Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q0K	13746	2024-02-20	2021-10-15	4.0	2.65	—	2.4	0.003	0.64	0.0	0.04	15.70	0.00	1.955	11.67	0.00	5.0	95.0	0.0	-0.99	0.74	0.74	—	2.3	0.004	0.78	0.0	0.04	17.92	0.00	1.973	14.84	3.36	5.9	94.1	0.0	-0.88	2.27	0.75	0.74	—	26317	3184	9	69	3	0	0	logfile
✔	7VoY	32062	2024-02-18	2021-10-15	4.2	3.14	—	3.1	0.009	0.97	0.0	0.10	14.58	0.01	2.056	16.17	1.25	4.6	95.4	0.0	0.99	0.45	0.66	—	3.1	0.006	0.91	0.0	0.05	14.84	0.01	2.044	15.24	0.00	5.4	94.6	0.0	0.33	0.69	0.45	0.68	—	22119	2479	71	0	44	0	0	logfile
✔	7Q0J	13745	2024-02-19	2021-10-15	4.3	5.05	—	4.5	0.004	0.79	0.0	0.05	15.01	0.01	2.083	11.75	0.04	6.7	93.3	0.1	-1.95	0.90	0.85	—	4.5	0.003	0.66	0.0	0.04	15.46	0.00	1.980	15.76	0.00	6.9	93.0	0.1	-1.42	1.17	0.90	0.86	—	26056	3190	9	53	3	0	0	logfile
✔	7SJ1	25152	2024-02-13	2021-10-15	2.9	3.13	—	3.3	0.011	1.01	0.0	0.04	16.62	0.00	2.351	8.63	0.61	2.1	97.9	0.0	2.80	0.58	0.77	3.41	3.3	0.003	0.63	0.0	0.04	16.12	0.00	2.238	9.76	1.52	1.2	98.8	0.0	2.71	1.09	0.51	0.78	2.33	6463	784	9	0	34	1	0	logfile
✔	7VPD	32063	2024-02-21	2021-10-15	3.77	4.04	3.88	3.9	0.005	0.79	0.0	0.05	20.16	0.01	1.979	6.99	0.44	3.6	96.4	0.0	-0.05	0.82	0.73	1.27	3.9	0.003	0.69	0.0	0.04	20.92	0.00	2.015	15.37	3.89	3.0	97.0	0.0	0.29	0.59	0.83	0.75	0.82	30924	3531	14	168	9	0	0	logfile
✔	7SJ4	25153	2024-02-13	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.47	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.59	0.0	0.04	14.69	0.00	2.249	6.04	2.78	2.3	97.7	0.0	1.55	0.62	0.60	0.71	2.67	3909	481	4	0	0	24	0	logfile
✔	7Q0B	13743	2024-02-18	2021-10-14	3.0	3.18	3.08	3.2	0.004	0.54	0.0	0.04	15.11	0.00	2.254	4.77	0.13	3.6	96.4	0.0	0.64	0.81	0.85	3.42	3.2	0.003	0.51	0.0	0.04	17.30	0.00	2.267	5.30	1.60	3.7	96.3	0.0	0.88	0.32	0.82	0.87	2.93	21168	2618	8	0	0	0	0	logfile
✔	7Q0A	13742	2024-02-19	2021-10-14	4.8	5.34	—	4.9	0.003	0.58	0.0	0.05	11.43	0.00	2.216	4.45	0.34	3.9	96.1	0.1	-0.52	0.78	0.63	—	4.8	0.003	0.63	0.0	0.04	11.50	0.00	2.103	15.45	0.04	3.4	96.5	0.1	0.11	0.90	0.83	0.75	—	25125	3193	19	0	49	0	0	logfile
✔	7SiL	25143	2024-02-15	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.55	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.57	0.0	0.04	15.34	0.00	2.184	8.01	1.99	2.9	97.1	0.0	0.56	0.39	0.77	0.78	2.96	12924	1564	8	0	34	0	0	logfile
✔	7SiP	25147	2024-02-13	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	17.47	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.48	0.0	0.04	15.58	0.00	2.226	3.62	1.60	0.6	99.4	0.0	1.37	0.99	0.58	0.82	2.53	7560	892	12	0	36	20	0	logfile
✔	7SiM	25144	2024-02-15	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.38	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.7	0.003	0.55	0.0	0.04	15.06	0.00	2.188	8.41	1.25	1.5	98.5	0.0	0.48	0.93	0.76	0.78	3.12	12826	1564	8	0	28	0	0	logfile
✔	7VoT	32059	2024-02-24	2021-10-14	2.9	3.04	—	3.0	0.006	0.80	0.0	0.04	15.28	0.01	2.147	9.03	0.37	1.5	98.5	0.0	2.64	0.76	0.82	4.12	3.0	0.004	0.72	0.0	0.04	17.90	0.00	2.148	14.30	2.44	1.7	98.3	0.0	2.09	1.18	0.76	0.84	3.42	44984	4594	128	0	152	0	0	logfile
✔	7VoJ	32050	2024-02-13	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.003	0.56	0.0	0.03	16.42	0.00	1.922	5.66	1.59	2.9	97.1	0.0	3.00	2.14	0.61	0.82	1.71	6318	800	4	0	6	0	0	logfile
✔	7Voo	32052	2024-02-17	2021-10-14	3.9	4.07	—	3.9	0.004	0.91	1.0	0.05	19.36	0.01	1.930	21.49	0.29	12.7	86.9	0.4	-2.96	0.61	0.69	1.12	3.9	0.003	0.81	0.0	0.05	16.71	0.01	2.116	20.28	3.37	10.9	88.8	0.3	-2.42	0.53	0.62	0.71	1.09	9686	1245	6	0	12	0	0	logfile
✔	7SiC	25140	2024-02-24	2021-10-13	2.51	2.61	—	2.6	0.003	0.58	0.0	0.04	17.75	0.00	2.151	6.37	3.04	1.8	98.2	0.0	2.29	0.60	0.60	1.51	2.6	0.003	0.55	0.0	0.04	17.76	0.00	2.154	7.46	2.45	1.6	98.4	0.0	2.28	0.59	0.74	0.76	1.83	44484	5546	4	0	4	0	0	logfile
✔	7PZP	13735	2024-02-21	2021-10-13	3.5	3.29	—	3.2	0.007	1.02	0.0	0.07	14.30	0.01	2.128	6.10	0.00	2.0	98.0	0.0	2.29	0.72	0.67	1.53	3.2	0.003	0.64	0.0	0.04	16.19	0.00	2.065	11.81	1.20	2.2	97.8	0.0	2.30	2.69	0.75	0.72	2.01	15602	1978	2	0	0	0	0	logfile
✔	7SiD	25141	2024-02-24	2021-10-13	2.53	2.17	—	2.7	0.003	0.53	0.0	0.04	14.38	0.01	2.072	4.12	0.77	1.7	98.3	0.0	2.49	0.61	0.61	1.83	2.2	0.003	0.57	0.0	0.04	16.59	0.00	2.209	6.22	1.21	2.3	97.7	0.0	1.95	1.98	0.71	0.78	2.05	44650	5566	6	0	4	0	0	logfile
✔	7Vo9	32049	2024-02-13	2021-10-13	3.8	3.98	3.82	3.8	0.011	1.58	1.0	0.09	23.20	0.00	2.124	6.40	0.76	0.8	99.2	0.0	2.89	0.75	0.63	0.88	3.9	0.004	0.68	0.0	0.04	27.11	0.00	1.950	18.06	6.82	0.8	99.2	0.0	1.08	1.14	0.77	0.67	0.54	5711	524	10	86	12	0	0	logfile
✔	7Si7	25139	2024-02-15	2021-10-12	3.49	3.47	—	3.4	0.003	1.32	0.0	0.04	13.13	0.00	1.963	5.23	0.00	2.6	97.4	0.0	2.38	0.49	0.78	0.67	3.4	0.003	0.92	0.0	0.04	15.07	0.00	1.949	5.67	0.83	2.9	97.1	0.0	2.02	1.00	0.51	0.83	1.06	11287	728	1	0	2	0	5777	logfile
✔	7PZD	13727	2024-02-20	2021-10-12	3.6	3.77	—	3.8	0.010	1.24	0.0	0.08	16.79	0.01	2.384	6.88	1.27	5.6	94.4	0.0	-3.73	0.68	0.81	1.20	3.8	0.003	0.62	0.0	0.03	18.77	0.01	2.254	7.79	1.34	4.2	95.8	0.0	1.29	1.68	0.67	0.81	0.44	13644	1656	18	0	0	0	0	logfile

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