Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SHK	25127	2024-02-14	2021-10-09	3.1	3.83	—	3.7	0.005	0.82	4.0	0.05	14.18	0.01	2.199	12.41	0.25	4.0	96.0	0.0	-0.23	0.82	0.76	1.56	3.6	0.003	0.70	0.0	0.04	15.93	0.00	2.174	12.41	1.70	2.8	97.1	0.1	0.34	0.56	0.81	0.77	1.24	10485	1299	7	0	4	0	0	logfile
✔	7VMS	32037	2024-02-17	2021-10-09	3.8	3.43	—	3.3	0.003	0.64	0.0	0.04	13.33	0.00	2.073	13.12	0.20	6.2	93.8	0.0	-2.49	0.62	0.69	0.68	3.3	0.003	0.64	0.0	0.04	15.83	0.00	2.098	12.82	2.93	7.9	92.1	0.0	-0.93	1.46	0.62	0.70	0.69	123552	13608	12	0	3004	0	0	logfile
✔	7VML	33935	2024-02-17	2021-10-09	3.3	3.44	3.36	3.4	0.002	0.51	0.0	0.04	13.79	0.00	2.158	8.25	1.39	6.1	93.9	0.0	-2.64	0.70	0.77	1.66	3.4	0.003	0.61	0.0	0.04	15.84	0.00	2.160	11.12	3.06	6.9	93.1	0.0	-0.94	1.90	0.71	0.79	1.73	123564	13608	12	0	3000	0	0	logfile
✔	7SHM	25130	2024-02-14	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.73	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.65	0.0	0.04	16.95	0.00	2.169	9.00	2.08	3.8	96.2	0.0	0.19	0.61	0.62	0.84	2.50	9186	1142	4	0	2	0	0	logfile
✔	7SHL	25128	2024-02-14	2021-10-09	3.5	3.40	—	2.9	0.003	0.65	0.0	0.04	14.14	0.00	2.087	15.79	0.00	3.9	96.1	0.0	0.05	0.83	0.78	1.51	2.9	0.003	0.74	0.0	0.04	16.25	0.00	2.076	19.04	1.63	4.3	95.7	0.0	0.22	0.47	0.83	0.78	1.39	9207	1138	6	0	1	0	0	logfile
✔	7PY2	13708	2024-02-13	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.007	0.93	0.0	0.05	17.99	0.00	2.349	2.69	8.50	5.2	94.8	0.0	-3.95	1.39	0.49	0.88	6.22	2152	316	4	0	0	0	0	logfile
✔	7PXA	13695	2024-02-24	2021-10-08	2.8	2.56	—	2.8	0.002	0.42	0.0	0.04	9.39	0.00	2.147	3.67	1.14	1.5	98.5	0.0	2.60	0.76	0.84	2.86	2.8	0.004	0.59	0.0	0.04	15.18	0.00	2.077	5.39	2.84	2.3	97.7	0.0	2.16	1.44	0.77	0.87	2.78	46614	6187	35	0	0	0	0	logfile
✔	7PY4	13711	2024-02-15	2021-10-08	3.1	3.52	3.18	3.5	0.004	0.59	0.0	0.05	14.52	0.00	1.650	4.90	0.08	3.1	96.9	0.0	0.83	0.65	0.82	3.46	3.5	0.003	0.54	0.0	0.04	14.99	0.00	2.011	5.50	1.42	3.2	96.8	0.0	1.04	0.74	0.66	0.85	2.49	11835	1439	5	0	11	0	0	logfile
✔	7PY1	13707	2024-02-20	2021-10-08	3.8	2.55	—	2.2	0.002	0.56	0.0	0.04	16.56	0.00	2.154	8.07	0.04	4.8	95.2	0.1	-0.59	0.75	0.75	1.14	2.2	0.004	0.66	0.0	0.04	18.47	0.00	1.941	10.64	3.09	6.1	93.9	0.1	-0.59	0.54	0.76	0.75	1.10	27442	3307	10	75	3	0	0	logfile
✔	7PY0	13706	2024-02-20	2021-10-08	4.5	2.93	—	4.1	0.003	0.67	0.0	0.04	15.68	0.00	2.116	9.80	0.04	4.6	95.4	0.0	-0.78	0.73	0.74	—	2.0	0.003	0.75	0.0	0.04	16.05	0.00	1.897	18.20	0.07	5.8	94.2	0.0	-0.86	1.86	0.75	0.75	—	27442	3307	10	75	3	0	0	logfile
✔	7PXH	13703	2024-02-20	2021-10-08	2.59	3.11	2.60	3.0	0.006	0.79	0.0	0.04	14.20	0.00	2.079	4.27	0.45	1.8	98.2	0.0	0.70	0.77	0.87	3.60	3.0	0.002	0.45	0.0	0.04	15.05	0.00	1.974	5.12	1.42	1.9	98.1	0.0	1.31	0.40	0.77	0.89	3.58	28922	3540	8	0	39	0	0	logfile
✔	7PY3	13709	2024-02-21	2021-10-08	3.8	4.31	—	4.2	0.003	0.67	0.0	0.05	15.99	0.00	2.060	8.35	0.04	6.4	93.6	0.0	-1.94	0.78	0.78	1.22	4.2	0.003	0.61	0.0	0.04	17.59	0.00	1.996	12.11	2.82	7.0	93.0	0.0	-1.21	0.38	0.78	0.79	1.15	29362	3787	10	68	3	0	0	logfile
✔	7PX9	13694	2024-02-18	2021-10-08	3.8	3.50	—	3.3	0.003	0.68	0.0	0.04	11.06	0.00	2.005	9.15	1.89	3.7	96.2	0.1	1.46	0.76	0.76	1.49	3.3	0.003	0.59	0.0	0.04	14.56	0.00	2.012	11.36	2.01	4.2	95.8	0.0	0.58	1.34	0.76	0.78	1.55	22194	2817	13	0	11	0	0	logfile
✔	7PXB	13696	2024-02-18	2021-10-08	4.0	3.59	—	3.4	0.004	0.73	0.0	0.04	11.58	0.00	2.022	8.96	2.05	3.6	96.4	0.0	1.14	0.77	0.74	—	3.4	0.004	0.66	0.0	0.04	14.84	0.00	1.844	14.15	2.93	5.4	94.6	0.0	0.10	1.39	0.78	0.77	—	22286	2828	13	0	12	0	0	logfile
✔	7PXC	13697	2024-02-17	2021-10-08	3.84	2.58	—	2.8	0.006	0.91	0.0	0.05	13.70	0.00	1.952	7.45	3.95	3.7	96.2	0.1	-0.84	0.70	0.70	2.11	2.8	0.003	0.61	1.0	0.04	15.21	0.00	1.911	7.72	2.47	2.5	97.5	0.0	1.82	0.73	0.73	0.73	2.42	68808	9004	42	0	11	0	0	logfile
✔	7PXD	13698	2024-02-17	2021-10-08	4.0	2.58	—	2.8	0.006	0.93	0.0	0.05	14.20	0.01	2.068	8.55	3.29	4.0	95.9	0.1	-1.07	0.68	0.67	—	2.8	0.003	0.57	0.0	0.04	15.45	0.00	1.976	7.08	1.36	2.4	97.6	0.0	1.79	0.77	0.71	0.71	—	68900	9015	42	0	12	0	0	logfile
✔	7PXE	13700	2024-02-20	2021-10-08	2.38	2.90	2.41	2.7	0.005	0.73	0.0	0.04	16.77	0.00	2.151	5.31	1.94	1.0	99.0	0.0	1.17	0.79	0.87	3.74	2.7	0.002	0.45	0.0	0.04	15.78	0.00	2.194	4.91	1.94	1.4	98.6	0.0	1.72	0.32	0.79	0.89	4.38	28928	3540	12	0	36	136	0	logfile
✔	7PXF	13701	2024-02-20	2021-10-08	2.68	2.75	2.73	2.9	0.002	0.45	0.0	0.04	12.99	0.00	2.188	5.55	0.65	2.1	97.9	0.0	-0.25	0.66	0.85	3.21	2.9	0.002	0.52	0.0	0.04	15.68	0.00	2.138	6.73	1.91	2.0	98.0	0.0	0.68	0.49	0.66	0.87	3.56	28099	3540	8	0	7	0	0	logfile
✔	7PX8	13691	2024-02-18	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.52	0.0	0.04	13.57	0.00	2.210	3.72	0.95	2.6	97.4	0.0	-0.04	0.19	0.79	0.88	3.44	21409	2798	4	0	0	0	0	logfile
✔	7SGR	25116	2024-02-22	2021-10-07	2.9	3.27	—	3.2	0.007	0.79	0.0	0.04	15.21	0.01	2.202	6.45	0.00	4.7	95.3	0.0	0.89	0.65	0.78	2.32	3.2	0.003	0.52	0.0	0.04	16.32	0.00	2.155	6.01	1.72	4.1	95.9	0.0	1.49	1.53	0.66	0.81	2.30	34989	4397	21	0	37	0	0	logfile

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