Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SK2	25170	2024-02-13	2021-10-19	3.82	4.03	—	3.9	0.007	1.22	0.0	0.06	13.67	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.83	0.0	0.04	16.19	0.00	2.147	19.11	4.23	4.5	95.5	0.0	-0.35	0.52	0.50	0.70	1.15	4177	532	1	0	1	0	0	logfile
✔	7SK9	25177	2024-02-15	2021-10-19	3.7	4.01	—	3.9	0.005	0.62	0.0	0.05	15.65	0.00	2.028	4.76	0.00	4.4	95.6	0.0	1.15	0.71	0.81	1.92	3.9	0.003	0.50	0.0	0.04	14.26	0.00	2.032	6.17	0.94	5.1	94.9	0.0	1.17	0.41	0.70	0.81	2.17	11261	716	4	0	3	0	5561	logfile
✔	7SK5	25173	2024-02-16	2021-10-19	4.0	4.30	—	4.2	0.004	0.63	0.0	0.06	13.45	0.00	1.998	6.42	0.00	4.7	95.3	0.0	0.50	0.69	0.81	—	4.2	0.019	1.03	0.0	0.04	14.86	0.00	1.976	10.98	1.64	5.0	95.0	0.0	-0.07	0.46	0.69	0.80	—	14160	897	7	0	7	0	6928	logfile
✔	7SK1	25169	2024-02-13	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.006	1.22	1.0	0.05	15.73	0.01	2.256	8.11	2.83	5.4	94.6	0.0	0.21	0.62	0.58	0.73	0.71	4291	524	4	0	7	0	0	logfile
✔	7VQ3	32084	2024-02-13	2021-10-19	3.2	3.40	—	3.4	0.005	0.55	0.0	0.04	14.66	0.00	2.061	5.90	0.00	6.6	93.4	0.0	-0.93	0.65	0.83	2.45	3.4	0.003	0.53	0.0	0.04	16.64	0.00	2.232	7.08	2.87	3.2	96.8	0.0	3.18	0.54	0.64	0.84	1.82	6306	800	2	0	0	0	0	logfile
✔	7VQ7	32087	2024-02-13	2021-10-19	3.6	3.68	—	3.7	0.007	0.75	0.0	0.04	16.81	0.00	2.070	11.39	4.87	3.9	96.1	0.0	-1.30	0.61	0.81	2.00	3.7	0.003	0.58	0.0	0.04	17.91	0.00	2.181	8.16	3.24	2.5	97.5	0.0	3.68	1.25	0.58	0.79	1.19	6127	778	3	0	1	0	0	logfile
✔	7VQ0	32078	2024-02-21	2021-10-18	3.03	3.26	3.14	3.2	0.004	0.59	0.0	0.05	15.23	0.00	2.124	9.20	0.03	4.6	95.3	0.1	-0.40	0.68	0.82	2.50	3.2	0.002	0.55	0.0	0.04	15.18	0.00	2.091	9.16	1.27	4.3	95.6	0.1	-0.25	0.37	0.69	0.85	2.42	29517	3624	35	0	91	0	0	logfile
✔	7SJR	25164	2024-02-15	2021-10-18	3.8	3.91	—	3.8	0.005	0.79	0.0	0.04	17.63	0.01	1.895	13.38	0.08	8.9	91.1	0.0	-1.61	0.77	0.83	1.72	3.8	0.003	0.62	0.0	0.04	18.95	0.00	2.070	8.91	2.50	6.0	94.0	0.0	-0.21	1.12	0.76	0.83	0.77	13696	1713	4	35	3	0	0	logfile
✔	7SJN	25162	2024-02-17	2021-10-18	3.4	3.82	3.28	3.8	0.004	0.65	3.0	0.05	12.76	0.00	2.246	8.28	0.00	3.2	96.8	0.0	-0.44	0.71	0.73	1.67	3.8	0.003	0.56	0.0	0.05	14.59	0.00	2.094	7.70	1.23	6.2	93.8	0.0	-0.50	2.54	0.73	0.77	2.14	19062	1251	9	0	0	0	9483	logfile
✔	7VQ2	32083	2024-02-18	2021-10-18	3.68	4.07	—	3.9	0.009	0.83	0.0	0.05	12.14	0.00	2.297	6.39	1.27	4.8	93.8	1.4	-3.35	0.54	0.36	1.21	4.0	0.003	0.59	0.0	0.04	14.39	0.00	2.032	10.20	1.83	6.0	94.0	0.0	1.18	1.29	0.72	0.63	1.39	23340	1416	4	0	0	0	11764	logfile
✔	7VQ1	32082	2024-02-23	2021-10-18	3.76	4.29	—	3.4	0.010	0.89	0.0	0.05	13.83	0.00	2.087	25.74	0.67	14.4	85.6	0.0	-5.24	0.81	0.83	1.46	3.4	0.003	0.66	0.0	0.04	15.08	0.00	2.147	12.99	1.90	7.0	93.0	0.0	-0.19	0.45	0.81	0.82	0.98	37804	5208	4	0	0	0	0	logfile
✔	7VPZ	32077	2024-02-21	2021-10-18	4.14	4.38	4.16	4.1	0.005	0.79	1.0	0.05	18.74	0.00	1.887	6.54	0.52	3.6	96.3	0.0	-0.02	0.81	0.71	—	4.2	0.004	0.68	0.0	0.04	18.77	0.00	1.925	17.75	0.00	3.5	96.5	0.0	-0.10	0.69	0.83	0.75	—	30593	3474	14	173	9	0	0	logfile
✔	7VPX	32074	2024-02-24	2021-10-18	3.0	3.28	—	3.1	0.009	1.32	28.0	0.17	19.53	0.01	1.018	18.59	7.75	3.5	96.2	0.3	-2.52	0.44	0.36	1.22	3.2	0.006	0.90	0.0	0.06	19.24	0.01	1.983	13.57	4.35	6.6	93.3	0.0	-0.49	1.48	0.59	0.63	1.39	43240	5611	39	319	7	0	0	logfile
✔	7Q12	13752	2024-02-18	2021-10-17	3.7	3.84	3.70	3.7	0.003	0.58	0.0	0.35	17.60	0.00	2.241	9.16	0.00	3.4	96.6	0.0	0.25	0.82	0.79	1.46	3.7	0.003	0.62	0.0	0.04	15.64	0.00	2.223	10.96	1.02	4.1	95.9	0.0	0.00	1.16	0.81	0.79	1.57	20244	2488	12	0	4	0	0	logfile
✔	7Q13	13753	2024-02-18	2021-10-17	3.0	3.14	3.01	3.1	0.004	0.72	0.0	0.35	19.55	0.00	2.208	10.45	1.12	5.4	94.6	0.0	-0.01	0.75	0.75	2.88	3.1	0.003	0.62	0.0	0.04	16.36	0.00	2.113	11.84	1.26	5.4	94.6	0.0	-0.13	0.48	0.79	0.80	2.81	20368	2488	12	4	8	0	0	logfile
✔	7Q0S	13751	2024-02-18	2021-10-16	4.0	4.12	3.99	4.1	0.003	0.63	0.0	0.34	18.14	0.00	2.203	9.20	1.25	2.5	97.5	0.0	0.59	0.80	0.78	—	4.1	0.002	0.59	0.0	0.04	17.06	0.00	2.190	9.59	2.18	2.5	97.5	0.0	0.62	0.66	0.81	0.80	—	21192	2612	12	0	4	0	0	logfile
✔	7SJ7	25156	2024-02-24	2021-10-16	3.8	3.94	—	3.9	0.006	0.66	0.0	0.05	13.53	0.00	1.947	12.68	5.43	4.9	95.0	0.1	-1.01	0.64	0.83	2.32	3.9	0.003	0.71	0.0	0.04	17.06	0.00	1.984	13.05	2.94	3.1	96.9	0.0	0.25	0.75	0.64	0.82	1.92	41056	5184	24	6	12	0	0	logfile
✔	7SJ9	25159	2024-02-24	2021-10-16	3.8	3.88	—	3.5	0.003	0.67	1.0	0.05	13.67	0.01	2.061	14.41	0.13	3.4	96.5	0.0	0.10	0.65	0.84	2.50	3.5	0.005	0.84	4.0	0.05	17.35	0.01	1.893	18.18	3.59	3.2	96.8	0.0	0.46	1.51	0.67	0.86	2.57	43240	5446	26	0	24	0	0	logfile
✔	7SJ8	25157	2024-02-24	2021-10-16	3.6	4.03	—	3.9	0.005	0.60	0.0	0.04	13.42	0.00	1.906	11.93	6.00	4.5	95.4	0.1	-1.01	0.59	0.81	2.37	3.9	0.003	0.78	0.0	0.05	17.51	0.00	1.947	17.13	4.53	3.9	96.0	0.1	-0.32	1.56	0.59	0.83	1.83	41056	5184	24	6	12	0	0	logfile
✔	7SJA	25160	2024-02-24	2021-10-16	3.8	4.18	—	4.1	0.004	0.60	0.0	0.04	13.62	0.00	1.951	13.74	5.93	5.1	94.9	0.1	-0.48	0.66	0.81	1.88	4.1	0.003	0.72	0.0	0.04	17.22	0.00	2.030	15.93	3.93	3.2	96.8	0.0	0.03	0.87	0.67	0.82	1.77	40920	5166	24	0	24	0	0	logfile

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