Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TF0	25857	2024-02-20	2022-01-06	3.02	3.77	—	3.2	0.005	0.81	0.0	0.06	13.05	0.01	2.269	3.14	0.10	1.4	98.5	0.0	0.64	0.81	0.82	2.21	3.2	0.003	0.59	0.0	0.04	14.54	0.00	2.126	9.03	0.86	2.2	97.8	0.0	0.79	0.71	0.81	0.83	2.15	26849	3303	26	0	62	0	0	logfile
✔	7TF4	25861	2024-02-15	2022-01-06	3.01	3.49	—	3.3	0.005	0.85	0.0	0.05	12.76	0.01	2.278	3.59	0.00	2.8	97.2	0.0	-1.60	0.63	0.82	3.29	3.3	0.003	0.53	0.0	0.04	13.84	0.00	2.163	7.10	1.52	2.9	97.1	0.0	-0.53	0.42	0.64	0.84	3.06	12792	1608	12	0	12	0	0	logfile
✔	7TFH	25872	2024-02-18	2022-01-06	3.09	2.46	—	3.2	0.003	0.56	0.0	0.04	16.18	0.00	2.066	7.61	0.04	2.9	97.1	0.0	0.09	0.82	0.79	2.41	3.2	0.003	0.55	0.0	0.04	17.66	0.00	1.966	9.53	1.92	3.2	96.8	0.0	0.42	1.69	0.84	0.84	2.16	22831	2717	17	63	9	0	0	logfile
✔	7TF5	25862	2024-02-25	2022-01-06	3.16	3.97	—	3.4	0.004	0.75	0.0	0.05	13.18	0.01	2.262	3.03	0.37	2.1	97.9	0.0	-0.17	0.86	0.83	2.19	3.5	0.004	0.58	0.0	0.04	13.75	0.00	2.073	8.55	0.98	2.6	97.4	0.0	0.65	0.59	0.87	0.86	2.11	50298	6228	48	0	120	0	0	logfile
✔	7TF8	25865	2024-02-19	2022-01-06	3.36	3.60	3.29	3.4	0.005	0.78	0.0	0.06	14.72	0.01	2.280	2.75	0.07	3.4	96.6	0.0	-0.90	0.85	0.85	2.93	3.4	0.003	0.51	0.0	0.04	12.76	0.00	2.142	5.92	0.69	3.0	97.0	0.0	0.25	1.12	0.86	0.87	2.68	25732	3153	22	0	78	0	0	logfile
✔	7TF2	25859	2024-02-25	2022-01-06	3.62	4.27	—	3.8	0.004	0.74	0.0	0.05	13.05	0.01	2.277	3.32	0.35	2.1	97.9	0.0	-0.12	0.86	0.82	1.53	3.8	0.004	0.71	0.0	0.04	13.94	0.00	1.925	12.82	1.42	3.1	96.9	0.0	0.39	0.65	0.86	0.85	1.60	50292	6228	48	0	120	0	0	logfile
✔	7TF3	25860	2024-02-18	2022-01-06	2.25	2.94	—	2.8	0.005	0.82	0.0	0.06	12.94	0.01	2.287	3.03	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.005	0.61	0.0	0.05	14.21	0.00	2.145	6.48	1.22	2.3	97.7	0.0	0.71	1.85	0.79	0.85	3.59	21873	2703	24	0	56	0	0	logfile
✔	7TEW	25853	2024-02-13	2022-01-06	3.52	4.17	—	3.8	0.005	0.85	0.0	0.06	13.34	0.01	2.344	2.89	0.14	1.4	98.6	0.0	0.00	0.82	0.82	2.55	3.8	0.003	0.59	0.0	0.04	15.44	0.00	2.210	9.68	1.29	2.3	97.7	0.0	1.74	1.58	0.83	0.84	1.98	6555	797	4	0	7	0	0	logfile
✔	7TFK	25875	2024-02-16	2022-01-06	3.25	3.36	—	3.3	0.003	0.65	0.0	0.04	16.01	0.01	2.092	10.12	0.13	3.2	96.8	0.0	0.18	0.69	0.63	1.06	3.3	0.003	0.61	0.0	0.04	17.40	0.00	1.866	14.47	2.42	3.8	96.2	0.0	0.34	0.43	0.71	0.68	1.18	14363	1680	14	45	9	0	0	logfile
✔	7TFC	25869	2024-02-25	2022-01-06	1.96	2.13	—	2.1	0.002	0.53	0.0	0.04	17.59	0.00	1.913	6.13	1.74	4.1	95.9	0.0	0.82	0.43	0.60	5.65	2.1	0.003	0.67	4.0	0.04	17.30	0.00	1.719	17.16	1.39	4.2	95.8	0.0	1.22	0.98	0.72	0.83	6.08	50456	6356	42	0	28	0	140	logfile
✔	7TFJ	25874	2024-02-18	2022-01-06	3.3	3.54	—	3.5	0.003	0.62	0.0	0.04	15.19	0.00	2.088	7.61	0.09	2.8	97.2	0.0	0.19	0.76	0.81	2.14	3.5	0.003	0.57	0.0	0.04	16.87	0.00	2.011	10.65	2.13	3.5	96.5	0.0	0.61	0.92	0.76	0.83	1.73	20607	2486	15	42	9	0	0	logfile
✔	7TFL	25876	2024-02-16	2022-01-06	3.33	3.61	—	3.5	0.003	0.62	0.0	0.04	15.10	0.00	2.089	9.78	0.14	3.5	96.5	0.0	0.58	0.70	0.59	0.62	3.5	0.003	0.69	0.0	0.04	17.02	0.00	1.893	17.85	2.74	4.0	96.0	0.0	0.40	1.73	0.73	0.66	1.09	13690	1653	12	24	9	0	0	logfile
✔	7TF7	25864	2024-02-23	2022-01-06	2.13	2.24	—	2.2	0.004	0.61	0.0	0.04	15.42	0.00	2.187	5.57	1.43	2.5	97.4	0.1	1.01	0.47	0.70	5.40	2.3	0.003	0.54	0.0	0.04	16.33	0.00	2.215	4.25	2.42	3.7	96.3	0.0	1.23	0.40	0.71	0.87	5.87	39976	4980	12	0	0	0	0	logfile
✔	7TFE	25871	2024-02-24	2022-01-06	2.85	3.19	—	3.2	0.004	0.68	0.0	0.05	14.58	0.00	2.083	8.48	2.18	4.8	95.2	0.0	0.27	0.50	0.67	3.07	3.2	0.005	0.92	7.0	0.05	16.34	0.00	2.044	10.10	2.27	4.3	95.7	0.0	0.43	1.03	0.71	0.83	3.41	41388	5316	24	0	24	0	0	logfile
✔	7WJi	32544	2024-02-24	2022-01-06	4.5	4.96	4.57	4.5	0.006	1.21	1.0	0.07	14.87	0.01	2.258	7.55	0.28	6.1	93.9	0.0	-4.07	0.68	0.55	—	4.4	0.003	0.71	0.0	0.04	14.24	0.00	2.121	16.91	0.02	5.2	94.8	0.0	-0.51	0.84	0.70	0.63	—	41173	5128	5	0	0	0	0	logfile
✔	7TF6	25863	2024-02-24	2022-01-06	2.15	2.26	—	2.3	0.002	0.51	0.0	0.04	16.47	0.00	2.048	4.68	1.34	3.7	96.3	0.0	0.26	0.48	0.71	5.34	2.3	0.002	0.48	0.0	0.04	17.09	0.00	1.896	13.30	1.34	4.4	95.6	0.0	0.72	0.34	0.71	0.87	5.50	43272	5400	36	0	24	0	120	logfile
✔	7TFA	25867	2024-02-24	2022-01-06	2.07	2.20	—	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.014	5.94	2.16	3.6	96.4	0.0	0.31	0.47	0.65	4.55	2.2	0.002	0.49	0.0	0.04	16.89	0.00	1.897	19.57	3.03	3.8	96.2	0.0	0.80	0.39	0.70	0.82	5.14	42636	5424	36	0	24	0	120	logfile
✔	7TFD	25870	2024-02-24	2022-01-06	3.16	3.43	—	3.5	0.004	0.71	0.0	0.04	13.90	0.00	2.024	14.29	0.56	5.0	95.0	0.0	-0.05	0.57	0.64	2.52	3.4	0.003	0.62	0.0	0.04	16.03	0.00	2.009	12.88	1.75	5.2	94.8	0.0	-0.28	1.02	0.67	0.71	1.91	41408	5292	24	0	24	0	0	logfile
✔	7TFB	25868	2024-02-25	2022-01-06	2.28	2.41	—	2.5	0.005	0.60	0.0	0.05	16.67	0.00	1.926	6.95	2.11	5.1	94.9	0.1	-0.03	0.48	0.67	4.05	2.5	0.002	0.51	0.0	0.04	16.81	0.00	1.912	16.87	3.92	5.4	94.6	0.0	0.66	0.98	0.72	0.86	4.37	49630	6328	42	0	28	0	140	logfile
✔	7QQ3	14121	2024-02-20	2022-01-06	2.1	1.65	2.18	1.9	0.008	0.76	5.0	0.05	23.41	0.02	1.832	2.70	4.22	3.6	96.0	0.4	-0.31	0.50	0.61	3.73	1.9	0.003	0.78	4.0	0.04	23.08	0.01	1.817	6.83	1.96	3.7	96.1	0.2	-0.48	1.22	0.64	0.69	3.89	87594	2903	35	3016	154	28	0	logfile

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