Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SCY	25042	2024-02-18	2021-09-29	4.1	6.14	—	5.6	0.014	1.93	1.0	0.09	27.62	0.04	2.508	0.26	0.56	2.8	97.2	0.0	-0.81	0.82	0.67	—	5.6	0.007	0.73	0.0	0.05	27.28	0.00	1.819	24.96	0.00	5.6	94.4	0.0	-0.97	1.10	0.87	0.78	—	23206	850	11	294	0	0	10436	logfile
✔	7SD0	25044	2024-02-16	2021-09-29	2.95	3.72	2.97	3.5	0.007	0.97	3.0	0.07	13.55	0.00	1.813	11.57	0.91	5.3	94.7	0.0	-2.03	0.79	0.74	1.81	3.5	0.004	0.69	0.0	0.04	15.66	0.00	1.892	13.37	1.59	5.4	94.6	0.0	-1.64	0.98	0.80	0.76	1.53	7729	965	5	0	4	0	0	logfile
✔	7SDE	23517	2024-02-13	2021-09-29	3.2	3.37	—	3.3	0.004	0.92	1.0	0.06	17.03	0.00	2.201	25.84	8.60	10.6	89.1	0.3	-4.65	0.74	0.77	2.50	3.3	0.003	0.63	0.0	0.04	17.26	0.00	2.209	10.14	3.31	6.2	93.8	0.0	-0.07	0.55	0.74	0.79	2.18	5734	726	2	0	0	0	0	logfile
✔	7SCZ	25043	2024-02-18	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.44	0.03	2.529	0.04	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.65	0.0	0.04	27.66	0.00	1.950	6.94	1.82	2.3	97.7	0.0	2.54	1.42	0.79	0.80	1.56	23205	850	11	294	0	0	10435	logfile
✔	7PU7	13654	2024-02-14	2021-09-28	2.9	2.65	—	3.1	0.008	1.34	2.0	0.11	16.90	0.01	2.280	4.23	1.28	3.1	96.9	0.0	-1.39	0.83	0.85	3.37	3.1	0.003	0.63	0.0	0.04	17.82	0.00	2.234	4.86	2.90	2.3	97.7	0.0	-0.28	1.34	0.83	0.84	3.40	8990	1070	4	33	4	3	0	logfile
✔	7SCN	25039	2024-02-17	2021-09-28	3.02	3.22	—	3.2	0.022	1.79	0.0	0.11	10.40	0.01	1.142	0.92	0.16	1.6	98.4	0.0	1.22	0.76	0.83	4.32	3.2	0.003	0.62	0.0	0.04	14.69	0.00	2.136	7.02	2.26	1.8	98.2	0.0	0.97	0.68	0.75	0.85	3.39	17145	2145	15	0	15	0	0	logfile
✔	7SCH	25035	2024-02-14	2021-09-28	3.1	2.24	3.07	2.0	0.003	0.62	0.0	0.05	12.80	0.00	2.218	9.09	0.19	4.1	95.9	0.0	0.02	0.78	0.75	3.40	2.0	0.003	0.61	0.0	0.04	15.48	0.00	2.078	10.13	2.91	4.9	95.1	0.0	0.36	0.41	0.78	0.80	3.10	9711	1190	3	0	3	0	0	logfile
✔	7SCo	25040	2024-02-17	2021-09-28	3.37	3.52	—	3.5	0.021	1.73	0.0	0.11	9.57	0.01	1.876	0.57	0.00	1.4	98.6	0.0	0.59	0.73	0.78	2.79	3.5	0.003	0.65	0.0	0.04	14.89	0.00	2.125	10.62	2.26	2.9	97.1	0.0	-0.04	0.83	0.74	0.81	2.57	17130	2157	18	0	18	0	0	logfile
✔	7SCG	25034	2024-02-14	2021-09-28	3.0	3.41	—	3.3	0.005	0.61	0.0	0.04	12.87	0.00	2.274	9.34	0.00	4.4	95.6	0.0	-0.30	0.75	0.88	4.53	3.3	0.002	0.52	0.0	0.04	14.93	0.00	2.118	4.05	2.03	3.3	96.7	0.0	0.94	0.35	0.72	0.89	3.27	8539	1121	6	0	1	2	0	logfile
✔	7SCK	25037	2024-02-14	2021-09-28	2.8	2.26	2.83	2.1	0.005	0.61	0.0	0.05	13.39	0.00	1.744	9.55	0.36	5.5	94.5	0.0	-0.14	0.75	0.73	3.35	2.1	0.004	0.70	0.0	0.05	15.24	0.01	2.101	13.00	1.80	4.9	95.1	0.0	-0.51	0.55	0.77	0.77	2.83	10250	1240	6	2	9	0	0	logfile
✔	7SCA	25031	2024-02-13	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	14.95	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.003	0.58	0.0	0.04	16.11	0.00	2.149	8.14	1.25	1.0	99.0	0.0	2.73	1.09	0.79	0.85	5.36	55437	6836	116	0	54	1325	0	logfile
✔	7PTY	13643	2024-02-15	2021-09-27	4.63	5.10	—	4.5	0.003	0.68	0.0	0.04	13.76	0.00	2.199	25.20	0.00	10.9	89.1	0.0	-1.41	0.88	0.76	—	4.5	0.002	0.64	0.0	0.04	13.81	0.00	2.187	15.77	0.00	7.5	92.5	0.0	-0.69	0.40	0.89	0.77	—	13433	1715	2	0	0	0	0	logfile
✔	7PTQ	13633	2024-02-17	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	23.49	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.69	0.0	0.04	27.08	0.00	1.850	44.22	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7SC5	25022	2024-02-16	2021-09-27	3.88	4.26	—	3.9	0.008	1.11	0.0	0.07	17.37	0.01	1.959	10.29	0.97	11.3	88.5	0.2	-5.17	0.80	0.82	1.47	3.9	0.003	0.74	0.0	0.05	15.35	0.00	2.143	15.28	2.92	11.6	88.4	0.0	-2.38	1.18	0.80	0.82	0.93	14703	1770	21	0	60	0	0	logfile
✔	7SCC	25033	2024-02-24	2021-09-27	2.6	3.65	2.74	3.1	0.004	0.69	0.0	0.04	13.19	0.01	2.056	38.58	0.05	3.0	96.9	0.1	1.31	0.83	0.82	1.50	3.1	0.004	0.75	0.0	0.04	15.73	0.00	2.106	16.52	2.25	3.1	96.8	0.1	1.24	0.48	0.84	0.85	1.42	42904	5474	62	0	26	0	0	logfile
✔	7PTV	13641	2024-02-14	2021-09-27	3.3	3.13	2.96	3.1	0.008	0.80	0.0	0.05	14.24	0.01	2.259	8.31	2.05	8.4	91.6	0.0	-1.53	0.86	0.86	3.61	3.1	0.002	0.56	0.0	0.05	14.85	0.00	2.192	7.50	3.17	5.2	94.8	0.0	-0.78	0.37	0.87	0.89	2.95	9996	1290	4	0	2	0	0	logfile
✔	7PTX	13642	2024-02-13	2021-09-27	4.03	4.17	—	3.9	0.003	0.76	0.0	0.05	14.08	0.01	2.202	19.18	0.00	10.6	89.4	0.0	-1.97	0.84	0.72	—	3.9	0.003	0.76	0.0	0.05	14.47	0.00	2.241	19.24	0.00	10.5	89.5	0.0	-1.28	0.52	0.85	0.74	—	7653	1000	1	0	0	0	0	logfile
✔	7SC7	25028	2024-02-13	2021-09-27	2.8	3.66	—	3.3	0.007	1.08	1.0	0.06	14.60	0.01	2.240	6.50	1.49	2.4	97.6	0.0	-1.25	0.73	0.87	1.85	3.2	0.004	0.91	0.0	0.05	16.57	0.00	2.044	21.20	3.09	2.9	97.1	0.0	1.01	1.24	0.72	0.88	1.68	107930	13756	156	0	72	0	0	logfile
✔	7SC8	25029	2024-02-13	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	14.65	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.003	0.61	0.0	0.04	15.89	0.00	2.068	8.83	1.29	1.1	98.9	0.0	2.98	0.36	0.86	0.86	4.14	56784	6836	116	0	54	2672	0	logfile
✔	7PTR	13634	2024-02-21	2021-09-27	3.46	4.28	3.39	3.8	0.002	0.47	0.0	0.04	9.73	0.00	2.195	6.90	0.00	3.0	97.0	0.0	-0.08	0.75	0.80	1.24	3.9	0.002	0.51	0.0	0.04	12.59	0.00	2.080	9.02	0.98	3.6	96.4	0.0	-0.96	0.47	0.76	0.83	1.09	31704	4350	12	0	36	0	0	logfile

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