Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PZD	13727	2024-02-20	2021-10-12	3.6	3.77	—	3.8	0.010	1.24	0.0	0.08	16.79	0.01	2.384	6.88	1.27	5.6	94.4	0.0	-3.73	0.68	0.81	1.20	3.8	0.003	0.62	0.0	0.03	18.77	0.01	2.254	7.79	1.34	4.2	95.8	0.0	1.29	1.68	0.67	0.81	0.44	13644	1656	18	0	0	0	0	logfile
✔	7Si3	25137	2024-02-15	2021-10-12	3.19	3.21	—	3.2	0.003	1.19	0.0	0.04	13.00	0.00	2.038	2.15	0.00	1.5	98.5	0.0	3.72	0.48	0.77	1.74	3.1	0.003	0.86	0.0	0.04	14.43	0.00	1.918	4.07	0.55	2.6	97.4	0.0	2.03	0.94	0.51	0.82	2.32	13500	873	1	0	2	0	6901	logfile
✔	7Vo0	32048	2024-02-13	2021-10-12	3.4	3.66	3.41	3.5	0.004	0.57	0.0	0.04	21.17	0.00	1.938	7.44	0.17	1.8	98.2	0.0	0.39	0.73	0.66	1.10	3.5	0.006	0.64	0.0	0.04	23.11	0.00	1.855	12.29	3.57	2.8	97.2	0.0	0.95	1.38	0.84	0.83	1.45	7661	786	14	86	18	0	0	logfile
✔	7VNY	32047	2024-02-18	2021-10-12	2.79	2.20	—	2.6	0.020	3.95	0.0	0.04	19.17	0.01	2.042	10.90	0.68	2.0	98.0	0.0	1.66	0.47	0.75	4.24	2.6	0.003	0.97	0.0	0.04	18.08	0.00	2.084	8.41	2.10	1.6	98.4	0.0	2.48	1.12	0.60	0.84	3.62	22472	2283	64	0	76	0	0	logfile
✔	7SHS	25135	2024-02-13	2021-10-11	4.1	3.40	—	4.3	0.003	0.74	0.0	0.04	13.65	0.01	2.349	5.95	0.00	1.8	98.2	0.0	0.74	0.60	0.71	—	4.1	0.002	0.59	0.0	0.04	14.46	0.00	2.249	10.70	0.14	2.1	97.9	0.0	2.39	1.87	0.61	0.74	—	6873	849	3	0	0	0	0	logfile
✔	7VNQ	32045	2024-02-16	2021-10-11	2.96	3.80	—	3.5	0.010	1.02	0.0	0.06	15.83	0.01	2.207	12.52	6.90	5.7	93.9	0.4	-1.00	0.50	0.45	1.23	3.5	0.007	1.00	0.0	0.05	17.82	0.01	2.107	24.41	2.46	5.5	94.4	0.2	0.63	1.80	0.59	0.79	1.50	15507	1920	12	0	7	0	0	logfile
✔	7VNN	32043	2024-02-23	2021-10-11	2.64	2.64	—	2.8	0.003	0.54	0.0	0.04	13.91	0.00	2.169	6.33	0.37	5.7	94.3	0.0	-0.92	0.78	0.82	3.39	2.8	0.004	0.59	0.0	0.05	16.06	0.00	2.159	7.66	2.31	6.4	93.6	0.0	-0.53	0.94	0.79	0.84	3.27	38823	4863	15	0	21	0	0	logfile
✔	7VNJ	32041	2024-02-21	2021-10-11	2.56	2.25	—	2.5	0.003	0.52	0.0	0.04	13.80	0.00	2.166	5.63	0.40	5.0	95.0	0.0	-0.46	0.69	0.78	3.16	2.3	0.002	0.54	0.0	0.04	15.95	0.00	2.120	6.39	1.15	5.0	95.0	0.0	0.13	0.55	0.78	0.87	3.94	30661	3856	15	0	21	0	0	logfile
✔	7VNM	32042	2024-02-18	2021-10-11	2.86	2.50	—	2.7	0.021	1.93	0.0	0.04	16.87	0.05	2.100	8.50	0.34	1.5	98.5	0.0	2.54	0.63	0.86	4.06	2.6	0.003	0.68	0.0	0.04	17.18	0.00	2.096	7.18	2.10	1.5	98.5	0.0	2.83	0.93	0.62	0.88	3.97	20588	2112	55	0	65	0	0	logfile
✔	7VNR	32046	2024-02-16	2021-10-11	2.8	3.48	—	3.3	0.011	1.01	2.0	0.07	16.11	0.01	2.217	11.25	5.60	6.4	93.4	0.2	-1.01	0.50	0.53	2.33	3.2	0.004	1.03	0.0	0.04	17.30	0.00	2.156	18.23	1.68	5.4	94.5	0.2	0.57	2.46	0.56	0.80	1.49	15343	1896	12	0	7	0	0	logfile
✔	7VNE	32040	2024-02-22	2021-10-10	3.5	3.54	—	3.5	0.011	0.90	0.0	0.06	17.64	0.00	2.083	11.40	0.00	10.0	90.0	0.0	-2.70	0.62	0.68	2.50	3.5	0.004	0.70	0.0	0.05	16.47	0.00	2.153	9.14	1.78	8.4	91.6	0.0	-1.77	1.08	0.67	0.80	2.18	28715	3558	31	0	67	0	0	logfile
✔	7VNC	32038	2024-02-21	2021-10-10	3.7	3.77	—	3.7	0.009	0.77	0.0	0.05	18.01	0.00	2.149	9.92	0.00	6.4	93.6	0.0	-2.21	0.64	0.71	1.93	3.7	0.004	0.69	0.0	0.05	16.24	0.00	2.165	11.61	2.45	8.1	91.9	0.0	-1.77	0.56	0.69	0.80	1.81	26716	3325	22	0	51	0	0	logfile
✔	7VND	32039	2024-02-21	2021-10-10	3.6	3.59	—	3.5	0.009	0.75	0.0	0.05	18.08	0.00	2.170	9.07	0.00	8.1	91.9	0.0	-2.53	0.64	0.73	2.08	3.5	0.004	0.69	0.0	0.05	16.07	0.00	2.135	9.85	2.20	8.5	91.5	0.0	-1.93	0.45	0.68	0.81	1.80	27632	3442	24	0	52	0	0	logfile
✔	7PYJ	13717	2024-02-21	2021-10-10	4.2	5.28	—	4.4	0.003	0.68	0.0	0.05	15.23	0.00	2.087	11.88	0.04	6.7	93.3	0.1	-1.32	0.90	0.85	—	4.4	0.003	0.61	0.0	0.04	15.55	0.00	2.005	16.10	0.00	6.6	93.3	0.0	-0.59	0.41	0.90	0.85	—	29362	3787	10	68	3	0	0	logfile
✔	7PYK	13718	2024-02-21	2021-10-10	4.1	5.03	—	4.4	0.004	0.77	0.0	0.05	15.73	0.01	1.512	12.77	0.04	6.7	93.3	0.0	-1.75	0.89	0.85	—	4.4	0.005	0.69	0.0	0.04	15.67	0.00	1.971	20.19	0.00	8.0	92.0	0.0	-1.20	0.39	0.89	0.85	—	29342	3787	10	67	3	0	0	logfile
✔	7PY7	13715	2024-02-21	2021-10-09	4.1	4.76	—	4.5	0.003	0.65	0.0	0.04	15.46	0.00	2.097	10.86	0.04	5.7	94.2	0.1	-1.49	0.86	0.83	—	4.5	0.003	0.61	0.0	0.04	15.82	0.00	2.104	13.22	0.07	5.9	94.1	0.1	-0.88	0.41	0.86	0.84	—	30000	3832	11	69	3	0	0	logfile
✔	7PY8	13716	2024-02-20	2021-10-09	3.8	2.61	—	3.2	0.002	0.52	0.0	0.04	15.67	0.00	2.163	7.98	0.04	4.4	95.6	0.0	-0.59	0.73	0.74	1.28	2.2	0.004	0.72	1.0	0.04	18.06	0.00	2.050	13.12	3.26	5.3	94.7	0.0	-0.55	1.31	0.76	0.75	1.38	27442	3307	10	75	3	0	0	logfile
✔	7SHK	25127	2024-02-14	2021-10-09	3.1	3.83	—	3.7	0.005	0.82	4.0	0.05	14.18	0.01	2.199	12.41	0.25	4.0	96.0	0.0	-0.23	0.82	0.76	1.56	3.6	0.003	0.70	0.0	0.04	15.93	0.00	2.174	12.41	1.70	2.8	97.1	0.1	0.34	0.56	0.81	0.77	1.24	10485	1299	7	0	4	0	0	logfile
✔	7VMS	32037	2024-02-17	2021-10-09	3.8	3.43	—	3.3	0.003	0.64	0.0	0.04	13.33	0.00	2.073	13.12	0.20	6.2	93.8	0.0	-2.49	0.62	0.69	0.68	3.3	0.003	0.64	0.0	0.04	15.83	0.00	2.098	12.82	2.93	7.9	92.1	0.0	-0.93	1.46	0.62	0.70	0.69	123552	13608	12	0	3004	0	0	logfile
✔	7VMR	32036	2024-02-17	2021-10-09	3.3	2.92	—	3.1	0.003	0.66	8.0	0.04	14.56	0.00	2.099	10.88	1.87	6.4	93.6	0.0	-0.66	0.63	0.70	1.34	2.9	0.005	0.77	1.0	0.04	16.13	0.01	2.042	14.41	2.88	8.8	91.2	0.0	-1.06	0.52	0.65	0.76	1.64	123548	13608	12	0	3000	0	0	logfile

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