Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TDE	25826	2024-02-17	2021-12-31	3.2	2.37	3.26	2.2	0.006	0.68	0.0	0.04	12.53	0.01	2.312	1.69	0.52	1.8	98.2	0.0	0.04	0.68	0.74	3.07	2.3	0.003	0.51	0.0	0.03	15.31	0.00	1.998	4.85	1.04	2.1	97.9	0.0	2.80	1.85	0.69	0.75	2.76	17734	1075	2	0	0	0	8888	logfile
✔	7WHT	32511	2024-02-17	2021-12-31	3.5	3.75	—	3.7	0.006	0.90	2.0	0.06	18.72	0.01	1.473	13.07	1.38	9.5	90.5	0.0	-1.32	0.67	0.75	2.76	3.7	0.003	0.62	0.0	0.05	15.50	0.01	1.950	11.25	2.10	9.7	90.3	0.0	-1.40	1.16	0.78	0.81	2.23	16980	2160	12	0	12	0	0	logfile
✔	7WHW	32513	2024-02-15	2021-12-31	3.1	2.64	—	3.0	0.009	1.17	0.0	0.07	12.72	0.01	2.107	7.84	0.54	8.4	91.6	0.1	-5.16	0.62	0.76	3.64	3.0	0.003	0.66	0.0	0.04	14.70	0.00	1.970	13.50	2.63	6.9	93.1	0.0	-1.67	0.64	0.63	0.80	3.04	11978	1488	4	0	5	0	0	logfile
✔	7WHR	32509	2024-02-17	2021-12-31	3.4	4.06	—	4.0	0.003	0.60	0.0	0.05	13.11	0.00	2.190	10.13	0.00	7.4	92.6	0.0	-2.33	0.66	0.74	2.21	4.0	0.003	0.63	0.0	0.05	14.84	0.00	2.197	9.95	1.64	6.6	93.3	0.1	-2.43	0.34	0.63	0.70	1.91	16914	2184	6	0	0	0	0	logfile
✔	7WHK	32503	2024-02-20	2021-12-30	3.01	2.59	—	3.1	0.004	0.70	1.0	0.05	11.43	0.01	2.208	7.01	6.30	5.6	94.1	0.3	-3.45	0.78	0.76	2.28	3.0	0.003	0.75	0.0	0.05	13.98	0.00	2.005	11.57	3.05	6.0	94.0	0.0	-1.44	0.70	0.79	0.81	2.62	29150	3697	11	0	28	0	0	logfile
✔	7WH8	32497	2024-02-13	2021-12-30	3.11	3.31	—	3.2	0.004	0.71	1.0	0.05	14.34	0.01	2.233	11.28	2.61	8.6	91.0	0.4	-2.16	0.70	0.79	3.20	3.3	0.004	0.66	0.0	0.05	15.74	0.00	2.166	7.31	2.78	8.6	91.4	0.0	-1.31	1.18	0.70	0.82	3.34	5479	715	3	0	0	0	0	logfile
✔	7WHD	32499	2024-02-22	2021-12-30	2.65	3.19	—	3.9	0.006	0.71	0.0	0.05	14.15	0.00	1.554	11.40	0.93	9.1	90.8	0.1	-1.88	0.61	0.35	0.03	3.1	0.004	0.88	0.0	0.05	16.23	0.01	2.092	12.77	3.31	7.6	92.4	0.0	-1.65	1.55	0.85	0.82	1.87	34209	4331	29	0	54	0	0	logfile
✔	7WHB	32498	2024-02-22	2021-12-30	2.67	3.79	—	3.4	0.003	0.60	0.0	0.05	13.91	0.00	2.193	6.93	0.27	6.8	93.2	0.0	-0.98	0.86	0.82	2.39	3.4	0.003	0.67	0.0	0.05	14.99	0.00	2.107	8.27	1.79	6.3	93.7	0.0	-0.64	0.39	0.84	0.81	1.88	34209	4331	30	0	54	0	0	logfile
✔	7WHi	32500	2024-02-20	2021-12-30	2.93	2.59	—	3.1	0.004	0.64	0.0	0.05	10.72	0.02	2.213	7.54	5.48	5.5	94.3	0.2	-3.55	0.77	0.75	2.17	2.2	0.003	0.76	0.0	0.05	14.25	0.00	2.130	11.28	3.86	6.6	93.4	0.0	-1.41	0.71	0.80	0.82	2.48	28350	3578	10	0	36	0	0	logfile
✔	7WHJ	32501	2024-02-20	2021-12-30	3.27	2.36	—	2.1	0.003	0.48	0.0	0.04	10.21	0.01	2.217	6.84	1.96	4.4	95.5	0.1	-3.44	0.74	0.73	2.56	2.1	0.003	0.69	0.0	0.05	13.63	0.00	2.140	10.60	3.02	6.8	93.1	0.0	-1.64	0.63	0.77	0.78	2.46	27788	3499	9	0	40	0	0	logfile
✔	7TD6	25824	2024-02-13	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.006	0.84	0.0	0.05	18.31	0.00	2.252	12.18	4.03	8.5	91.5	0.0	-4.02	2.29	0.43	0.77	4.22	5575	690	5	0	0	0	0	logfile
✔	7TDD	25825	2024-02-17	2021-12-30	3.5	2.37	2.70	2.8	0.029	2.07	183.0	0.29	12.65	0.01	2.192	1.90	0.55	1.5	98.4	0.1	-0.52	0.67	0.64	2.40	2.7	0.004	0.58	0.0	0.04	15.47	0.00	1.972	7.14	1.20	2.0	97.9	0.1	2.32	3.04	0.67	0.68	2.47	20031	1211	2	0	0	0	10025	logfile
✔	7WGY	32492	2024-02-18	2021-12-29	4.0	4.56	—	4.2	0.008	0.77	0.0	0.05	15.64	0.01	2.104	7.65	0.00	5.5	94.2	0.3	-0.80	0.80	0.77	—	4.2	0.002	0.56	0.0	0.04	14.39	0.00	2.056	8.49	0.71	3.9	95.8	0.3	0.35	0.44	0.84	0.83	—	22914	2879	14	0	31	0	0	logfile
✔	7WGZ	32493	2024-02-18	2021-12-29	4.5	5.31	—	4.5	0.007	0.71	0.0	0.05	15.46	0.00	1.262	7.93	0.04	5.2	94.7	0.1	-0.64	0.84	0.79	—	4.5	0.003	0.58	0.0	0.04	12.95	0.00	2.125	13.11	0.00	5.7	94.2	0.1	-0.10	0.47	0.86	0.83	—	21920	2879	11	0	25	0	0	logfile
✔	7WGR	32485	2024-02-15	2021-12-28	2.92	3.14	—	3.2	0.007	0.99	3.0	0.06	14.71	0.01	1.877	5.78	0.54	4.6	95.1	0.4	-0.28	0.69	0.78	2.90	3.2	0.004	0.61	0.0	0.04	16.82	0.00	1.878	8.11	2.42	4.2	95.7	0.1	-0.16	0.46	0.70	0.82	2.86	13614	1700	4	0	6	0	0	logfile
✔	7WG9	32481	2024-02-19	2021-12-28	3.5	3.81	—	3.8	0.003	0.61	0.0	0.05	14.26	0.00	2.144	7.98	0.00	5.4	94.6	0.0	-0.87	0.76	0.78	1.85	3.8	0.006	0.73	0.0	0.05	15.41	0.00	2.171	9.52	2.73	6.6	93.4	0.0	-0.88	0.71	0.78	0.83	1.79	25769	3189	19	0	61	0	0	logfile
✔	7WG8	32480	2024-02-19	2021-12-28	3.9	4.23	—	4.0	0.003	0.59	0.0	0.04	13.84	0.00	2.155	7.08	0.00	5.0	95.0	0.0	-1.10	0.85	0.83	1.42	4.0	0.006	0.66	0.0	0.04	14.85	0.00	2.129	10.77	2.37	7.7	92.2	0.0	-0.94	1.12	0.86	0.84	1.20	25629	3189	12	0	51	0	0	logfile
✔	7WG6	32478	2024-02-20	2021-12-28	3.4	3.67	—	3.6	0.005	0.79	14.0	0.06	15.84	0.00	2.097	7.27	1.88	6.3	93.3	0.3	-1.13	0.72	0.78	2.29	3.6	0.006	0.73	0.0	0.05	14.84	0.00	2.157	6.91	1.84	5.2	94.7	0.1	-0.50	0.50	0.81	0.83	2.33	26808	3288	27	0	71	0	0	logfile
✔	7WGB	32482	2024-02-23	2021-12-28	3.5	4.11	—	3.8	0.004	0.65	1.0	0.05	15.29	0.00	2.126	12.90	0.05	6.9	93.1	0.1	-0.98	0.80	0.79	1.70	3.8	0.003	0.63	0.0	0.04	15.55	0.00	2.083	13.89	1.85	6.9	93.0	0.2	-1.06	0.31	0.79	0.76	1.44	36719	4482	31	0	81	0	0	logfile
✔	7WGE	32484	2024-02-13	2021-12-28	3.4	3.56	—	3.6	0.003	0.63	0.0	0.04	15.02	0.01	2.182	11.60	0.28	6.8	93.1	0.1	-0.43	0.62	0.65	1.29	3.6	0.003	0.75	0.0	0.04	17.33	0.00	1.951	11.75	2.08	6.8	93.1	0.1	-1.45	2.91	0.67	0.74	1.33	6460	804	3	0	2	0	0	logfile

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