Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SL8	25194	2024-02-13	2021-10-23	3.4	3.98	—	3.9	0.005	0.97	0.0	0.06	14.66	0.01	2.316	8.99	0.92	8.1	91.9	0.0	-4.09	0.62	0.80	1.65	3.9	0.003	0.69	0.0	0.04	15.78	0.00	2.194	11.74	4.99	6.6	93.4	0.0	0.03	0.51	0.61	0.80	1.11	5295	700	3	0	1	0	0	logfile
✔	7SL9	25195	2024-02-13	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	3.7	0.005	0.80	0.0	0.04	15.79	0.00	2.074	13.82	4.25	6.7	93.3	0.0	-1.27	1.21	0.64	0.83	1.77	4712	619	3	0	1	0	0	logfile
✔	7SL3	25190	2024-02-17	2021-10-22	3.4	3.65	—	3.5	0.002	0.54	0.0	0.04	13.25	0.00	2.238	8.44	0.32	6.4	93.4	0.2	-0.71	0.80	0.81	2.46	3.5	0.002	0.55	0.0	0.04	14.24	0.00	2.191	8.12	0.44	5.7	94.3	0.0	-0.65	1.13	0.81	0.84	2.55	14016	1736	6	0	0	0	0	logfile
✔	7SL6	25192	2024-02-17	2021-10-22	3.7	3.77	—	3.5	0.003	0.55	0.0	0.04	13.38	0.00	2.201	10.19	0.25	6.5	93.3	0.2	-0.68	0.81	0.81	2.33	3.5	0.003	0.58	0.0	0.04	14.94	0.00	2.019	12.15	1.84	7.4	92.5	0.1	-0.61	1.15	0.81	0.82	2.18	14004	1734	6	0	0	0	0	logfile
✔	7SL7	25193	2024-02-17	2021-10-22	3.1	3.35	—	3.4	0.002	0.56	0.0	0.04	13.08	0.00	2.149	8.91	0.24	5.5	94.2	0.3	-0.86	0.77	0.82	3.06	3.3	0.003	0.59	0.0	0.04	15.10	0.00	2.192	10.46	1.56	6.1	93.9	0.0	-0.80	0.97	0.77	0.85	2.84	14732	1826	10	0	0	0	0	logfile
✔	7Q1Z	13776	2024-02-19	2021-10-22	3.4	2.41	—	4.0	0.004	0.61	0.0	0.04	12.72	0.00	2.074	6.27	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.2	0.004	0.74	0.0	0.05	15.15	0.00	2.096	11.53	2.35	3.1	96.9	0.0	-0.07	1.57	0.74	0.74	1.29	23694	2916	21	0	63	0	0	logfile
✔	7SL1	25188	2024-02-20	2021-10-22	3.4	3.69	—	3.6	0.002	0.60	0.0	0.04	13.62	0.00	2.186	10.54	0.00	7.8	92.0	0.2	-1.04	0.80	0.79	3.27	3.5	0.004	0.62	0.0	0.04	15.43	0.00	2.102	11.94	1.29	8.6	91.4	0.0	-1.00	0.41	0.82	0.85	2.90	13830	1714	6	0	0	0	0	logfile
✔	7SL2	25189	2024-02-17	2021-10-22	3.6	3.89	—	3.5	0.003	0.56	0.0	0.04	13.63	0.00	2.147	11.07	0.18	7.0	92.7	0.2	-0.82	0.81	0.82	2.07	3.4	0.004	0.57	0.0	0.04	15.00	0.00	2.095	11.39	1.29	6.8	93.2	0.0	-0.94	1.14	0.82	0.83	1.92	14477	1796	10	0	0	0	0	logfile
✔	7VQX	32095	2024-02-14	2021-10-21	2.74	2.89	—	2.9	0.004	0.55	0.0	0.04	14.12	0.00	2.094	8.36	0.00	3.6	96.4	0.0	0.32	0.63	0.79	3.28	2.9	0.005	0.61	0.0	0.04	16.28	0.00	2.101	7.41	1.83	3.6	96.4	0.0	0.88	0.30	0.63	0.82	2.80	9049	1148	6	0	0	0	0	logfile
✔	7VR1	32096	2024-02-14	2021-10-21	3.4	3.67	—	3.6	0.003	0.55	0.0	0.04	13.99	0.00	2.253	7.05	0.00	5.8	94.2	0.0	-0.76	0.68	0.84	1.98	3.6	0.003	0.59	0.0	0.04	15.62	0.00	2.221	8.09	1.19	6.1	93.9	0.0	0.67	0.35	0.69	0.86	1.57	9522	1196	2	0	0	0	0	logfile
✔	7VQo	32091	2024-02-23	2021-10-20	2.19	3.23	2.29	3.0	0.008	0.75	0.0	0.05	17.42	0.00	1.865	12.17	3.25	9.3	90.7	0.0	-1.44	0.58	0.80	3.45	3.0	0.003	0.61	0.0	0.04	17.35	0.00	1.978	10.74	2.79	7.7	92.3	0.0	-0.77	0.28	0.57	0.79	3.36	38640	4720	12	0	4	688	0	logfile
✔	7VQQ	32092	2024-02-13	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.003	0.68	0.0	0.04	12.39	0.00	2.279	2.21	1.83	3.4	96.6	0.0	-4.88	0.27	0.47	0.87	4.65	1968	273	3	0	0	0	0	logfile
✔	7VQ7	32087	2024-02-13	2021-10-19	3.6	3.68	—	3.7	0.007	0.75	0.0	0.04	16.81	0.00	2.070	11.39	4.87	3.9	96.1	0.0	-1.30	0.61	0.81	2.00	3.7	0.003	0.58	0.0	0.04	17.91	0.00	2.181	8.16	3.24	2.5	97.5	0.0	3.68	1.25	0.58	0.79	1.19	6127	778	3	0	1	0	0	logfile
✔	7VQ3	32084	2024-02-13	2021-10-19	3.2	3.40	—	3.4	0.005	0.55	0.0	0.04	14.66	0.00	2.061	5.90	0.00	6.6	93.4	0.0	-0.93	0.65	0.83	2.45	3.4	0.003	0.53	0.0	0.04	16.64	0.00	2.232	7.08	2.87	3.2	96.8	0.0	3.18	0.54	0.64	0.84	1.82	6306	800	2	0	0	0	0	logfile
✔	7VQ4	32085	2024-02-13	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.68	0.0	0.04	17.31	0.00	2.217	8.02	4.02	3.9	96.1	0.0	3.15	1.27	0.59	0.78	0.28	6306	800	2	0	0	0	0	logfile
✔	7VQ5	32086	2024-02-13	2021-10-19	3.1	3.31	—	3.3	0.009	0.77	0.0	0.05	14.85	0.00	2.110	7.38	0.14	7.4	92.6	0.0	-3.56	0.66	0.84	2.48	3.4	0.002	0.52	0.0	0.04	16.01	0.00	2.190	8.41	1.72	3.7	96.3	0.0	2.32	1.11	0.62	0.82	1.94	6315	800	2	0	1	0	0	logfile
✔	7SK2	25170	2024-02-13	2021-10-19	3.82	4.03	—	3.9	0.007	1.22	0.0	0.06	13.67	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.83	0.0	0.04	16.19	0.00	2.147	19.11	4.23	4.5	95.5	0.0	-0.35	0.52	0.50	0.70	1.15	4177	532	1	0	1	0	0	logfile
✔	7SK1	25169	2024-02-13	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.006	1.22	1.0	0.05	15.73	0.01	2.256	8.11	2.83	5.4	94.6	0.0	0.21	0.62	0.58	0.73	0.71	4291	524	4	0	7	0	0	logfile
✔	7SK6	25174	2024-02-14	2021-10-19	4.0	4.42	—	4.1	0.018	1.92	2.0	0.11	13.16	0.01	2.462	0.11	0.76	4.2	94.0	1.8	0.35	0.52	0.52	—	4.1	0.005	1.11	0.0	0.04	14.85	0.00	2.126	15.52	1.33	4.2	95.8	0.0	0.39	1.47	0.64	0.71	—	9144	585	4	0	0	0	4462	logfile
✔	7SK7	25175	2024-02-15	2021-10-19	3.3	3.48	—	3.4	0.004	0.57	0.0	0.05	14.16	0.00	2.002	4.59	0.00	3.6	96.4	0.0	-0.04	0.68	0.80	3.12	3.4	0.003	0.53	0.0	0.04	15.51	0.00	2.127	5.63	1.59	3.5	96.5	0.0	0.12	0.38	0.68	0.81	2.88	13455	854	6	0	2	0	6650	logfile

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