Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q5Z	13847	2024-02-14	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.22	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.004	0.69	0.0	0.05	14.20	0.00	2.146	16.72	2.30	6.3	93.5	0.2	-0.81	1.18	0.81	0.73	1.45	10489	1344	1	0	0	0	0	logfile
✔	7Q60	13848	2024-02-14	2021-11-05	3.13	3.73	—	3.4	0.007	1.26	1.0	0.07	15.64	0.01	2.271	5.00	0.57	5.2	94.8	0.1	-2.64	0.77	0.74	1.79	3.4	0.004	0.68	0.0	0.04	16.02	0.00	2.106	12.29	4.47	5.7	94.2	0.1	-1.02	0.44	0.77	0.76	1.79	9450	1212	1	0	0	0	0	logfile
✔	7SQo	25389	2024-02-17	2021-11-05	3.17	3.84	—	3.7	0.004	0.59	0.0	0.04	13.25	0.01	2.198	10.21	0.00	4.2	95.8	0.0	-0.20	0.58	0.72	2.92	3.7	0.004	0.85	0.0	0.04	14.64	0.00	2.152	8.98	1.11	3.9	96.1	0.0	-0.16	2.13	0.61	0.76	2.53	16949	1111	6	0	5	0	8331	logfile
✔	7Q65	13852	2024-02-13	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.005	0.68	0.0	0.03	13.83	0.00	2.082	12.37	10.76	9.1	90.9	0.0	-5.14	0.65	0.57	0.84	4.36	6204	880	22	0	0	0	0	logfile
✔	7SQH	25385	2024-02-13	2021-11-05	2.5	2.77	—	3.0	0.006	0.74	0.0	0.05	19.41	0.00	2.257	3.85	0.00	2.4	97.6	0.0	1.93	0.85	0.83	3.23	2.9	0.004	0.67	0.0	0.05	17.07	0.01	2.157	5.73	2.90	3.4	96.6	0.0	2.04	0.61	0.87	0.87	3.38	6954	849	9	0	12	21	0	logfile
✔	7Q62	13850	2024-02-16	2021-11-05	3.18	3.86	3.24	3.6	0.006	1.13	0.0	0.07	14.48	0.01	2.276	4.86	0.06	4.7	95.2	0.1	-1.75	0.80	0.78	2.10	3.6	0.003	0.65	0.0	0.04	15.40	0.00	2.108	10.99	1.90	4.8	95.2	0.0	-0.23	0.42	0.81	0.81	2.31	16186	2045	4	0	10	0	0	logfile
✔	7Q5R	13845	2024-02-21	2021-11-04	3.84	4.21	3.98	4.1	0.006	0.93	0.0	0.07	10.54	0.00	2.365	4.40	0.57	1.9	98.1	0.0	0.17	0.71	0.58	0.16	4.1	0.004	0.81	2.0	0.05	14.95	0.01	1.776	15.55	2.77	1.5	98.5	0.0	1.20	3.75	0.81	0.85	1.45	95520	12600	60	0	0	0	0	logfile
✔	7VV6	32139	2024-02-13	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.05	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.003	0.58	0.0	0.04	16.46	0.00	2.189	6.66	3.73	2.2	97.8	0.0	3.08	0.66	0.65	0.86	1.99	2227	271	1	0	2	0	0	logfile
✔	7VV5	32138	2024-02-14	2021-11-04	2.76	2.94	—	2.8	0.012	1.17	0.0	0.07	18.05	0.01	2.236	4.22	10.86	3.8	96.2	0.0	-2.82	0.77	0.86	3.43	2.8	0.003	0.63	0.0	0.04	17.44	0.00	2.130	10.27	3.13	2.4	97.6	0.0	1.12	1.20	0.75	0.87	3.48	8829	1122	5	0	2	0	0	logfile
✔	7SQ6	25377	2024-02-16	2021-11-04	2.32	2.12	—	2.3	0.007	0.81	0.0	0.06	16.32	0.00	2.408	4.99	0.00	2.8	97.2	0.0	1.57	0.69	0.88	4.86	2.3	0.003	0.53	0.0	0.04	16.27	0.00	2.238	3.30	1.67	1.6	98.4	0.0	2.30	0.92	0.70	0.90	4.76	15342	1868	16	0	14	12	0	logfile
✔	7VV4	32137	2024-02-13	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.73	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.74	0.0	0.04	17.04	0.00	2.178	11.03	2.92	1.9	97.7	0.4	2.27	0.55	0.58	0.76	1.15	2181	269	3	0	1	0	0	logfile
✔	7VV3	32136	2024-02-14	2021-11-04	2.97	3.10	—	3.0	0.009	1.26	0.0	0.07	13.10	0.01	1.600	7.63	0.75	3.3	96.7	0.0	-1.72	0.73	0.85	3.32	3.1	0.003	0.68	0.0	0.04	16.33	0.00	2.131	8.62	2.67	1.7	98.3	0.0	1.26	1.18	0.74	0.87	2.58	8633	1105	5	0	1	0	0	logfile
✔	7SQ0	25373	2024-02-14	2021-11-04	3.7	3.39	3.64	3.6	0.004	0.68	0.0	0.05	13.62	0.00	2.215	4.77	0.00	2.6	97.4	0.0	-2.91	0.72	0.83	3.99	3.6	0.003	0.58	0.0	0.05	14.29	0.00	1.996	6.35	0.20	4.0	96.0	0.0	1.53	1.89	0.72	0.83	3.53	9160	593	5	0	42	0	4286	logfile
✔	7Q5P	13843	2024-02-20	2021-11-04	3.3	3.38	3.07	3.9	0.008	0.73	0.0	0.05	14.11	0.01	2.188	8.54	0.00	7.2	92.5	0.3	-2.06	0.82	0.77	2.88	3.2	0.004	0.65	0.0	0.04	15.11	0.00	1.984	12.83	2.70	9.0	91.0	0.0	-1.42	0.98	0.81	0.77	2.31	29112	1881	3	0	0	0	14244	logfile
✔	7VUZ	32132	2024-02-14	2021-11-04	2.89	3.37	—	3.3	0.010	1.40	3.0	0.08	13.54	0.01	2.035	6.79	1.39	5.3	94.7	0.0	-2.89	0.61	0.74	2.31	3.3	0.003	0.73	0.0	0.05	16.70	0.00	2.152	13.52	2.78	4.5	95.5	0.0	-0.15	1.31	0.59	0.74	1.25	8584	1097	6	0	1	0	0	logfile
✔	7VV0	32133	2024-02-13	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.05	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.60	0.0	0.04	15.02	0.00	2.276	9.47	5.02	3.4	96.6	0.0	2.02	1.28	0.63	0.80	1.47	2175	268	2	0	1	0	0	logfile
✔	7SQ8	25379	2024-02-16	2021-11-04	2.598	2.10	—	2.5	0.004	0.55	0.0	0.04	13.32	0.00	2.199	3.68	0.00	3.3	96.7	0.0	1.93	0.64	0.86	4.26	2.4	0.005	0.62	0.0	0.04	15.19	0.00	2.166	4.73	1.27	3.5	96.5	0.0	2.11	0.31	0.64	0.88	4.38	15117	1852	13	0	9	8	0	logfile
✔	7Q5Q	13844	2024-02-24	2021-11-04	4.38	5.03	4.75	4.4	0.009	1.41	0.0	0.07	13.56	0.01	2.152	3.06	2.08	2.6	97.4	0.0	-1.58	0.90	0.88	—	4.4	0.002	0.62	0.0	0.04	12.47	0.00	2.250	8.21	0.00	1.3	98.7	0.0	2.21	0.81	0.90	0.88	—	42336	5472	24	0	0	0	0	logfile
✔	7VUY	32131	2024-02-14	2021-11-04	2.84	3.26	—	3.2	0.010	1.12	0.0	0.07	13.83	0.01	1.806	6.64	0.42	4.5	95.5	0.0	-1.74	0.62	0.81	3.16	3.2	0.003	0.68	0.0	0.04	16.69	0.00	2.093	12.24	2.42	3.4	96.6	0.0	0.03	0.95	0.62	0.82	2.68	8708	1112	6	0	1	0	0	logfile
✔	7SQ1	25376	2024-02-17	2021-11-04	3.8	4.01	3.71	3.8	0.012	1.48	0.0	0.08	12.39	0.01	1.753	3.57	0.74	1.2	98.8	0.0	2.40	0.76	0.80	2.37	3.8	0.003	0.95	0.0	0.05	13.30	0.00	2.068	6.59	2.22	4.1	95.9	0.0	0.83	1.40	0.76	0.81	1.77	18340	2157	42	0	98	0	0	logfile

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