Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SN9	25215	2024-02-15	2021-10-27	3.5	4.01	—	3.8	0.002	0.52	0.0	0.04	13.55	0.00	2.135	9.66	0.20	5.5	94.5	0.0	2.56	0.59	0.85	2.04	3.8	0.004	0.57	0.0	0.04	15.06	0.00	2.137	10.29	2.10	7.1	92.9	0.0	2.21	0.38	0.59	0.87	1.92	119154	16548	42	0	0	0	0	logfile
✔	7Q3H	13792	2024-02-18	2021-10-27	3.2	3.00	3.19	3.2	0.004	0.57	0.0	0.04	14.16	0.00	2.195	9.02	0.00	5.6	94.4	0.0	-0.67	0.74	0.84	3.36	3.3	0.003	0.57	0.0	0.04	16.14	0.00	2.220	8.79	2.09	5.7	94.3	0.0	-0.80	0.52	0.66	0.84	3.23	21620	2795	5	0	0	0	0	logfile
✔	7Q3D	13789	2024-02-18	2021-10-27	3.35	4.59	3.40	3.7	0.013	1.35	0.0	0.08	11.91	0.01	2.466	1.34	0.00	1.5	98.5	0.0	0.50	0.86	0.73	0.90	3.7	0.004	0.67	0.0	0.04	14.88	0.00	1.913	15.82	2.34	4.6	95.4	0.0	0.05	2.92	0.87	0.74	0.91	22298	1391	3	0	0	0	11249	logfile
✔	7SN3	25210	2024-02-20	2021-10-27	3.1	3.31	—	3.2	0.009	1.11	4.0	0.07	14.89	0.01	1.922	5.26	0.10	0.4	99.3	0.3	-0.84	0.75	0.82	3.32	3.2	0.004	0.69	0.0	0.05	14.46	0.00	2.122	9.04	1.70	5.1	94.8	0.1	-0.06	0.94	0.76	0.87	2.87	27447	3451	15	0	54	0	0	logfile
✔	7Q3G	13791	2024-02-17	2021-10-27	3.5	4.05	3.44	3.7	0.004	0.64	0.0	0.05	13.01	0.00	2.142	10.52	0.00	6.6	93.4	0.0	-0.94	0.71	0.71	3.02	3.7	0.003	0.63	0.0	0.04	14.82	0.00	2.197	10.24	1.34	5.7	94.3	0.0	-0.21	0.68	0.78	0.85	2.74	19570	2585	10	0	5	0	0	logfile
✔	7SMR	25206	2024-02-17	2021-10-26	2.77	2.96	—	2.9	0.006	0.73	0.0	0.05	15.67	0.00	2.131	4.30	0.00	2.8	97.2	0.0	1.03	0.80	0.87	4.35	2.9	0.004	0.53	0.0	0.04	14.64	0.00	2.172	6.15	1.07	2.2	97.8	0.0	1.43	1.12	0.80	0.88	3.88	17037	2022	20	0	34	21	0	logfile
✔	7Q2Y	13784	2024-02-17	2021-10-26	3.0	2.21	—	2.0	0.003	0.61	0.0	0.04	16.40	0.01	2.047	8.57	0.42	3.6	96.3	0.0	2.39	0.74	0.73	1.65	2.0	0.005	0.83	1.0	0.04	19.76	0.00	1.842	11.09	2.92	3.9	96.1	0.0	1.81	0.59	0.77	0.79	1.90	17754	2076	8	56	6	0	0	logfile
✔	7SMS	25207	2024-02-17	2021-10-26	3.18	3.33	—	3.3	0.006	0.78	0.0	0.05	17.59	0.00	2.187	5.21	0.00	2.8	97.2	0.0	1.21	0.78	0.85	3.74	3.3	0.002	0.49	0.0	0.04	15.25	0.00	2.212	6.79	0.70	2.0	98.0	0.0	1.86	1.14	0.79	0.87	3.38	17051	2015	15	0	32	0	0	logfile
✔	7Q2S	13782	2024-02-14	2021-10-26	3.7	3.23	—	3.3	0.010	1.40	0.0	0.08	12.76	0.01	1.217	18.46	0.00	8.6	90.7	0.7	-4.24	0.45	0.63	1.80	3.2	0.006	1.07	7.0	0.05	18.47	0.01	1.953	20.74	6.50	7.2	92.8	0.0	-2.77	1.87	0.52	0.69	2.16	62377	7497	98	147	0	0	0	logfile
✔	7SMT	25208	2024-02-17	2021-10-26	2.56	2.95	—	2.8	0.006	0.74	0.0	0.05	16.08	0.00	2.198	5.36	0.00	2.5	97.5	0.0	1.12	0.80	0.86	4.43	2.8	0.004	0.57	2.0	0.04	14.71	0.00	2.173	5.53	1.45	2.1	97.9	0.0	1.75	3.24	0.81	0.88	3.90	17016	2022	15	0	33	0	0	logfile
✔	7SMM	25202	2024-02-17	2021-10-26	2.5	2.86	—	2.7	0.006	0.78	0.0	0.05	16.09	0.00	2.099	3.47	0.00	4.1	95.9	0.0	1.36	0.80	0.86	4.48	2.7	0.003	0.49	0.0	0.04	14.99	0.00	2.258	5.18	1.17	3.4	96.6	0.0	1.82	0.29	0.81	0.88	4.04	17256	2030	20	0	39	63	0	logfile
✔	7SMP	25204	2024-02-20	2021-10-26	3.28	3.55	3.42	3.5	0.004	0.76	3.0	0.04	14.91	0.01	1.944	6.99	0.00	4.9	95.1	0.0	0.04	0.57	0.74	2.64	3.5	0.005	0.80	4.0	0.04	15.46	0.01	1.914	10.58	1.50	4.7	95.3	0.0	0.43	0.37	0.58	0.77	2.29	26477	1668	4	0	5	0	13353	logfile
✔	7Q2Z	13786	2024-02-14	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.002	0.52	0.0	0.03	19.87	0.00	2.133	3.95	1.46	2.0	97.9	0.1	2.28	1.21	0.70	0.86	1.89	8258	902	4	46	0	0	0	logfile
✔	7Q2X	13783	2024-02-17	2021-10-26	3.0	2.22	—	2.1	0.002	0.55	0.0	0.04	17.52	0.00	2.035	7.69	0.11	2.6	97.4	0.0	2.57	0.74	0.70	1.84	2.0	0.004	0.67	0.0	0.04	20.36	0.00	1.890	10.15	2.58	3.4	96.6	0.0	1.89	1.68	0.78	0.79	2.09	18240	2098	8	72	6	0	0	logfile
✔	7VRW	32108	2024-02-19	2021-10-25	3.6	3.72	—	3.7	0.004	0.67	0.0	0.05	14.53	0.00	2.154	11.26	0.04	5.1	94.9	0.0	-2.22	0.68	0.75	2.29	3.7	0.004	0.65	0.0	0.05	15.14	0.00	2.104	11.73	2.92	7.3	92.7	0.0	-1.64	1.11	0.69	0.76	2.16	25989	3231	20	0	57	0	0	logfile
✔	7VRV	32107	2024-02-19	2021-10-25	4.2	4.29	—	4.2	0.004	0.67	0.0	0.05	13.40	0.00	2.071	14.14	0.00	6.7	93.3	0.0	-2.00	0.76	0.79	—	4.2	0.006	0.71	0.0	0.05	13.31	0.00	2.076	15.79	0.00	8.3	91.7	0.0	-1.54	1.09	0.76	0.79	—	26151	3257	19	0	57	0	0	logfile
✔	7SLQ	25198	2024-02-13	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	19.87	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.003	0.63	0.0	0.04	19.37	0.01	2.149	10.92	3.37	4.9	95.1	0.0	-0.43	1.32	0.75	0.73	1.92	5451	559	4	50	1	0	0	logfile
✔	7SLP	25197	2024-02-13	2021-10-24	4.1	4.19	—	4.2	0.008	1.22	1.0	0.07	19.40	0.01	2.221	7.09	1.77	4.2	95.3	0.5	-3.76	0.62	0.56	—	4.1	0.002	0.63	0.0	0.04	17.72	0.00	2.200	9.52	0.00	4.6	95.4	0.0	0.09	1.46	0.70	0.70	—	5176	561	4	37	0	0	0	logfile
✔	7SL9	25195	2024-02-13	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	3.7	0.005	0.80	0.0	0.04	15.79	0.00	2.074	13.82	4.25	6.7	93.3	0.0	-1.27	1.21	0.64	0.83	1.77	4712	619	3	0	1	0	0	logfile
✔	7SLA	25196	2024-02-13	2021-10-23	3.15	3.74	—	3.7	0.009	1.01	2.0	0.07	13.72	0.01	2.210	3.63	1.74	6.8	93.2	0.0	-4.25	0.59	0.79	1.94	3.6	0.002	0.59	0.0	0.04	15.09	0.00	2.320	3.90	2.43	4.5	95.5	0.0	0.19	0.64	0.55	0.80	1.80	5458	702	3	0	1	0	0	logfile

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