Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WK8	32562	2024-02-13	2022-01-08	3.61	2.50	—	2.3	0.004	0.74	0.0	0.05	8.51	0.01	2.262	5.72	0.22	3.9	95.9	0.2	-1.34	0.77	0.76	3.80	2.3	0.004	0.63	0.0	0.04	13.02	0.00	2.082	8.01	1.55	3.0	96.9	0.2	0.28	1.24	0.80	0.79	4.16	3982	516	4	0	0	0	0	logfile
✔	7WJZ	32553	2024-02-17	2022-01-08	3.34	2.55	—	2.1	0.003	0.57	5.0	0.05	9.68	0.01	2.238	8.05	5.50	8.7	91.3	0.0	-4.86	0.72	0.69	2.17	2.2	0.003	0.73	0.0	0.05	14.03	0.00	2.081	13.15	4.79	10.6	89.3	0.1	-2.08	1.31	0.75	0.74	2.01	69158	8886	24	0	49	0	0	logfile
✔	7WK7	32561	2024-02-14	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.0	0.004	0.74	0.0	0.04	14.90	0.00	2.193	15.64	4.63	7.0	92.9	0.2	-0.97	0.73	0.80	0.80	2.20	10206	1330	4	0	2	0	0	logfile
✔	7WK3	32557	2024-02-19	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.79	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.006	1.06	4.0	0.05	14.36	0.00	1.772	12.28	2.74	3.2	96.8	0.0	-0.24	1.12	0.79	0.79	1.86	24805	3162	3	0	0	0	0	logfile
✔	7WKA	32564	2024-02-21	2022-01-08	3.64	3.27	—	3.6	0.005	0.79	1.0	0.05	8.14	0.01	2.353	3.18	0.23	3.7	96.1	0.1	-2.58	0.70	0.64	0.56	3.8	0.004	0.74	0.0	0.05	13.87	0.00	2.110	14.92	2.65	3.5	96.5	0.1	-0.40	1.59	0.77	0.73	1.37	31353	4017	7	0	0	0	0	logfile
✔	7TFS	25879	2024-02-15	2022-01-07	4.3	4.40	—	4.4	0.004	0.96	0.0	0.04	16.80	0.01	2.001	35.40	0.00	6.0	94.0	0.0	-2.06	0.63	0.70	—	4.4	0.005	0.97	0.0	0.04	15.91	0.01	2.131	14.90	0.00	8.0	92.0	0.0	-1.88	0.55	0.64	0.73	—	11382	1414	7	0	28	0	0	logfile
✔	7TGG	25881	2024-02-17	2022-01-07	4.1	4.67	—	4.4	0.004	0.71	0.0	0.05	11.74	0.01	2.070	15.91	0.00	7.4	92.6	0.0	-2.21	0.66	0.82	—	4.4	0.003	0.70	0.0	0.04	11.93	0.00	2.250	7.75	0.00	10.1	89.9	0.0	-0.54	0.69	0.68	0.87	—	18255	2445	30	0	0	0	0	logfile
✔	7WJU	32548	2024-02-14	2022-01-07	2.69	2.82	—	2.8	0.007	0.99	0.0	0.07	21.91	0.01	2.325	3.53	0.00	5.3	94.5	0.2	-2.47	0.72	0.81	3.88	2.9	0.003	0.55	0.0	0.04	22.24	0.00	2.238	6.65	1.13	4.5	95.5	0.0	0.82	1.16	0.70	0.83	3.29	8322	607	5	158	0	0	0	logfile
✔	7WJo	32547	2024-02-15	2022-01-07	3.2	3.40	—	3.3	0.006	0.55	0.0	0.04	11.70	0.00	2.203	4.21	0.29	4.4	95.6	0.0	1.94	0.67	0.82	2.26	3.4	0.003	0.52	0.0	0.04	14.62	0.00	2.233	5.70	2.69	5.1	94.9	0.0	1.49	0.51	0.67	0.85	1.70	12932	1602	4	0	2	0	0	logfile
✔	7WJM	32545	2024-02-15	2022-01-07	3.3	3.53	—	3.5	0.003	0.48	0.0	0.04	10.78	0.00	2.265	3.14	0.29	5.0	95.0	0.0	1.87	0.70	0.85	2.41	3.5	0.003	0.53	0.0	0.04	14.21	0.00	2.269	4.27	2.95	4.2	95.7	0.1	2.19	3.22	0.71	0.87	1.98	12970	1614	2	0	0	0	0	logfile
✔	7WJN	32546	2024-02-15	2022-01-07	3.3	3.46	—	3.4	0.004	0.59	0.0	0.04	10.44	0.00	2.235	2.90	0.58	4.1	95.9	0.0	2.06	0.67	0.82	2.37	3.4	0.004	0.57	0.0	0.04	13.96	0.00	2.218	4.94	2.52	5.6	94.4	0.0	1.94	0.47	0.69	0.85	1.95	13054	1616	4	0	4	0	0	logfile
✔	7TGE	25880	2024-02-18	2022-01-07	3.68	4.05	3.74	3.7	0.004	0.76	0.0	0.06	13.34	0.01	2.270	3.50	0.09	3.8	96.2	0.0	-1.30	0.80	0.72	0.89	3.7	0.005	0.64	0.0	0.04	14.26	0.00	2.004	11.17	0.94	5.0	95.0	0.0	-0.46	1.15	0.81	0.75	0.74	21461	2677	15	0	40	0	0	logfile
✔	7TF8	25865	2024-02-19	2022-01-06	3.36	3.60	3.29	3.4	0.005	0.78	0.0	0.06	14.72	0.01	2.280	2.75	0.07	3.4	96.6	0.0	-0.90	0.85	0.85	2.93	3.4	0.003	0.51	0.0	0.04	12.76	0.00	2.142	5.92	0.69	3.0	97.0	0.0	0.25	1.12	0.86	0.87	2.68	25732	3153	22	0	78	0	0	logfile
✔	7QQ3	14121	2024-02-20	2022-01-06	2.1	1.65	2.18	1.9	0.008	0.76	5.0	0.05	23.41	0.02	1.832	2.70	4.22	3.6	96.0	0.4	-0.31	0.50	0.61	3.73	1.9	0.003	0.78	4.0	0.04	23.08	0.01	1.817	6.83	1.96	3.7	96.1	0.2	-0.48	1.22	0.64	0.69	3.89	87594	2903	35	3016	154	28	0	logfile
✔	7TFC	25869	2024-02-25	2022-01-06	1.96	2.13	—	2.1	0.002	0.53	0.0	0.04	17.59	0.00	1.913	6.13	1.74	4.1	95.9	0.0	0.82	0.43	0.60	5.65	2.1	0.003	0.67	4.0	0.04	17.30	0.00	1.719	17.16	1.39	4.2	95.8	0.0	1.22	0.98	0.72	0.83	6.08	50456	6356	42	0	28	0	140	logfile
✔	7TEW	25853	2024-02-13	2022-01-06	3.52	4.17	—	3.8	0.005	0.85	0.0	0.06	13.34	0.01	2.344	2.89	0.14	1.4	98.6	0.0	0.00	0.82	0.82	2.55	3.8	0.003	0.59	0.0	0.04	15.44	0.00	2.210	9.68	1.29	2.3	97.7	0.0	1.74	1.58	0.83	0.84	1.98	6555	797	4	0	7	0	0	logfile
✔	7TFL	25876	2024-02-16	2022-01-06	3.33	3.61	—	3.5	0.003	0.62	0.0	0.04	15.10	0.00	2.089	9.78	0.14	3.5	96.5	0.0	0.58	0.70	0.59	0.62	3.5	0.003	0.69	0.0	0.04	17.02	0.00	1.893	17.85	2.74	4.0	96.0	0.0	0.40	1.73	0.73	0.66	1.09	13690	1653	12	24	9	0	0	logfile
✔	7TFH	25872	2024-02-18	2022-01-06	3.09	2.46	—	3.2	0.003	0.56	0.0	0.04	16.18	0.00	2.066	7.61	0.04	2.9	97.1	0.0	0.09	0.82	0.79	2.41	3.2	0.003	0.55	0.0	0.04	17.66	0.00	1.966	9.53	1.92	3.2	96.8	0.0	0.42	1.69	0.84	0.84	2.16	22831	2717	17	63	9	0	0	logfile
✔	7TEX	25854	2024-02-20	2022-01-06	3.27	4.06	—	3.3	0.005	0.80	0.0	0.06	13.17	0.01	2.280	2.91	0.17	1.4	98.6	0.0	0.73	0.84	0.83	2.15	3.3	0.003	0.58	0.0	0.04	14.12	0.00	2.121	10.01	1.00	2.5	97.5	0.0	0.88	0.64	0.85	0.86	2.17	26839	3303	26	0	62	0	0	logfile
✔	7TFE	25871	2024-02-24	2022-01-06	2.85	3.19	—	3.2	0.004	0.68	0.0	0.05	14.58	0.00	2.083	8.48	2.18	4.8	95.2	0.0	0.27	0.50	0.67	3.07	3.2	0.005	0.92	7.0	0.05	16.34	0.00	2.044	10.10	2.27	4.3	95.7	0.0	0.43	1.03	0.71	0.83	3.41	41388	5316	24	0	24	0	0	logfile

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