Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SRS	25403	2024-02-15	2021-11-08	3.3	2.62	—	3.4	0.005	0.66	0.0	0.05	12.94	0.00	2.242	4.06	0.23	3.4	96.6	0.0	0.87	0.85	0.84	3.41	3.4	0.003	0.58	0.0	0.04	14.02	0.00	2.252	3.70	2.31	3.1	96.8	0.1	0.55	0.35	0.85	0.86	2.74	8361	1103	7	0	2	0	0	logfile
✔	7Q6E	13857	2024-02-22	2021-11-07	2.7	2.91	—	2.8	0.003	0.54	0.0	0.04	10.95	0.00	2.127	3.28	0.48	2.7	97.3	0.0	0.33	0.75	0.84	3.73	2.8	0.003	0.58	0.0	0.05	13.13	0.00	2.148	7.29	2.11	3.2	96.8	0.0	0.53	0.52	0.74	0.87	3.26	34341	4327	29	0	74	0	0	logfile
✔	7SQU	25395	2024-02-17	2021-11-06	2.6	3.28	2.56	3.0	0.010	0.70	0.0	0.05	15.78	0.01	2.259	1.30	1.04	2.5	97.5	0.0	1.39	0.79	0.86	3.71	3.0	0.003	0.57	0.0	0.04	16.15	0.01	2.230	4.89	1.67	1.6	98.4	0.0	1.35	0.66	0.79	0.87	2.87	17856	2292	12	0	0	0	0	logfile
✔	7SQR	25391	2024-02-17	2021-11-06	3.4	4.22	3.33	3.9	0.003	0.63	0.0	0.04	13.78	0.00	2.185	6.82	0.00	3.1	96.9	0.0	1.05	0.85	0.83	2.86	3.9	0.002	0.52	0.0	0.04	15.05	0.00	2.025	6.12	1.42	3.8	96.2	0.0	0.83	0.40	0.85	0.83	2.93	17272	2216	12	0	0	0	0	logfile
✔	7SQV	25396	2024-02-13	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.22	0.00	2.300	1.47	1.25	1.1	98.9	0.0	1.75	1.99	0.77	0.90	3.89	4471	573	5	0	0	7	0	logfile
✔	7VVo	32146	2024-02-13	2021-11-06	4.1	2.82	3.93	4.0	0.014	1.88	0.0	0.09	15.54	0.01	2.158	9.28	3.81	4.5	95.5	0.1	-1.84	0.70	0.74	—	3.9	0.003	0.64	0.0	0.04	13.90	0.00	2.108	12.73	0.00	3.8	96.2	0.0	0.24	0.64	0.69	0.69	—	7942	1059	6	0	0	0	0	logfile
✔	7VVN	32145	2024-02-13	2021-11-06	3.8	3.28	3.77	3.7	0.013	1.78	0.0	0.08	15.14	0.01	2.185	9.66	0.37	6.1	93.8	0.1	-2.22	0.66	0.73	1.76	3.4	0.004	0.68	0.0	0.04	16.27	0.00	2.088	11.12	4.00	4.1	95.9	0.0	-0.22	1.69	0.69	0.72	1.51	8130	1086	6	0	0	0	0	logfile
✔	7VVL	32143	2024-02-14	2021-11-06	2.8	2.24	2.76	2.9	0.014	1.69	0.0	0.09	17.70	0.00	2.204	4.33	7.24	4.3	95.7	0.1	-0.88	0.59	0.76	3.21	3.0	0.003	0.55	0.0	0.04	18.01	0.00	2.180	5.62	4.01	3.5	96.5	0.0	0.90	0.45	0.63	0.78	2.35	8725	1126	6	0	0	1	0	logfile
✔	7VVJ	32141	2024-02-14	2021-11-06	3.2	2.96	3.17	3.2	0.015	1.78	1.0	0.09	14.24	0.01	2.205	6.85	1.77	5.4	94.5	0.1	-1.52	0.60	0.76	3.90	3.2	0.003	0.56	0.0	0.04	15.89	0.00	2.151	7.60	2.65	2.8	97.2	0.0	1.02	0.50	0.71	0.82	2.63	8872	1154	6	0	0	0	0	logfile
✔	7VVM	32144	2024-02-14	2021-11-06	3.2	2.40	3.19	3.2	0.015	1.76	0.0	0.09	13.51	0.00	2.200	6.43	0.60	5.2	94.8	0.0	-1.17	0.60	0.71	2.55	3.2	0.003	0.54	0.0	0.04	16.06	0.00	2.116	8.61	2.98	3.3	96.7	0.0	0.71	0.55	0.65	0.72	2.25	8507	1133	6	0	0	0	0	logfile
✔	7VVK	32142	2024-02-14	2021-11-06	3.3	2.24	3.30	3.3	0.015	1.75	0.0	0.09	13.87	0.01	2.220	7.68	0.47	4.2	95.6	0.2	-0.92	0.62	0.71	2.44	3.3	0.002	0.56	0.0	0.04	16.58	0.00	2.160	9.37	2.23	2.9	97.1	0.0	0.60	1.26	0.66	0.72	1.49	8516	1121	6	0	0	0	0	logfile
✔	7SQS	25392	2024-02-13	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.003	0.53	0.0	0.04	14.93	0.00	2.265	4.05	1.51	3.8	96.2	0.0	1.03	0.33	0.77	0.86	2.80	4376	560	5	0	0	0	0	logfile
✔	7SQT	25394	2024-02-13	2021-11-06	4.0	7.13	4.01	3.5	0.010	0.70	0.0	0.05	15.78	0.01	0.902	2.31	1.25	2.5	97.5	0.0	1.39	0.94	0.84	—	3.4	0.003	0.76	0.0	0.04	15.77	0.00	2.133	10.60	0.60	1.6	98.4	0.0	1.64	3.02	0.93	0.86	—	107136	13752	24	0	0	0	0	logfile
✔	7SQQ	25390	2024-02-23	2021-11-06	4.2	7.22	4.25	3.9	0.003	0.63	0.0	0.04	13.76	0.00	1.134	8.38	0.00	3.1	96.9	0.0	1.04	0.93	0.83	—	3.9	0.003	0.57	0.0	0.04	13.50	0.00	2.206	10.84	0.00	3.5	96.5	0.0	1.22	0.82	0.92	0.86	—	103632	13296	24	0	0	0	0	logfile
✔	7Q62	13850	2024-02-16	2021-11-05	3.18	3.86	3.24	3.6	0.006	1.13	0.0	0.07	14.48	0.01	2.276	4.86	0.06	4.7	95.2	0.1	-1.75	0.80	0.78	2.10	3.6	0.003	0.65	0.0	0.04	15.40	0.00	2.108	10.99	1.90	4.8	95.2	0.0	-0.23	0.42	0.81	0.81	2.31	16186	2045	4	0	10	0	0	logfile
✔	7Q67	13854	2024-02-13	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.004	1.00	0.0	0.05	19.06	0.00	2.149	28.31	14.91	19.1	80.9	0.0	-5.06	2.51	0.45	0.70	0.92	2618	363	11	0	0	0	0	logfile
✔	7Q66	13853	2024-02-13	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.005	0.76	0.0	0.04	16.32	0.00	2.195	14.14	12.65	0.8	99.2	0.0	-4.12	0.64	0.62	0.88	4.35	4807	682	22	0	0	0	0	logfile
✔	7SQH	25385	2024-02-13	2021-11-05	2.5	2.77	—	3.0	0.006	0.74	0.0	0.05	19.41	0.00	2.257	3.85	0.00	2.4	97.6	0.0	1.93	0.85	0.83	3.23	2.9	0.004	0.67	0.0	0.05	17.07	0.01	2.157	5.73	2.90	3.4	96.6	0.0	2.04	0.61	0.87	0.87	3.38	6954	849	9	0	12	21	0	logfile
✔	7SQF	25383	2024-02-13	2021-11-05	3.1	2.70	—	3.2	0.005	0.60	0.0	0.05	13.84	0.00	2.409	5.35	0.00	3.0	97.0	0.0	1.39	0.81	0.75	2.77	3.1	0.005	0.60	0.0	0.05	16.57	0.00	2.008	9.94	3.39	3.7	96.3	0.0	0.97	1.06	0.82	0.81	2.74	6630	819	6	0	12	0	0	logfile
✔	7Q5Z	13847	2024-02-14	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.22	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.004	0.69	0.0	0.05	14.20	0.00	2.146	16.72	2.30	6.3	93.5	0.2	-0.81	1.18	0.81	0.73	1.45	10489	1344	1	0	0	0	0	logfile

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