Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QP9	14115	2024-02-15	2022-01-03	2.89	3.12	2.88	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.249	6.44	0.00	3.6	96.4	0.0	2.00	0.58	0.81	3.64	3.2	0.004	0.50	0.0	0.04	16.52	0.00	2.123	10.43	0.54	3.3	96.7	0.0	1.97	0.72	0.56	0.83	3.78	11087	654	6	0	4	127	5668	logfile
✔	7TDT	25838	2024-02-16	2022-01-03	4.0	4.13	—	4.0	0.002	0.57	0.0	0.04	13.40	0.00	1.908	10.09	0.00	8.2	91.7	0.1	-0.53	0.63	0.69	—	4.0	0.003	0.79	0.0	0.04	15.88	0.00	2.135	15.05	2.31	9.0	91.0	0.0	-0.94	1.33	0.64	0.72	—	14444	1818	1	0	0	0	0	logfile
✔	7Wi8	32527	2024-02-14	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.315	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.003	0.71	0.0	0.04	12.39	0.00	2.161	11.53	0.00	12.3	87.7	0.0	-3.27	1.11	0.69	0.79	—	9268	1446	4	0	4	0	0	logfile
✔	7WiJ	32531	2024-02-15	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.51	0.0	0.03	15.61	0.00	2.261	4.52	1.58	0.8	99.2	0.0	3.39	0.25	0.71	0.88	1.65	12396	1602	6	0	0	0	0	logfile
✔	7TDo	25837	2024-02-17	2022-01-02	3.15	4.00	—	3.7	0.004	0.57	0.0	0.04	14.51	0.00	2.284	4.72	0.00	4.1	95.9	0.0	-1.16	0.73	0.68	1.65	3.7	0.002	0.59	0.0	0.04	14.69	0.00	2.230	4.92	0.59	3.9	96.1	0.0	1.21	0.61	0.86	0.85	1.79	19572	2520	12	0	6	0	0	logfile
✔	7Wi4	32521	2024-02-17	2022-01-02	3.4	2.58	—	2.1	0.012	1.09	0.0	0.06	18.32	0.01	1.813	16.25	18.40	8.3	91.5	0.2	-2.33	0.77	0.76	1.51	2.2	0.003	0.67	0.0	0.04	17.58	0.00	1.922	10.88	6.28	5.3	94.7	0.0	-0.21	1.52	0.76	0.76	1.27	19284	2460	12	0	18	0	0	logfile
✔	7Wi3	32520	2024-02-17	2022-01-02	4.0	3.02	—	2.9	0.010	1.15	37.0	0.07	13.94	0.01	1.363	17.43	1.47	8.1	91.9	0.0	-1.49	0.76	0.75	—	3.0	0.008	0.88	1.0	0.05	17.09	0.01	1.955	19.30	5.31	7.6	92.4	0.0	-0.18	0.64	0.76	0.75	—	69304	8688	48	0	0	0	0	logfile
✔	7WHZ	32516	2024-02-13	2022-01-01	3.42	3.64	—	3.7	0.007	0.94	0.0	0.06	14.21	0.01	2.276	5.93	0.40	8.4	91.6	0.0	-4.20	0.67	0.81	2.33	3.7	0.006	0.67	0.0	0.05	16.12	0.00	2.150	11.10	4.31	8.2	91.8	0.0	-2.22	0.53	0.67	0.84	2.56	6810	887	8	0	1	0	0	logfile
✔	7Wi0	32517	2024-02-13	2022-01-01	3.82	4.11	—	4.1	0.008	1.05	0.0	0.06	14.37	0.01	2.265	6.66	0.40	8.6	91.3	0.1	-4.32	0.72	0.81	2.23	4.1	0.004	0.78	0.0	0.04	16.24	0.00	2.111	12.72	3.63	8.7	91.3	0.0	-2.34	1.83	0.72	0.82	2.21	6823	886	8	0	1	0	0	logfile
✔	7TDE	25826	2024-02-17	2021-12-31	3.2	2.37	3.26	2.2	0.006	0.68	0.0	0.04	12.53	0.01	2.312	1.69	0.52	1.8	98.2	0.0	0.04	0.68	0.74	3.07	2.3	0.003	0.51	0.0	0.03	15.31	0.00	1.998	4.85	1.04	2.1	97.9	0.0	2.80	1.85	0.69	0.75	2.76	17734	1075	2	0	0	0	8888	logfile
✔	7TDH	25829	2024-02-15	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.85	0.00	2.254	4.64	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.029	2.61	35.0	0.10	20.94	0.02	0.912	155.22	26.89	44.2	54.2	1.6	-7.24	2.46	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	7WHW	32513	2024-02-15	2021-12-31	3.1	2.64	—	3.0	0.009	1.17	0.0	0.07	12.72	0.01	2.107	7.84	0.54	8.4	91.6	0.1	-5.16	0.62	0.76	3.64	3.0	0.003	0.66	0.0	0.04	14.70	0.00	1.970	13.50	2.63	6.9	93.1	0.0	-1.67	0.64	0.63	0.80	3.04	11978	1488	4	0	5	0	0	logfile
✔	7WHV	32512	2024-02-15	2021-12-31	2.8	2.22	—	2.7	0.016	1.29	0.0	0.08	12.09	0.01	2.100	7.72	0.60	7.0	92.9	0.1	-3.98	0.65	0.78	4.48	2.7	0.005	0.70	0.0	0.05	15.13	0.00	2.024	13.20	3.17	5.6	94.4	0.0	-0.76	1.24	0.66	0.80	3.51	12331	1520	4	0	7	0	0	logfile
✔	7TDK	25832	2024-02-15	2021-12-31	3.8	4.07	3.85	3.8	0.004	0.87	0.0	0.04	15.98	0.01	2.210	4.97	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.18	58.0	0.14	21.32	0.02	1.676	100.32	26.90	37.5	59.9	2.6	-7.40	2.34	0.89	0.86	1.08	117136	12936	8	0	3616	0	0	logfile
✔	7TDG	25828	2024-02-15	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	14.10	0.00	0.831	7.84	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.055	3.16	100.0	0.15	21.10	0.02	1.708	89.92	26.83	38.4	59.3	2.3	-7.38	1.61	0.86	0.86	1.08	117345	12936	8	0	3624	0	0	logfile
✔	7WHM	32504	2024-02-14	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.30	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.8	0.003	0.53	0.0	0.04	16.04	0.00	2.243	5.62	2.23	2.4	97.6	0.0	1.34	1.11	0.41	0.85	3.80	9650	1214	1	0	0	0	0	logfile
✔	7WHR	32509	2024-02-17	2021-12-31	3.4	4.06	—	4.0	0.003	0.60	0.0	0.05	13.11	0.00	2.190	10.13	0.00	7.4	92.6	0.0	-2.33	0.66	0.74	2.21	4.0	0.003	0.63	0.0	0.05	14.84	0.00	2.197	9.95	1.64	6.6	93.3	0.1	-2.43	0.34	0.63	0.70	1.91	16914	2184	6	0	0	0	0	logfile
✔	7WHT	32511	2024-02-17	2021-12-31	3.5	3.75	—	3.7	0.006	0.90	2.0	0.06	18.72	0.01	1.473	13.07	1.38	9.5	90.5	0.0	-1.32	0.67	0.75	2.76	3.7	0.003	0.62	0.0	0.05	15.50	0.01	1.950	11.25	2.10	9.7	90.3	0.0	-1.40	1.16	0.78	0.81	2.23	16980	2160	12	0	12	0	0	logfile
✔	7TDJ	25831	2024-02-15	2021-12-31	3.7	3.93	3.79	3.8	0.005	0.91	0.0	0.04	15.78	0.01	2.223	5.62	0.37	6.0	93.9	0.2	-0.38	0.85	0.77	1.01	3.7	0.056	3.32	145.0	0.16	21.49	0.02	1.738	95.34	28.84	37.0	60.2	2.8	-7.31	1.34	0.89	0.86	1.25	117112	12932	12	0	3616	8	0	logfile
✔	7WHP	32507	2024-02-17	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	15.13	0.01	2.209	8.40	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.003	0.54	0.0	0.04	16.53	0.00	2.068	8.54	2.76	2.6	97.3	0.0	-0.46	1.53	0.30	0.77	2.41	17038	2114	4	0	6	0	0	logfile

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