Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SGZ	25121	2024-02-18	2021-10-07	3.17	3.52	—	3.5	0.002	0.53	0.0	0.04	15.38	0.00	2.128	7.19	0.04	5.5	94.5	0.0	0.10	0.68	0.74	1.35	3.5	0.003	0.57	0.0	0.04	17.17	0.00	1.952	11.82	2.20	5.9	94.1	0.0	0.07	0.53	0.68	0.79	1.90	21055	2558	15	23	10	0	0	logfile
✔	7PX3	13690	2024-02-16	2021-10-07	3.05	3.64	—	3.3	0.003	0.52	0.0	0.04	11.55	0.00	2.241	7.26	5.20	2.4	97.6	0.0	1.05	0.90	0.88	2.96	3.3	0.002	0.59	0.0	0.04	13.66	0.00	2.176	9.63	2.57	2.9	97.0	0.0	1.18	1.87	0.90	0.89	2.53	16430	2041	3	0	0	0	0	logfile
✔	7PW5	13675	2024-02-18	2021-10-06	3.4	4.18	—	3.8	0.005	0.83	0.0	0.15	13.92	0.01	2.030	4.42	0.20	3.0	96.9	0.1	1.32	0.79	0.69	0.75	3.8	0.002	0.56	0.0	0.04	14.85	0.00	2.000	6.33	1.51	2.7	97.3	0.0	1.53	1.07	0.84	0.81	1.40	21548	2761	5	0	199	0	0	logfile
✔	7PW6	13676	2024-02-14	2021-10-06	3.05	3.19	—	3.1	0.003	0.65	0.0	0.21	15.20	0.00	2.146	4.29	0.10	2.9	97.1	0.0	1.97	0.79	0.83	3.07	3.1	0.003	0.49	0.0	0.04	16.05	0.00	2.129	3.34	1.76	2.8	97.2	0.0	2.04	0.91	0.82	0.86	3.11	10393	1342	1	0	76	0	0	logfile
✔	7PW8	13678	2024-02-17	2021-10-06	2.82	2.88	—	2.9	0.005	0.75	4.0	0.16	14.19	0.00	2.086	3.97	0.18	3.4	96.6	0.0	1.21	0.74	0.85	2.97	2.9	0.003	0.51	0.0	0.04	15.55	0.00	1.992	3.39	1.88	2.7	97.3	0.0	1.57	0.43	0.74	0.89	3.11	18960	2434	5	0	199	0	0	logfile
✔	7PW7	13677	2024-02-16	2021-10-06	3.59	3.77	—	3.7	0.003	0.63	0.0	0.17	14.72	0.00	2.020	5.39	0.00	2.9	97.1	0.0	1.95	0.76	0.76	0.92	3.6	0.002	0.51	0.0	0.04	14.84	0.00	1.903	5.33	1.86	3.1	96.9	0.0	1.98	0.92	0.77	0.78	0.89	16227	2056	4	0	199	0	0	logfile
✔	7SGL	25113	2024-02-24	2021-10-06	3.0	3.26	3.00	2.9	0.006	0.59	2.0	0.11	13.50	0.00	1.886	5.89	1.24	2.5	97.5	0.0	-1.62	0.82	0.78	2.24	3.0	0.002	0.58	0.0	0.04	14.95	0.00	1.966	7.08	1.14	3.0	97.0	0.0	0.76	1.51	0.86	0.87	2.30	44704	5396	9	62	6	0	0	logfile
✔	7PW9	13679	2024-02-16	2021-10-06	3.12	3.26	—	3.2	0.004	0.67	0.0	0.16	15.15	0.00	2.021	5.77	0.07	3.3	96.6	0.0	1.77	0.73	0.79	1.98	3.3	0.002	0.50	0.0	0.04	15.14	0.00	1.966	4.46	1.15	2.5	97.5	0.0	2.24	0.90	0.74	0.83	2.19	16339	2066	4	0	199	0	0	logfile
✔	7PWF	13680	2024-02-14	2021-10-06	2.85	2.33	—	2.5	0.007	0.98	0.0	0.07	23.74	0.03	1.748	7.23	0.09	5.3	94.5	0.2	-2.09	0.68	0.81	3.26	2.5	0.003	0.86	0.0	0.04	23.76	0.01	1.940	6.62	3.90	4.9	95.0	0.1	-1.22	0.91	0.68	0.81	2.83	60466	3965	45	1355	303	0	0	logfile
✔	7PWG	13681	2024-02-13	2021-10-06	2.75	2.35	—	2.5	0.010	1.07	0.0	0.06	23.63	0.02	1.376	3.78	6.08	4.4	95.6	0.0	-2.19	0.76	0.88	4.64	2.5	0.004	0.79	0.0	0.04	23.58	0.01	1.754	4.32	4.20	3.4	96.6	0.0	-0.38	0.27	0.77	0.88	3.98	109151	5769	105	2722	294	4397	0	logfile
✔	7VLS	32025	2024-02-14	2021-10-05	3.3	3.54	3.30	3.5	0.004	0.62	0.0	0.04	13.16	0.00	1.926	2.53	1.46	2.6	97.4	0.0	-0.24	0.69	0.84	2.33	3.5	0.003	0.56	0.0	0.04	15.95	0.00	1.998	5.84	2.61	1.6	98.4	0.0	2.68	1.49	0.60	0.79	1.69	9003	1141	1	0	6	0	0	logfile
✔	7VLT	32026	2024-02-14	2021-10-05	3.1	3.37	3.11	3.4	0.004	0.60	0.0	0.04	13.02	0.00	1.963	3.24	2.19	1.9	98.1	0.0	0.12	0.67	0.83	2.64	3.4	0.003	0.57	0.0	0.04	15.37	0.00	1.951	6.87	1.25	1.2	98.8	0.0	2.66	1.86	0.66	0.83	2.17	9024	1145	1	0	6	0	0	logfile
✔	7VLU	32027	2024-02-14	2021-10-05	3.3	3.71	3.36	3.6	0.004	0.63	0.0	0.04	13.04	0.00	1.978	3.76	1.96	2.5	97.5	0.0	-0.35	0.71	0.84	2.31	3.6	0.003	0.56	0.0	0.04	14.68	0.00	1.954	6.80	2.06	1.7	98.3	0.0	2.58	1.91	0.62	0.80	1.43	9110	1159	1	0	6	0	0	logfile
✔	7SGD	25107	2024-02-14	2021-10-05	3.97	4.40	3.79	4.1	0.024	1.80	3.0	0.17	14.41	0.01	2.477	1.47	0.00	1.8	98.2	0.0	0.20	0.84	0.81	2.57	4.1	0.004	0.91	0.0	0.05	15.02	0.00	2.277	15.34	3.84	4.9	95.1	0.0	0.42	1.50	0.85	0.83	2.03	9120	1014	39	0	75	0	0	logfile
✔	7VLY	32031	2024-02-15	2021-10-05	2.45	2.52	—	2.5	0.002	0.61	0.0	0.04	17.02	0.01	2.232	6.18	2.49	4.0	96.0	0.0	1.19	0.72	0.85	2.83	2.5	0.003	0.61	0.0	0.04	16.30	0.01	2.252	5.81	2.27	5.1	94.9	0.0	1.64	0.90	0.73	0.88	2.70	13347	1773	18	0	3	30	0	logfile
✔	7VLX	32030	2024-02-15	2021-10-05	3.12	3.24	—	3.1	0.003	0.70	0.0	0.04	13.74	0.01	2.134	12.56	0.00	6.9	92.9	0.2	-0.42	0.78	0.81	2.46	3.1	0.003	0.69	0.0	0.04	15.53	0.00	2.223	13.55	1.27	7.4	92.5	0.1	-0.08	1.18	0.78	0.82	2.02	12303	1635	9	0	3	0	0	logfile
✔	7SGF	25109	2024-02-15	2021-10-05	4.41	4.60	4.16	4.4	0.022	2.04	0.0	0.15	17.98	0.01	2.354	1.42	0.00	1.9	98.1	0.0	-0.03	0.77	0.70	—	4.4	0.005	0.96	0.0	0.05	12.67	0.00	2.124	22.60	0.00	8.7	91.3	0.0	-1.80	1.03	0.79	0.74	—	12078	1641	42	0	87	0	0	logfile
✔	7SG7	25106	2024-02-23	2021-10-05	2.83	3.42	—	3.2	0.004	0.65	0.0	0.05	14.50	0.00	2.092	4.54	0.69	9.1	90.9	0.0	-2.02	0.64	0.89	3.69	3.2	0.003	0.64	0.0	0.05	16.31	0.00	2.145	6.00	1.48	9.1	90.9	0.0	-1.99	1.17	0.63	0.89	3.13	38802	4974	24	0	0	0	0	logfile
✔	7VLR	32024	2024-02-14	2021-10-05	3.4	3.65	3.41	3.6	0.004	0.61	0.0	0.04	12.84	0.00	2.052	4.29	0.94	1.6	98.4	0.0	1.47	0.70	0.84	1.66	3.6	0.003	0.54	0.0	0.04	15.55	0.00	2.024	7.21	2.61	1.2	98.8	0.0	3.02	1.52	0.65	0.84	1.41	9003	1145	1	0	5	0	0	logfile
✔	7SG4	25105	2024-02-20	2021-10-04	3.43	4.18	—	3.5	0.014	1.91	30.0	0.12	13.18	0.02	2.531	0.22	2.01	9.5	88.9	1.6	-2.14	0.84	0.82	2.83	3.5	0.005	0.74	0.0	0.05	13.53	0.00	2.031	10.62	1.40	9.0	90.8	0.2	-0.89	1.22	0.85	0.82	2.03	28709	3737	8	0	47	0	0	logfile

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