Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SFJ	25079	2024-02-13	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.49	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.46	0.0	0.04	17.54	0.00	2.271	5.09	2.14	3.4	96.6	0.0	2.47	0.47	0.57	0.76	2.96	7377	852	9	0	24	3	0	logfile
✔	7SFR	25100	2024-02-22	2021-10-04	2.6	3.25	2.54	2.3	0.006	0.59	0.0	0.04	23.57	0.01	1.286	9.92	2.44	6.0	93.8	0.2	-0.01	0.86	0.84	2.76	2.3	0.005	0.59	0.0	0.03	23.13	0.01	1.160	10.27	3.42	6.2	93.7	0.1	0.08	0.29	0.87	0.86	2.69	143665	5261	66	4752	454	0	0	logfile
✔	7SFK	25091	2024-02-13	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.40	0.01	2.265	3.61	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.003	0.47	0.0	0.04	17.19	0.01	2.158	5.38	0.14	3.0	97.0	0.0	1.07	0.34	0.68	0.84	3.99	7419	852	9	0	24	57	0	logfile
✔	7VLK	32023	2024-02-20	2021-10-04	2.27	2.77	—	2.6	0.002	0.50	0.0	0.04	17.01	0.00	2.195	6.32	2.51	2.0	98.0	0.0	1.38	0.76	0.84	3.20	2.6	0.003	0.55	0.0	0.04	17.10	0.00	2.189	6.46	2.00	2.6	97.4	0.0	1.55	0.26	0.77	0.86	3.24	28774	3698	12	0	0	0	0	logfile
✔	7SFW	25104	2024-02-23	2021-10-04	3.2	3.27	3.18	3.3	0.004	0.62	0.0	0.05	14.96	0.01	2.133	10.14	0.05	4.4	95.6	0.0	-0.35	0.68	0.85	3.24	3.3	0.003	0.62	0.0	0.04	15.83	0.00	2.054	10.90	2.36	4.6	95.4	0.0	-0.50	1.49	0.66	0.86	2.89	38620	4984	28	0	12	0	0	logfile
✔	7SFS	25101	2024-02-18	2021-10-04	2.76	3.40	—	3.2	0.007	0.80	0.0	0.05	13.87	0.01	2.029	10.20	0.03	11.0	87.9	1.1	-1.55	0.56	0.86	2.89	3.2	0.003	0.69	0.0	0.04	15.57	0.00	2.142	8.01	1.67	10.7	88.4	0.9	-0.75	1.19	0.55	0.86	2.50	73221	9272	24	0	0	0	0	logfile
✔	7SFL	25092	2024-02-15	2021-10-04	3.87	4.10	3.88	4.0	0.004	0.73	0.0	0.04	13.51	0.00	2.145	15.16	0.07	6.2	93.8	0.0	-0.26	0.66	0.76	1.54	4.0	0.004	0.96	1.0	0.04	15.91	0.00	2.074	18.39	2.79	5.8	94.2	0.0	-0.12	0.51	0.67	0.76	0.79	13014	1659	4	0	2	0	0	logfile
✔	7SF8	25077	2024-02-13	2021-10-03	2.7	2.25	—	2.1	0.005	0.74	0.0	0.05	13.03	0.00	2.270	4.24	0.14	4.7	95.3	0.0	0.40	0.80	0.80	3.25	2.1	0.004	0.57	0.0	0.04	15.71	0.00	2.158	4.77	2.50	4.7	95.3	0.0	1.05	1.00	0.82	0.84	3.44	6661	860	4	0	0	0	0	logfile
✔	7SF7	25076	2024-02-13	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.2	0.003	0.61	0.0	0.04	15.71	0.00	2.167	7.39	3.10	8.6	91.4	0.0	-1.17	0.49	0.77	0.78	1.53	6776	879	5	0	0	3	0	logfile
✔	7PVD	13667	2024-02-14	2021-10-02	3.7	3.80	2.77	3.7	0.007	0.83	0.0	0.05	18.68	0.00	2.134	13.11	0.32	3.9	96.1	0.0	-1.16	0.69	0.67	1.54	3.7	0.004	0.76	0.0	0.04	16.07	0.00	2.121	15.35	2.57	5.2	94.8	0.0	-0.25	0.87	0.73	0.74	1.48	8902	1035	22	0	43	0	0	logfile
✔	7VL8	32020	2024-02-14	2021-10-02	2.9	3.53	—	3.5	0.008	0.93	0.0	0.07	12.53	0.00	2.289	5.92	0.00	3.2	96.8	0.0	-1.45	0.56	0.71	1.61	3.5	0.003	0.60	0.0	0.04	15.46	0.00	2.171	7.86	3.41	2.1	97.9	0.0	0.42	1.24	0.47	0.64	1.40	8834	1132	6	0	1	0	0	logfile
✔	7VLA	32022	2024-02-14	2021-10-02	2.7	2.79	—	2.8	0.006	0.87	0.0	0.06	12.46	0.01	1.634	9.80	0.09	2.4	97.6	0.0	1.07	0.67	0.79	3.93	2.8	0.002	0.56	0.0	0.04	15.05	0.00	2.127	6.07	1.70	2.1	97.9	0.0	1.40	0.48	0.68	0.83	3.28	9675	1222	7	0	1	0	0	logfile
✔	7VL9	32021	2024-02-14	2021-10-02	2.6	2.71	—	2.8	0.007	0.96	2.0	0.06	13.15	0.01	2.176	8.25	0.10	2.9	97.1	0.0	0.32	0.68	0.79	4.33	2.7	0.003	0.54	0.0	0.04	16.02	0.00	2.179	5.90	2.29	2.7	97.3	0.0	1.41	0.53	0.67	0.81	3.49	9605	1214	7	0	1	0	0	logfile
✔	7PV4	13665	2024-02-19	2021-10-01	2.8	2.92	—	3.1	0.013	1.96	12.0	0.12	13.22	0.02	2.051	4.50	1.40	1.2	98.4	0.4	-0.63	0.59	0.61	0.70	2.9	0.002	0.59	0.0	0.04	17.11	0.00	2.245	4.98	1.82	2.5	97.5	0.0	1.79	0.74	0.74	0.87	2.61	24336	3072	12	0	0	0	0	logfile
✔	7PV2	13664	2024-02-19	2021-10-01	3.2	3.39	—	3.3	0.011	0.71	0.0	0.08	14.85	0.00	1.971	4.86	0.00	3.9	96.1	0.0	-3.84	0.75	0.82	3.34	3.4	0.003	0.58	0.0	0.04	16.70	0.00	2.155	5.71	1.48	3.2	96.8	0.0	0.02	0.58	0.74	0.86	2.80	25440	3084	12	0	0	0	0	logfile
✔	7VKU	32019	2024-02-14	2021-10-01	3.2	3.40	—	3.3	0.013	1.24	5.0	0.08	16.10	0.01	1.611	10.48	2.23	10.1	89.2	0.7	-5.75	0.76	0.83	2.96	3.3	0.004	0.70	0.0	0.04	16.99	0.00	2.104	9.78	2.71	9.1	90.7	0.2	-1.62	0.55	0.73	0.86	2.76	9219	1154	4	0	0	0	0	logfile
✔	7PUY	13662	2024-02-14	2021-10-01	3.3	3.42	2.55	3.3	0.006	0.74	0.0	0.05	17.93	0.00	2.067	13.87	1.90	3.0	97.0	0.0	-0.75	0.70	0.68	1.46	3.3	0.003	0.70	0.0	0.04	15.15	0.00	2.096	13.92	1.72	3.6	96.4	0.0	-0.22	0.69	0.73	0.74	1.44	10395	1224	24	0	42	0	0	logfile
✔	7SEP	25074	2024-02-13	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.9	0.004	0.68	0.0	0.05	16.57	0.01	2.155	14.46	5.60	4.4	95.6	0.0	0.05	0.84	0.72	0.72	2.25	7641	930	2	0	0	0	0	logfile
✔	7SEF	25067	2024-02-17	2021-09-30	3.55	4.41	3.51	3.5	0.005	0.67	0.0	0.04	10.54	0.00	2.266	3.73	0.00	6.2	93.8	0.0	-2.07	0.90	0.85	1.80	3.6	0.003	0.68	0.0	0.04	11.92	0.00	2.245	11.37	1.21	4.7	95.3	0.0	-1.06	2.68	0.91	0.88	2.84	17154	2256	6	0	0	0	0	logfile
✔	7SD0	25044	2024-02-16	2021-09-29	2.95	3.72	2.97	3.5	0.007	0.97	3.0	0.07	13.55	0.00	1.813	11.57	0.91	5.3	94.7	0.0	-2.03	0.79	0.74	1.81	3.5	0.004	0.69	0.0	0.04	15.66	0.00	1.892	13.37	1.59	5.4	94.6	0.0	-1.64	0.98	0.80	0.76	1.53	7729	965	5	0	4	0	0	logfile

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