6	91.0	0.4	-2.16	0.70	0.79	3.20	3.3	0.004	0.66	0.0	0.05	15.74	0.00	2.166	7.31	2.78	8.6	91.4	0.0	-1.31	1.18	0.70	0.82	3.34	5479	715	3	0	0	0	0	logfile
✔	7WGZ	32493	2024-02-18	2021-12-29	4.5	5.31	—	4.5	0.007	0.71	0.0	0.05	15.46	0.00	1.262	7.93	0.04	5.2	94.7	0.1	-0.64	0.84	0.79	—	4.5	0.003	0.58	0.0	0.04	12.95	0.00	2.125	13.11	0.00	5.7	94.2	0.1	-0.10	0.47	0.86	0.83	—	21920	2879	11	0	25	0	0	logfile
✔	7WGY	32492	2024-02-18	2021-12-29	4.0	4.56	—	4.2	0.008	0.77	0.0	0.05	15.64	0.01	2.104	7.65	0.00	5.5	94.2	0.3	-0.80	0.80	0.77	—	4.2	0.002	0.56	0.0	0.04	14.39	0.00	2.056	8.49	0.71	3.9	95.8	0.3	0.35	0.44	0.84	0.83	—	22914	2879	14	0	31	0	0	logfile
✔	7WGB	32482	2024-02-23	2021-12-28	3.5	4.11	—	3.8	0.004	0.65	1.0	0.05	15.29	0.00	2.126	12.90	0.05	6.9	93.1	0.1	-0.98	0.80	0.79	1.70	3.8	0.003	0.63	0.0	0.04	15.55	0.00	2.083	13.89	1.85	6.9	93.0	0.2	-1.06	0.31	0.79	0.76	1.44	36719	4482	31	0	81	0	0	logfile
✔	7WGR	32485	2024-02-15	2021-12-28	2.92	3.14	—	3.2	0.007	0.99	3.0	0.06	14.71	0.01	1.877	5.78	0.54	4.6	95.1	0.4	-0.28	0.69	0.78	2.90	3.2	0.004	0.61	0.0	0.04	16.82	0.00	1.878	8.11	2.42	4.2	95.7	0.1	-0.16	0.46	0.70	0.82	2.86	13614	1700	4	0	6	0	0	logfile
✔	7WG7	32479	2024-02-20	2021-12-28	4.0	4.39	—	4.2	0.005	0.88	0.0	0.06	19.05	0.01	2.237	6.84	0.07	7.8	92.2	0.0	-2.10	0.86	0.78	—	4.2	0.003	0.79	1.0	0.05	16.24	0.00	2.152	13.60	2.07	8.3	91.7	0.0	-1.49	1.14	0.87	0.79	—	27041	3313	25	0	73	0	0	logfile
✔	7WGC	32483	2024-02-13	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.72	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.003	0.65	0.0	0.04	16.13	0.00	2.128	13.40	2.00	5.3	94.7	0.0	0.00	0.36	0.56	0.55	0.77	6527	795	4	0	5	0	0	logfile
✔	7WGE	32484	2024-02-13	2021-12-28	3.4	3.56	—	3.6	0.003	0.63	0.0	0.04	15.02	0.01	2.182	11.60	0.28	6.8	93.1	0.1	-0.43	0.62	0.65	1.29	3.6	0.003	0.75	0.0	0.04	17.33	0.00	1.951	11.75	2.08	6.8	93.1	0.1	-1.45	2.91	0.67	0.74	1.33	6460	804	3	0	2	0	0	logfile
✔	7WG9	32481	2024-02-19	2021-12-28	3.5	3.81	—	3.8	0.003	0.61	0.0	0.05	14.26	0.00	2.144	7.98	0.00	5.4	94.6	0.0	-0.87	0.76	0.78	1.85	3.8	0.006	0.73	0.0	0.05	15.41	0.00	2.171	9.52	2.73	6.6	93.4	0.0	-0.88	0.71	0.78	0.83	1.79	25769	3189	19	0	61	0	0	logfile

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