Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VTQ	32120	2024-02-19	2021-10-30	3.55	4.59	—	3.2	0.004	0.68	0.0	0.04	15.12	0.00	2.136	14.14	0.05	5.6	94.4	0.0	-0.05	0.74	0.61	0.73	3.3	0.002	0.69	0.0	0.04	15.83	0.00	2.127	14.24	0.60	3.1	96.9	0.0	0.39	0.52	0.87	0.80	0.58	76572	9468	24	0	24	0	0	logfile
✔	7Q4C	13801	2024-02-14	2021-10-30	4.08	4.49	4.12	4.4	0.007	0.92	0.0	0.05	14.78	0.01	2.077	6.86	0.00	3.3	96.7	0.0	-1.44	0.71	0.75	—	4.4	0.003	0.61	0.0	0.04	14.37	0.00	2.009	8.21	0.00	2.6	97.4	0.0	1.75	0.89	0.69	0.74	—	9503	585	5	0	11	0	4598	logfile
✔	7Q3Y	13797	2024-02-17	2021-10-29	4.34	4.62	4.39	4.4	0.007	0.90	0.0	0.05	17.14	0.01	1.969	5.69	0.19	3.2	96.8	0.0	-1.33	0.84	0.78	—	4.4	0.003	0.56	0.0	0.04	12.94	0.00	1.445	9.79	0.10	3.1	96.8	0.1	1.75	1.38	0.84	0.78	—	19627	1201	11	0	37	1	9386	logfile
✔	7SoE	25268	2024-02-19	2021-10-29	2.8	2.87	2.84	2.8	0.010	1.29	0.0	0.07	9.44	0.01	2.416	1.06	0.15	2.0	98.0	0.0	0.29	0.74	0.80	3.95	2.8	0.004	0.64	0.0	0.05	12.52	0.00	2.131	3.17	2.33	2.2	97.8	0.0	0.59	0.53	0.73	0.85	3.44	25947	3783	15	0	57	0	0	logfile
✔	7SoF	25269	2024-02-13	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.31	1.0	0.08	11.42	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.003	0.62	0.0	0.04	12.28	0.00	2.171	4.62	3.82	2.3	97.7	0.0	0.29	1.36	0.68	0.82	3.37	3735	488	5	0	9	0	0	logfile
✔	7SoA	25264	2024-02-13	2021-10-29	3.1	3.33	3.14	3.3	0.011	1.27	0.0	0.08	10.15	0.01	2.194	1.06	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.004	0.61	0.0	0.05	13.23	0.00	2.224	3.72	2.18	3.0	97.0	0.0	1.10	0.55	0.67	0.90	5.03	3850	477	5	0	6	0	0	logfile
✔	7SoB	25265	2024-02-21	2021-10-29	2.4	2.49	2.52	2.5	0.012	1.36	12.0	0.08	8.95	0.01	2.350	1.27	0.00	1.9	98.1	0.0	0.60	0.72	0.77	4.78	2.5	0.003	0.63	0.0	0.05	12.66	0.00	2.002	4.10	1.02	1.7	98.3	0.0	0.59	0.52	0.69	0.73	4.34	30000	4443	21	0	51	426	0	logfile
✔	7SoC	25266	2024-02-13	2021-10-29	3.3	3.48	3.25	3.5	0.011	1.22	0.0	0.07	13.13	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	3.5	0.004	0.59	0.0	0.04	12.95	0.00	2.179	4.46	2.20	2.6	97.4	0.0	-0.24	0.52	0.68	0.90	3.92	3448	433	5	0	7	0	0	logfile
✔	7SoD	25267	2024-02-13	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.24	0.0	0.08	9.17	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.005	0.59	0.0	0.05	12.44	0.00	2.288	4.13	0.74	3.3	96.7	0.0	0.88	1.53	0.69	0.91	5.54	3830	473	5	0	7	0	0	logfile
✔	7Q49	13799	2024-02-14	2021-10-29	3.72	4.35	3.97	4.2	0.008	1.08	0.0	0.06	19.17	0.01	1.995	6.54	0.19	2.9	97.1	0.0	-1.50	0.67	0.70	2.02	4.2	0.004	0.62	0.0	0.04	15.07	0.00	1.882	9.04	1.32	3.4	96.6	0.0	1.09	0.85	0.66	0.68	1.37	10124	616	8	0	26	1	4788	logfile
✔	7So9	25263	2024-02-22	2021-10-29	2.4	2.43	2.40	2.4	0.010	1.19	0.0	0.07	10.51	0.01	2.154	0.79	0.17	1.5	98.5	0.0	0.67	0.74	0.78	4.76	2.4	0.003	0.58	0.0	0.04	14.18	0.00	2.157	4.44	2.07	2.0	98.0	0.0	1.16	1.00	0.73	0.76	4.69	34470	4434	24	0	51	354	0	logfile
✔	7SNH	25226	2024-02-16	2021-10-28	2.2	2.26	—	2.2	0.006	0.75	0.0	0.05	20.23	0.01	2.213	6.69	1.32	1.7	98.3	0.0	0.45	0.76	0.86	4.93	2.2	0.005	0.66	0.0	0.05	19.00	0.01	2.197	6.85	2.28	2.5	97.5	0.0	0.31	0.36	0.77	0.89	4.90	15828	1904	8	0	8	0	0	logfile
✔	7Q3U	13795	2024-02-13	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.005	0.94	0.0	0.05	18.90	0.01	2.184	31.37	2.38	16.2	83.8	0.0	-6.09	2.23	0.34	0.61	3.33	2355	355	5	0	0	0	0	logfile
✔	7SNG	25225	2024-02-16	2021-10-28	2.8	3.04	—	3.0	0.004	0.63	2.0	0.04	14.54	0.01	2.201	10.64	0.25	3.3	96.5	0.2	-0.68	0.74	0.85	4.43	3.0	0.002	0.55	0.0	0.04	16.96	0.00	2.184	9.97	1.04	3.2	96.8	0.1	0.12	0.36	0.76	0.88	3.57	15204	1868	8	0	0	104	0	logfile
✔	7SN7	25213	2024-02-21	2021-10-27	4.2	4.22	—	4.1	0.003	0.63	0.0	0.04	13.41	0.00	2.099	13.03	0.07	8.3	91.7	0.0	0.65	0.47	0.76	—	4.1	0.004	0.67	0.0	0.04	14.01	0.00	2.051	13.65	0.04	9.9	90.1	0.0	0.19	0.62	0.49	0.79	—	90482	12558	23	0	0	0	0	logfile
✔	7Q3D	13789	2024-02-18	2021-10-27	3.35	4.59	3.40	3.7	0.013	1.35	0.0	0.08	11.91	0.01	2.466	1.34	0.00	1.5	98.5	0.0	0.50	0.86	0.73	0.90	3.7	0.004	0.67	0.0	0.04	14.88	0.00	1.913	15.82	2.34	4.6	95.4	0.0	0.05	2.92	0.87	0.74	0.91	22298	1391	3	0	0	0	11249	logfile
✔	7Q3H	13792	2024-02-18	2021-10-27	3.2	3.00	3.19	3.2	0.004	0.57	0.0	0.04	14.16	0.00	2.195	9.02	0.00	5.6	94.4	0.0	-0.67	0.74	0.84	3.36	3.3	0.003	0.57	0.0	0.04	16.14	0.00	2.220	8.79	2.09	5.7	94.3	0.0	-0.80	0.52	0.66	0.84	3.23	21620	2795	5	0	0	0	0	logfile
✔	7SN3	25210	2024-02-20	2021-10-27	3.1	3.31	—	3.2	0.009	1.11	4.0	0.07	14.89	0.01	1.922	5.26	0.10	0.4	99.3	0.3	-0.84	0.75	0.82	3.32	3.2	0.004	0.69	0.0	0.05	14.46	0.00	2.122	9.04	1.70	5.1	94.8	0.1	-0.06	0.94	0.76	0.87	2.87	27447	3451	15	0	54	0	0	logfile
✔	7VT0	32117	2024-02-14	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.6	0.003	0.75	0.0	0.04	15.94	0.00	2.161	9.82	2.09	13.1	86.0	0.9	-3.14	1.19	0.68	0.78	2.82	10536	1326	2	0	0	0	0	logfile
✔	7SN9	25215	2024-02-15	2021-10-27	3.5	4.01	—	3.8	0.002	0.52	0.0	0.04	13.55	0.00	2.135	9.66	0.20	5.5	94.5	0.0	2.56	0.59	0.85	2.04	3.8	0.004	0.57	0.0	0.04	15.06	0.00	2.137	10.29	2.10	7.1	92.9	0.0	2.21	0.38	0.59	0.87	1.92	119154	16548	42	0	0	0	0	logfile

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