Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PTV	13641	2024-02-14	2021-09-27	3.3	3.13	2.96	3.1	0.008	0.80	0.0	0.05	14.24	0.01	2.259	8.31	2.05	8.4	91.6	0.0	-1.53	0.86	0.86	3.61	3.1	0.002	0.56	0.0	0.05	14.85	0.00	2.192	7.50	3.17	5.2	94.8	0.0	-0.78	0.37	0.87	0.89	2.95	9996	1290	4	0	2	0	0	logfile
✔	7SC7	25028	2024-02-13	2021-09-27	2.8	3.66	—	3.3	0.007	1.08	1.0	0.06	14.60	0.01	2.240	6.50	1.49	2.4	97.6	0.0	-1.25	0.73	0.87	1.85	3.2	0.004	0.91	0.0	0.05	16.57	0.00	2.044	21.20	3.09	2.9	97.1	0.0	1.01	1.24	0.72	0.88	1.68	107930	13756	156	0	72	0	0	logfile
✔	7PTU	13638	2024-02-17	2021-09-27	3.87	4.78	3.79	3.9	0.003	0.79	0.0	0.05	13.56	0.00	2.173	9.09	0.26	4.7	95.3	0.0	-1.48	0.81	0.83	1.51	3.9	0.005	0.67	0.0	0.04	14.58	0.00	2.181	13.25	2.86	6.3	93.7	0.0	-1.44	1.27	0.82	0.86	1.16	17035	2370	10	0	5	0	0	logfile
✔	7SCB	25032	2024-02-23	2021-09-27	2.5	3.49	2.56	3.0	0.007	1.51	3.0	0.08	17.11	0.02	2.465	3.44	2.69	3.6	96.2	0.2	-4.74	0.88	0.84	1.92	3.0	0.003	0.68	0.0	0.04	16.91	0.00	2.089	11.91	1.82	2.1	97.8	0.0	1.91	1.58	0.88	0.86	1.90	37229	4743	54	0	25	0	0	logfile
✔	7SBV	24989	2024-02-21	2021-09-26	3.1	3.30	2.97	3.1	0.023	1.76	5.0	0.12	10.30	0.01	2.276	0.67	0.23	2.4	97.6	0.0	-0.22	0.85	0.89	4.50	3.1	0.006	0.67	0.0	0.05	12.23	0.00	2.143	3.85	1.24	3.5	96.5	0.0	-0.14	1.20	0.85	0.91	3.93	29339	3531	24	0	268	0	0	logfile
✔	7SBW	24990	2024-02-21	2021-09-26	3.2	3.36	3.03	3.2	0.023	1.72	2.0	0.10	13.82	0.01	2.302	1.00	0.42	2.0	98.0	0.0	0.46	0.83	0.88	4.32	3.2	0.003	0.76	2.0	0.04	12.38	0.00	1.970	4.11	1.16	2.2	97.8	0.0	0.49	1.92	0.82	0.90	3.66	30061	3572	39	0	306	0	0	logfile
✔	7SC0	25007	2024-02-15	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.003	0.57	0.0	0.04	13.93	0.00	2.361	1.12	1.55	9.4	90.6	0.0	-0.71	1.49	0.68	0.82	1.99	11638	1419	11	0	0	0	0	logfile
✔	7ViG	32008	2024-02-14	2021-09-26	2.89	3.12	—	3.1	0.006	0.71	0.0	0.05	13.09	0.00	2.203	7.92	0.00	2.8	97.2	0.0	0.90	0.70	0.87	4.29	3.1	0.003	0.52	0.0	0.04	15.67	0.00	2.133	7.69	1.74	2.2	97.8	0.0	1.09	0.38	0.65	0.88	3.78	8920	1133	6	0	1	0	0	logfile
✔	7SC1	25008	2024-02-21	2021-09-26	3.2	3.73	3.31	3.6	0.006	0.63	0.0	0.05	18.12	0.00	2.169	10.07	0.06	4.0	96.0	0.0	-0.55	0.72	0.82	2.06	3.6	0.004	0.57	0.0	0.05	14.91	0.00	2.183	8.62	1.09	3.0	97.0	0.0	-0.17	0.32	0.73	0.85	1.74	29415	3705	12	0	45	0	0	logfile
✔	7ViH	32009	2024-02-14	2021-09-26	2.98	3.27	—	3.2	0.006	0.80	2.0	0.16	14.00	0.01	2.205	10.49	0.61	2.8	97.1	0.1	0.70	0.63	0.83	3.87	3.2	0.003	0.57	0.0	0.04	15.90	0.00	2.099	8.58	3.27	3.4	96.6	0.0	0.74	1.71	0.60	0.84	3.63	8938	1136	6	0	1	0	0	logfile
✔	7PT7	13620	2024-02-16	2021-09-26	3.8	3.34	—	3.4	0.007	0.74	4.0	0.05	14.97	0.00	1.865	11.56	0.64	3.3	96.7	0.0	0.56	0.76	0.80	1.56	3.4	0.004	0.59	0.0	0.04	15.90	0.00	0.817	11.45	1.48	3.3	96.7	0.0	0.73	0.30	0.77	0.82	1.42	67420	8451	29	0	50	0	0	logfile
✔	7SBY	24992	2024-02-21	2021-09-26	3.0	2.53	2.88	2.8	0.022	1.79	3.0	0.12	10.88	0.01	2.238	0.58	0.16	2.0	98.0	0.0	0.12	0.68	0.86	4.74	2.8	0.005	0.78	0.0	0.05	14.07	0.01	2.156	4.25	2.03	2.9	97.1	0.0	-0.14	2.38	0.66	0.86	4.30	29314	3516	23	0	282	0	0	logfile
✔	7PT6	13619	2024-02-18	2021-09-26	3.2	3.12	—	3.1	0.006	1.06	30.0	0.06	15.10	0.01	1.718	12.07	0.34	3.2	96.8	0.0	-0.49	0.71	0.82	2.72	3.1	0.002	0.52	0.0	0.04	16.36	0.00	1.959	7.98	1.46	2.8	97.2	0.0	0.50	1.51	0.71	0.86	2.61	74358	9282	34	0	52	0	0	logfile
✔	7SBX	24991	2024-02-21	2021-09-26	3.0	3.17	2.90	3.0	0.023	1.69	0.0	0.10	10.87	0.01	2.267	1.03	0.26	1.7	98.3	0.0	0.54	0.86	0.91	4.90	3.0	0.003	0.59	0.0	0.04	12.70	0.00	2.201	3.67	1.01	2.3	97.7	0.0	0.55	1.18	0.84	0.91	4.11	29599	3543	27	0	291	0	0	logfile
✔	7SBK	24981	2024-02-20	2021-09-25	3.1	2.77	—	2.3	0.015	1.79	14.0	0.11	17.41	0.01	1.339	6.46	1.49	6.3	93.0	0.7	-1.92	0.83	0.80	3.47	2.2	0.004	0.81	0.0	0.05	14.86	0.00	2.138	11.16	2.78	5.9	93.9	0.2	-0.32	1.07	0.84	0.83	2.93	27417	3303	39	0	117	0	0	logfile
✔	7SBL	24982	2024-02-20	2021-09-25	3.4	2.79	—	2.2	0.014	1.88	19.0	0.13	14.92	0.01	2.197	8.36	2.72	7.8	91.5	0.7	-1.91	0.84	0.76	2.62	2.2	0.003	0.82	0.0	0.05	15.28	0.00	2.141	11.70	4.29	5.8	94.1	0.1	-0.69	1.48	0.84	0.83	2.15	27026	3286	35	0	96	0	0	logfile
✔	7SBP	24984	2024-02-20	2021-09-25	3.1	2.87	—	2.2	0.015	1.79	15.0	0.11	17.09	0.01	2.078	6.07	1.38	7.0	92.3	0.7	-1.85	0.83	0.81	3.14	3.0	0.005	0.89	2.0	0.05	15.22	0.00	1.995	11.43	2.90	4.4	95.4	0.2	-0.13	0.65	0.84	0.83	2.52	27693	3330	42	0	123	0	0	logfile
✔	7SBA	24974	2024-02-21	2021-09-24	2.9	2.40	—	2.1	0.013	2.01	38.0	0.12	17.45	0.02	1.957	1.91	2.75	4.2	95.7	0.1	-2.32	0.75	0.78	3.96	2.1	0.004	0.74	0.0	0.04	19.45	0.00	2.013	11.04	4.45	3.1	96.9	0.0	0.36	0.69	0.77	0.81	3.10	30651	3669	14	72	0	0	0	logfile
✔	7SBB	24976	2024-02-20	2021-09-24	3.1	2.42	—	2.1	0.013	2.09	97.0	0.14	18.01	0.02	2.030	4.28	3.53	4.6	95.2	0.1	-2.12	0.75	0.77	3.72	2.9	0.004	0.72	0.0	0.04	19.34	0.00	2.079	12.17	4.48	3.2	96.8	0.0	0.21	0.70	0.77	0.81	2.79	28938	3435	13	76	0	0	0	logfile
✔	7SB3	24968	2024-02-21	2021-09-23	3.3	3.51	3.21	3.3	0.019	1.74	4.0	0.09	10.58	0.01	2.294	1.70	0.36	1.9	98.1	0.0	0.19	0.83	0.86	3.62	3.3	0.003	0.71	0.0	0.04	12.35	0.00	2.158	5.42	1.20	3.3	96.7	0.0	0.18	0.69	0.84	0.89	3.48	29451	3543	22	0	272	0	0	logfile

• ← previous
• Page 296 of 588
• next →