Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WKS	32568	2024-02-13	2022-01-11	3.0	2.57	—	3.0	0.002	0.54	0.0	0.04	13.07	0.00	2.162	7.24	0.00	1.1	98.9	0.0	1.77	0.60	0.81	2.12	3.0	0.003	0.58	0.0	0.04	15.95	0.00	2.199	8.57	1.10	1.1	98.9	0.0	1.68	0.93	0.61	0.84	1.56	5874	754	2	0	0	0	0	logfile
✔	7WKW	32570	2024-02-15	2022-01-11	2.62	2.71	—	2.8	0.004	0.57	0.0	0.04	13.10	0.00	1.991	5.89	0.00	1.9	98.1	0.0	1.70	0.47	0.63	1.09	2.7	0.003	0.55	0.0	0.04	15.49	0.00	1.930	4.64	1.57	1.6	98.4	0.0	1.83	0.60	0.61	0.82	2.29	12056	754	4	0	2	0	6138	logfile
✔	7QRM	14123	2024-02-17	2022-01-11	2.7	2.81	—	2.9	0.009	0.91	0.0	0.05	20.05	0.01	2.033	14.02	1.88	4.6	95.4	0.0	-0.52	0.71	0.88	3.72	2.9	0.003	0.66	0.0	0.04	17.32	0.01	2.172	3.89	1.94	3.4	96.6	0.0	0.92	0.92	0.70	0.89	3.13	16336	1902	27	0	37	0	0	logfile
✔	7THK	25896	2024-02-18	2022-01-11	3.11	3.36	3.15	3.4	0.009	1.34	13.0	0.08	13.34	0.01	2.312	1.77	0.44	4.4	95.6	0.0	-1.63	0.71	0.78	2.87	3.4	0.003	0.58	0.0	0.04	14.69	0.00	2.152	7.42	2.12	3.0	97.0	0.0	0.38	1.01	0.70	0.86	3.08	23191	2925	6	0	38	0	0	logfile
✔	7THM	25898	2024-02-17	2022-01-11	3.18	3.44	—	3.4	0.002	0.45	0.0	0.04	13.35	0.00	1.713	3.23	0.00	5.9	94.1	0.0	-0.75	0.68	0.73	2.05	3.4	0.003	0.50	0.0	0.04	14.76	0.00	1.956	5.58	0.99	7.1	92.9	0.0	-1.22	0.42	0.68	0.75	2.08	18260	1150	6	0	4	0	9045	logfile
✔	7WKK	32566	2024-02-21	2022-01-10	4.2	4.30	—	3.9	0.006	0.63	0.0	0.04	4.94	0.00	2.138	2.83	0.00	4.7	95.2	0.1	-2.36	0.46	0.60	—	3.8	0.005	0.74	0.0	0.04	5.51	0.00	2.124	3.84	0.00	9.6	90.4	0.0	-0.97	0.64	0.52	0.69	—	92821	18728	30	0	0	0	0	logfile
✔	7THE	25893	2024-02-13	2022-01-10	3.87	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.76	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.003	0.70	0.0	0.04	16.19	0.00	2.165	15.28	6.09	6.7	93.3	0.0	-1.22	0.69	0.68	0.76	2.74	3305	423	4	0	1	0	0	logfile
✔	7TGW	25887	2024-02-20	2022-01-09	3.0	3.69	—	3.4	0.007	0.86	0.0	0.10	15.75	0.01	1.983	10.37	0.24	7.3	92.6	0.0	-2.46	0.86	0.88	3.64	3.4	0.004	0.71	0.0	0.05	14.16	0.00	2.112	6.25	0.65	6.2	93.8	0.0	-0.98	1.03	0.86	0.90	3.05	26617	3307	18	0	45	0	0	logfile
✔	7TGY	25889	2024-02-19	2022-01-09	3.0	3.76	—	3.5	0.010	0.87	0.0	0.06	14.87	0.01	1.886	9.61	0.18	7.8	92.1	0.0	-2.50	0.86	0.87	3.21	3.5	0.003	0.63	0.0	0.05	13.87	0.00	2.205	5.26	0.78	4.2	95.8	0.0	-0.45	1.02	0.84	0.86	2.45	25999	3254	15	0	42	0	0	logfile
✔	7TGX	25888	2024-02-19	2022-01-09	3.2	3.90	—	3.6	0.005	0.68	0.0	0.05	15.45	0.00	1.948	7.60	0.25	6.6	93.4	0.0	-2.14	0.85	0.86	3.04	3.6	0.004	0.62	0.0	0.04	14.76	0.00	2.154	5.91	1.59	4.8	95.2	0.0	-0.70	0.42	0.85	0.88	2.51	25778	3244	10	0	32	0	0	logfile
✔	7WKD	32565	2024-02-17	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.1	0.017	0.75	0.0	0.04	14.60	0.00	1.907	12.66	2.92	2.6	97.4	0.0	0.72	1.01	0.72	0.74	2.49	17515	1120	6	0	0	0	8712	logfile
✔	7QQK	14122	2024-02-15	2022-01-09	3.8	4.08	3.83	4.0	0.004	0.81	0.0	0.05	13.77	0.01	2.117	25.98	0.00	5.2	94.5	0.2	-0.09	0.65	0.78	1.88	4.0	0.006	0.97	1.0	0.05	16.05	0.01	2.106	27.10	3.02	5.9	94.0	0.1	-0.39	0.46	0.65	0.79	1.58	13444	1732	8	12	0	0	0	logfile
✔	7WK6	32560	2024-02-13	2022-01-08	3.67	2.86	—	3.8	0.008	1.07	1.0	0.07	15.40	0.01	2.328	5.81	0.57	4.7	94.9	0.4	-5.05	0.77	0.77	2.23	3.7	0.004	0.80	0.0	0.05	17.89	0.00	2.145	14.33	3.74	3.6	96.4	0.0	-0.94	1.36	0.79	0.78	1.76	6428	791	2	0	0	0	0	logfile
✔	7WKA	32564	2024-02-21	2022-01-08	3.64	3.27	—	3.6	0.005	0.79	1.0	0.05	8.14	0.01	2.353	3.18	0.23	3.7	96.1	0.1	-2.58	0.70	0.64	0.56	3.8	0.004	0.74	0.0	0.05	13.87	0.00	2.110	14.92	2.65	3.5	96.5	0.1	-0.40	1.59	0.77	0.73	1.37	31353	4017	7	0	0	0	0	logfile
✔	7WK5	32559	2024-02-21	2022-01-08	3.66	3.93	—	3.7	0.005	0.84	1.0	0.05	13.40	0.01	1.646	3.40	0.27	3.9	96.0	0.1	-4.59	0.66	0.58	0.35	3.8	0.004	0.74	0.0	0.04	15.63	0.00	2.094	15.02	2.37	5.1	94.9	0.0	-1.55	1.03	0.69	0.65	0.46	29601	3750	4	0	0	0	0	logfile
✔	7WK4	32558	2024-02-21	2022-01-08	3.69	3.97	—	3.8	0.005	0.86	2.0	0.06	14.66	0.01	2.338	3.94	0.49	3.4	96.4	0.2	-4.28	0.68	0.60	0.56	3.8	0.003	0.70	0.0	0.04	16.35	0.00	2.073	14.38	3.11	3.6	96.4	0.0	-1.26	0.82	0.71	0.67	0.76	29541	3743	4	0	0	0	0	logfile
✔	7WK7	32561	2024-02-14	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.0	0.004	0.74	0.0	0.04	14.90	0.00	2.193	15.64	4.63	7.0	92.9	0.2	-0.97	0.73	0.80	0.80	2.20	10206	1330	4	0	2	0	0	logfile
✔	7WK1	32555	2024-02-14	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.60	0.0	0.04	13.46	0.00	2.059	11.84	3.30	6.2	93.7	0.1	0.12	0.79	0.70	0.84	1.40	10200	1330	4	0	2	0	0	logfile
✔	7WK0	32554	2024-02-14	2022-01-08	3.32	2.37	—	2.2	0.004	0.65	0.0	0.04	11.09	0.01	2.233	9.59	7.71	12.2	87.5	0.2	-4.96	0.75	0.75	3.28	2.2	0.006	0.77	0.0	0.05	14.20	0.00	2.162	12.32	5.92	14.6	85.3	0.1	-3.07	1.62	0.78	0.79	3.14	9724	1264	8	0	2	0	0	logfile
✔	7WK9	32563	2024-02-21	2022-01-08	3.48	3.16	—	3.7	0.005	0.79	0.0	0.05	8.28	0.01	2.342	3.09	0.36	3.9	95.9	0.2	-2.70	0.70	0.65	0.52	3.7	0.004	0.76	0.0	0.05	14.16	0.00	2.034	13.92	2.23	3.1	96.8	0.0	-0.86	1.19	0.78	0.77	1.07	29745	3805	7	0	0	0	0	logfile

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