Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q59	13829	2024-02-25	2021-11-03	4.36	4.89	—	4.4	0.003	0.63	0.0	0.04	10.22	0.00	1.925	6.09	0.72	3.6	96.4	0.0	-0.17	0.79	0.65	—	4.4	0.004	0.69	0.0	0.04	11.74	0.00	1.967	16.26	0.00	4.5	95.5	0.0	-0.14	1.43	0.90	0.84	—	47632	6118	14	0	6	0	0	logfile
✔	7Q5A	13830	2024-02-14	2021-11-03	2.46	2.69	—	2.6	0.012	1.10	0.0	0.06	9.54	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.055	3.97	261.0	0.21	16.64	0.02	1.937	25.81	5.71	0.0	100.0	0.0	0.81	1.64	0.67	0.86	6.31	61600	5600	800	0	1600	0	0	logfile
✔	7Q5B	13831	2024-02-18	2021-11-03	3.98	3.20	—	3.1	0.004	0.91	0.0	0.05	21.26	0.01	2.231	9.48	0.10	13.2	86.5	0.2	-2.85	0.72	0.60	0.71	3.1	0.003	0.72	0.0	0.04	22.41	0.00	2.080	18.03	2.74	13.5	86.4	0.1	-2.14	1.63	0.74	0.64	0.44	21746	2255	13	168	0	0	0	logfile
✔	7SP7	25367	2024-02-13	2021-11-02	3.1	3.61	—	3.5	0.008	0.68	0.0	0.05	14.83	0.00	2.219	3.57	0.00	1.4	98.6	0.0	2.52	0.60	0.73	1.83	3.5	0.003	0.52	0.0	0.04	15.76	0.00	2.210	5.65	2.38	2.3	97.7	0.0	1.57	0.59	0.66	0.81	3.12	6052	739	4	1	4	0	0	logfile
✔	7SP6	25366	2024-02-13	2021-11-02	3.1	3.58	—	3.5	0.004	0.58	0.0	0.04	14.43	0.00	2.308	5.40	0.00	1.5	98.5	0.0	1.72	0.61	0.75	1.78	3.5	0.002	0.55	0.0	0.04	15.98	0.00	2.170	6.92	2.56	2.5	97.5	0.0	1.08	0.64	0.63	0.81	2.46	5957	733	5	0	3	0	0	logfile
✔	7VUH	32128	2024-02-14	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.68	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.003	0.62	0.0	0.04	15.76	0.00	1.996	13.01	3.44	5.3	94.7	0.0	-1.05	0.36	0.71	0.72	2.71	8302	1042	5	0	1	0	0	logfile
✔	7VUi	32129	2024-02-14	2021-11-02	3.3	2.40	—	3.2	0.003	0.63	0.0	0.04	14.88	0.00	2.165	10.92	0.00	4.1	95.8	0.1	-0.34	0.73	0.71	1.24	2.2	0.003	0.63	0.0	0.04	16.89	0.00	2.020	11.83	2.79	3.8	96.1	0.1	-0.11	0.41	0.75	0.76	1.64	8287	1034	7	0	3	0	0	logfile
✔	7Q4V	13818	2024-02-17	2021-11-02	4.7	6.40	—	5.9	0.007	1.12	8.0	0.06	14.76	0.01	2.129	8.21	1.01	4.3	95.6	0.2	-2.14	0.77	0.74	—	5.9	0.003	0.72	0.0	0.05	13.40	0.00	2.108	21.31	0.05	4.5	95.5	0.0	-0.56	1.77	0.76	0.76	—	19303	2520	12	0	24	0	0	logfile
✔	7SP9	25369	2024-02-13	2021-11-02	2.9	3.20	—	3.1	0.004	0.57	0.0	0.05	12.07	0.00	2.245	5.66	0.00	1.2	98.8	0.0	1.62	0.71	0.78	2.80	3.1	0.003	0.61	0.0	0.04	15.00	0.00	2.275	10.05	2.07	2.8	97.1	0.1	1.13	0.64	0.73	0.85	3.48	5966	737	3	0	2	0	0	logfile
✔	7Q4W	13819	2024-02-17	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.006	0.83	0.0	0.05	15.45	0.00	2.105	29.90	2.17	5.9	94.1	0.0	-0.67	1.30	0.92	0.85	-0.70	18050	2364	12	0	22	0	0	logfile
✔	7SP1	25364	2024-02-13	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	11.67	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	4.1	0.007	0.95	0.0	0.06	19.98	0.01	2.152	25.13	3.84	15.9	84.1	0.0	-4.09	1.67	0.40	0.76	4.40	4343	540	17	20	0	0	0	logfile
✔	7SPA	25370	2024-02-13	2021-11-02	2.8	3.04	—	2.9	0.004	0.57	0.0	0.05	12.25	0.00	2.275	6.27	0.00	1.4	98.6	0.0	1.68	0.71	0.77	2.48	2.9	0.004	0.63	0.0	0.04	15.62	0.00	2.167	9.27	1.91	3.2	96.7	0.1	1.38	0.78	0.76	0.87	4.28	6017	737	3	0	3	0	0	logfile
✔	7VUG	32127	2024-02-14	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.56	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.63	0.0	0.04	15.81	0.00	1.979	12.90	2.66	5.9	94.1	0.0	-0.75	0.34	0.73	0.74	2.18	8924	1127	6	0	1	0	0	logfile
✔	7SP8	25368	2024-02-13	2021-11-02	2.7	2.98	—	2.9	0.008	0.77	0.0	0.05	14.94	0.00	2.204	5.45	0.16	1.5	98.5	0.0	2.53	0.72	0.82	2.37	2.9	0.004	0.59	0.0	0.04	16.66	0.00	2.105	7.19	2.37	1.8	98.2	0.0	1.83	0.60	0.75	0.88	3.36	6090	742	4	0	5	0	0	logfile
✔	7SoY	25363	2024-02-15	2021-11-01	3.4	4.73	—	3.7	0.003	0.63	0.0	0.04	12.63	0.00	2.231	12.96	0.37	1.7	98.3	0.0	1.32	0.90	0.83	0.53	3.7	0.003	0.63	0.0	0.04	14.46	0.00	2.084	14.76	1.11	2.3	97.7	0.0	1.52	0.46	0.91	0.85	0.54	12180	1529	4	0	0	0	0	logfile
✔	7VU8	32126	2024-02-13	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	16.69	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.002	0.61	0.0	0.04	19.75	0.00	2.352	5.65	1.32	4.8	95.2	0.0	-1.04	1.09	0.39	0.76	2.94	1433	170	1	0	1	0	0	logfile
✔	7Q4K	13805	2024-02-25	2021-10-31	3.0	3.23	—	3.1	0.015	1.62	2.0	0.08	22.76	0.02	0.056	3.83	0.63	4.5	95.4	0.1	-3.83	0.77	0.82	2.32	3.1	0.003	0.67	0.0	0.04	22.69	0.01	1.804	7.88	3.45	3.8	96.1	0.1	-0.58	1.12	0.81	0.89	2.48	146607	5682	73	4711	173	800	0	logfile
✔	7Q4E	13804	2024-02-14	2021-10-30	3.63	3.95	3.60	3.8	0.008	0.99	0.0	0.06	19.12	0.01	1.857	5.12	0.00	2.5	97.5	0.0	-1.91	0.70	0.77	3.06	3.8	0.003	0.58	0.0	0.03	14.57	0.00	1.938	10.33	0.76	3.5	96.5	0.0	1.36	1.50	0.69	0.78	1.95	10049	608	9	0	29	0	4731	logfile
✔	7VTQ	32120	2024-02-19	2021-10-30	3.55	4.59	—	3.2	0.004	0.68	0.0	0.04	15.12	0.00	2.136	14.14	0.05	5.6	94.4	0.0	-0.05	0.74	0.61	0.73	3.3	0.002	0.69	0.0	0.04	15.83	0.00	2.127	14.24	0.60	3.1	96.9	0.0	0.39	0.52	0.87	0.80	0.58	76572	9468	24	0	24	0	0	logfile
✔	7Q4D	13803	2024-02-18	2021-10-30	3.78	4.08	3.81	3.9	0.008	1.01	0.0	0.06	19.01	0.01	1.859	4.92	0.00	2.5	97.5	0.0	-1.89	0.83	0.80	3.21	3.9	0.003	0.57	0.0	0.03	14.19	0.00	1.443	7.29	1.24	2.7	97.3	0.0	1.41	1.69	0.82	0.79	1.70	20098	1216	18	0	58	0	9462	logfile

• ← previous
• Page 285 of 588
• next →