Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TEJ	25847	2024-02-21	2022-01-05	2.74	2.95	—	3.0	0.004	0.58	0.0	0.04	12.22	0.00	1.920	4.81	0.00	1.4	98.6	0.0	1.11	0.71	0.78	3.62	3.0	0.003	0.51	0.0	0.04	14.97	0.00	1.999	4.67	1.03	1.5	98.5	0.0	1.57	0.59	0.73	0.82	2.98	91490	5863	28	0	0	0	45742	logfile
✔	7TET	25852	2024-02-20	2022-01-05	4.45	6.94	4.54	4.4	0.005	1.03	0.0	0.06	14.45	0.01	2.224	9.44	0.78	10.6	88.9	0.5	-4.42	0.84	0.83	—	4.3	0.003	0.71	0.0	0.04	13.47	0.00	2.122	21.02	0.00	10.5	89.3	0.2	-1.94	0.61	0.83	0.85	—	28088	3563	8	0	0	0	0	logfile
✔	7WiZ	32541	2024-02-22	2022-01-05	3.2	3.39	3.17	3.3	0.013	0.81	0.0	0.05	17.36	0.00	2.045	5.24	1.85	8.2	91.7	0.2	-3.90	0.74	0.81	2.71	3.3	0.003	0.55	0.0	0.04	17.07	0.00	2.069	5.61	2.77	4.9	94.9	0.2	-0.66	1.26	0.70	0.81	2.60	35568	2228	8	0	8	0	17752	logfile
✔	7WiU	32536	2024-02-14	2022-01-05	3.48	3.87	—	3.7	0.004	0.94	5.0	0.05	14.54	0.00	2.070	12.01	2.16	11.7	87.4	0.9	-3.47	0.68	0.86	2.13	3.7	0.003	0.75	0.0	0.04	15.72	0.00	2.224	8.52	2.84	9.4	90.3	0.3	-0.16	0.97	0.69	0.86	1.65	8615	1147	2	0	0	0	0	logfile
✔	7TEo	25848	2024-02-22	2022-01-05	2.97	3.22	—	3.2	0.003	0.55	0.0	0.04	12.70	0.00	1.883	4.54	0.00	1.6	98.4	0.0	0.93	0.71	0.79	3.19	3.2	0.005	0.57	0.0	0.04	15.23	0.00	1.936	6.61	1.44	2.7	97.3	0.0	0.82	1.18	0.68	0.79	2.98	97522	6288	30	0	0	0	48612	logfile
✔	7WiW	32538	2024-02-14	2022-01-05	3.12	3.47	—	3.4	0.006	0.99	1.0	0.05	14.75	0.01	1.891	8.72	1.03	7.1	92.3	0.6	-4.54	0.72	0.89	3.28	3.4	0.003	0.64	0.0	0.04	15.78	0.00	1.961	6.59	2.17	6.0	93.7	0.3	-0.98	0.41	0.68	0.89	2.43	8603	1137	4	0	5	0	0	logfile
✔	7WiX	32539	2024-02-14	2022-01-05	3.53	3.90	—	3.7	0.005	0.93	1.0	0.04	14.86	0.01	2.063	10.48	0.57	10.1	89.5	0.3	-2.81	0.70	0.87	1.91	3.7	0.003	0.72	0.0	0.04	16.02	0.01	2.090	7.74	3.64	8.8	90.9	0.3	-0.20	0.54	0.68	0.86	1.50	8670	1147	4	0	3	0	0	logfile
✔	7WJ5	32543	2024-02-14	2022-01-05	3.72	3.15	—	3.2	0.004	0.55	0.0	0.04	10.79	0.00	2.173	7.85	3.05	4.1	95.9	0.0	1.05	0.62	0.80	2.62	3.2	0.005	0.63	0.0	0.04	14.18	0.00	2.057	10.12	3.81	4.2	95.8	0.0	0.82	0.35	0.63	0.80	2.10	8660	1129	6	0	0	0	0	logfile
✔	7TEi	25846	2024-02-19	2022-01-05	3.4	3.66	3.40	3.5	0.006	0.79	0.0	0.06	17.70	0.01	2.268	2.65	0.00	3.5	96.5	0.0	-0.99	0.84	0.84	2.83	3.5	0.005	0.61	0.0	0.05	13.54	0.00	2.124	4.90	0.67	3.7	96.3	0.0	0.34	1.12	0.86	0.88	2.55	25420	3044	39	0	116	0	0	logfile
✔	7WiV	32537	2024-02-14	2022-01-05	2.88	3.16	—	3.0	0.008	1.02	4.0	0.06	14.50	0.01	2.209	8.44	0.68	9.4	90.2	0.4	-5.21	0.69	0.88	3.24	3.0	0.003	0.69	0.0	0.04	15.03	0.00	2.221	6.62	1.70	7.5	92.4	0.1	-0.63	0.95	0.67	0.88	2.40	8646	1147	3	0	1	0	0	logfile
✔	7QPG	14120	2024-02-13	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.002	0.65	0.0	0.04	12.90	0.00	2.133	10.06	0.97	2.7	97.3	0.0	1.29	0.79	0.88	0.75	0.32	57164	7156	6	0	0	0	0	logfile
✔	7TEB	25844	2024-02-20	2022-01-04	4.23	5.48	4.24	3.5	0.006	1.41	6.0	0.07	16.52	0.01	1.373	15.69	3.86	11.7	86.6	1.7	-4.64	0.78	0.68	—	3.3	0.004	0.81	0.0	0.04	13.86	0.00	2.162	21.19	0.00	12.1	87.7	0.1	-1.48	1.56	0.83	0.81	—	28161	3580	8	0	0	0	0	logfile
✔	7TE9	25843	2024-02-20	2022-01-04	3.92	4.91	3.93	3.8	0.006	1.06	0.0	0.06	15.48	0.01	0.928	8.68	1.21	9.8	89.6	0.6	-4.42	0.81	0.75	0.65	3.8	0.003	0.80	0.0	0.04	15.90	0.00	2.094	16.05	1.86	10.4	89.3	0.3	-1.65	0.67	0.84	0.83	0.58	28142	3601	8	0	0	0	0	logfile
✔	7WiT	32535	2024-02-13	2022-01-04	3.21	3.87	3.47	3.8	0.005	0.57	0.0	0.04	11.49	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.003	0.53	0.0	0.04	13.75	0.00	2.168	5.29	3.79	2.4	97.6	0.0	1.70	0.59	0.63	0.80	1.31	8109	1133	1	0	2	0	0	logfile
✔	7Wi6	32526	2024-02-14	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	15.69	0.01	2.290	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.003	0.62	0.0	0.04	15.74	0.00	2.218	8.03	3.85	9.0	91.0	0.0	-4.10	0.42	0.76	0.78	1.90	9696	1446	4	0	4	0	0	logfile
✔	7WiH	32530	2024-02-14	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	14.90	0.01	2.318	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.69	0.0	0.04	14.60	0.00	2.140	8.37	4.27	10.8	89.1	0.1	-3.33	0.46	0.75	0.76	1.78	10002	1482	4	0	4	0	0	logfile
✔	7QP9	14115	2024-02-15	2022-01-03	2.89	3.12	2.88	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.249	6.44	0.00	3.6	96.4	0.0	2.00	0.58	0.81	3.64	3.2	0.004	0.50	0.0	0.04	16.52	0.00	2.123	10.43	0.54	3.3	96.7	0.0	1.97	0.72	0.56	0.83	3.78	11087	654	6	0	4	127	5668	logfile
✔	7QP7	14114	2024-02-13	2022-01-03	3.7	3.92	3.65	3.7	0.013	1.52	79.0	0.11	22.57	0.02	1.782	11.26	9.36	4.0	95.7	0.3	-0.22	0.76	0.75	1.33	3.7	0.005	0.77	0.0	0.04	22.03	0.01	2.026	15.56	4.76	5.8	94.1	0.0	-0.49	0.81	0.79	0.81	1.32	108194	9632	53	1815	2	0	0	logfile
✔	7TDT	25838	2024-02-16	2022-01-03	4.0	4.13	—	4.0	0.002	0.57	0.0	0.04	13.40	0.00	1.908	10.09	0.00	8.2	91.7	0.1	-0.53	0.63	0.69	—	4.0	0.003	0.79	0.0	0.04	15.88	0.00	2.135	15.05	2.31	9.0	91.0	0.0	-0.94	1.33	0.64	0.72	—	14444	1818	1	0	0	0	0	logfile
✔	7Wi8	32527	2024-02-14	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.315	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.003	0.71	0.0	0.04	12.39	0.00	2.161	11.53	0.00	12.3	87.7	0.0	-3.27	1.11	0.69	0.79	—	9268	1446	4	0	4	0	0	logfile

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