Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PSN	13615	2024-02-14	2021-09-23	2.9	3.55	—	3.5	0.009	0.82	0.0	0.04	15.99	0.01	1.923	4.83	0.00	2.7	97.3	0.0	-3.01	0.59	0.78	3.43	3.5	0.003	0.55	0.0	0.04	16.21	0.00	2.001	7.12	1.80	1.9	98.1	0.0	1.03	0.48	0.58	0.80	2.43	9464	1170	4	0	8	0	0	logfile
✔	7PSM	13614	2024-02-14	2021-09-23	3.4	3.99	—	3.9	0.008	1.04	0.0	0.05	17.19	0.01	2.078	3.51	0.00	3.7	96.3	0.0	-3.29	0.63	0.80	1.18	3.9	0.004	0.58	0.0	0.04	16.63	0.00	1.880	8.17	3.99	2.8	97.2	0.0	1.12	0.91	0.60	0.78	0.77	9394	1170	4	0	6	0	0	logfile
✔	7SB3	24968	2024-02-21	2021-09-23	3.3	3.51	3.21	3.3	0.019	1.74	4.0	0.09	10.58	0.01	2.294	1.70	0.36	1.9	98.1	0.0	0.19	0.83	0.86	3.62	3.3	0.003	0.71	0.0	0.04	12.35	0.00	2.158	5.42	1.20	3.3	96.7	0.0	0.18	0.69	0.84	0.89	3.48	29451	3543	22	0	272	0	0	logfile
✔	7SAX	24958	2024-02-13	2021-09-23	3.0	2.60	2.97	3.0	0.007	0.66	0.0	0.04	13.54	0.00	2.174	5.46	0.00	3.3	96.7	0.0	1.22	0.58	0.85	2.70	2.9	0.003	0.51	0.0	0.04	17.26	0.00	2.217	6.20	3.59	2.5	97.5	0.0	3.05	0.47	0.61	0.86	1.64	5305	689	7	0	0	0	0	logfile
✔	7SAU	24957	2024-02-13	2021-09-23	3.0	2.41	2.77	2.7	0.005	0.61	0.0	0.04	13.77	0.01	2.122	6.13	0.15	5.1	94.9	0.0	0.64	0.61	0.84	3.01	2.7	0.003	0.55	0.0	0.04	17.29	0.00	2.142	6.84	1.67	4.4	95.6	0.0	2.36	0.49	0.61	0.85	2.50	6317	791	7	0	0	0	0	logfile
✔	7SB2	24961	2024-02-13	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.65	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.003	0.72	0.0	0.04	16.27	0.00	2.219	16.13	0.79	5.7	94.3	0.0	1.03	0.45	0.83	0.86	0.58	4715	598	2	0	0	0	0	logfile
✔	7SAQ	24953	2024-02-13	2021-09-23	2.9	2.87	—	3.1	0.006	0.84	0.0	0.07	14.71	0.02	2.241	11.87	0.00	12.8	87.2	0.0	-3.19	0.57	0.76	4.42	3.1	0.004	0.77	0.0	0.07	15.74	0.00	2.188	8.36	3.33	7.8	92.2	0.0	-3.26	1.17	0.50	0.81	4.80	5710	675	10	0	20	0	0	logfile
✔	7SB5	24970	2024-02-21	2021-09-23	4.2	4.53	4.05	4.2	0.021	1.77	8.0	0.11	10.61	0.01	2.138	1.99	0.00	2.2	97.8	0.0	0.57	0.86	0.85	—	4.2	0.002	0.58	0.0	0.04	10.91	0.00	2.141	6.44	0.00	2.6	97.4	0.0	0.51	1.18	0.86	0.87	—	29457	3550	19	0	263	0	0	logfile
✔	7PSL	13613	2024-02-14	2021-09-23	3.3	3.77	—	3.7	0.006	0.65	0.0	0.04	15.10	0.00	2.258	5.27	0.00	3.9	96.1	0.0	-3.04	0.61	0.76	2.57	3.7	0.003	0.60	0.0	0.04	16.48	0.00	2.213	7.39	2.03	2.4	97.6	0.0	1.38	0.93	0.59	0.76	1.68	9612	1200	4	0	4	0	0	logfile
✔	7SAZ	24959	2024-02-13	2021-09-23	3.0	3.13	2.81	3.1	0.004	0.63	0.0	0.04	13.70	0.00	2.188	9.47	0.00	3.7	96.2	0.1	0.22	0.63	0.85	2.55	3.1	0.003	0.52	0.0	0.04	16.85	0.00	2.223	8.68	2.38	2.8	97.0	0.1	1.95	0.94	0.64	0.87	2.45	5708	722	7	0	0	0	0	logfile
✔	7SAR	24954	2024-02-15	2021-09-23	3.2	3.05	—	3.5	0.005	0.80	0.0	0.07	13.63	0.01	2.157	15.13	0.00	11.3	88.7	0.0	-3.51	0.50	0.76	3.18	3.4	0.004	0.75	0.0	0.06	15.33	0.00	2.108	7.70	6.35	9.5	90.5	0.0	-3.22	1.67	0.43	0.80	4.30	11420	1350	20	0	40	0	0	logfile
✔	7SAS	24955	2024-02-15	2021-09-23	3.7	3.32	—	4.1	0.005	0.87	0.0	0.07	13.33	0.01	2.166	18.82	0.00	12.0	88.0	0.0	-3.25	0.40	0.67	1.98	4.1	0.005	0.83	0.0	0.06	15.11	0.00	2.093	12.71	7.30	12.9	87.1	0.0	-3.65	0.61	0.44	0.76	3.42	11420	1350	20	0	40	0	0	logfile
✔	7SAT	24956	2024-02-14	2021-09-23	3.9	3.85	3.80	3.8	0.004	0.76	0.0	0.04	14.44	0.00	2.080	15.57	0.28	7.4	92.6	0.0	0.06	0.61	0.77	1.82	3.8	0.004	0.85	0.0	0.04	17.14	0.00	2.123	17.07	2.25	5.7	94.3	0.0	0.39	0.63	0.62	0.77	1.14	6581	822	7	0	0	0	0	logfile
✔	7VHP	32002	2024-02-16	2021-09-22	3.27	3.30	—	3.2	0.003	0.63	0.0	0.04	13.46	0.00	1.149	15.64	0.32	3.1	96.8	0.0	1.82	0.78	0.73	1.24	3.2	0.002	0.57	0.0	0.04	16.21	0.00	2.134	9.66	1.83	3.4	96.6	0.0	1.97	1.33	0.85	0.83	1.53	66600	8304	48	0	0	0	0	logfile
✔	7SA4	24944	2024-02-28	2021-09-22	2.55	2.59	—	2.5	0.011	0.86	1.0	0.07	23.37	0.02	1.125	11.36	0.06	3.6	96.3	0.0	-0.37	0.76	0.90	4.18	2.6	0.009	0.78	0.0	0.05	23.43	0.01	0.989	10.01	2.60	3.7	96.3	0.0	0.28	1.51	0.75	0.91	3.63	150065	6175	71	4724	441	2	0	logfile
✔	7PSA	13611	2024-02-19	2021-09-22	3.4	2.91	3.34	3.2	0.007	0.83	0.0	1.03	15.91	0.01	1.940	7.02	0.01	6.8	93.2	0.0	-1.05	0.58	0.75	2.95	3.2	0.009	1.59	0.0	0.31	17.10	0.00	1.850	10.54	1.66	7.1	92.9	0.0	-0.12	3.36	0.60	0.79	2.45	133024	8182	67	0	35	0	65942	logfile
✔	7SAD	24949	2024-02-19	2021-09-22	3.96	3.71	—	4.0	0.006	0.78	6.0	0.05	13.29	0.01	1.515	9.19	0.49	5.4	94.4	0.2	-0.41	0.63	0.78	1.81	4.0	0.004	0.67	0.0	0.04	14.80	0.00	2.144	9.15	2.36	7.4	92.4	0.1	-0.58	0.44	0.64	0.79	1.68	23082	3160	11	0	16	0	0	logfile
✔	7SAA	24946	2024-02-19	2021-09-22	2.97	3.19	—	3.1	0.012	1.16	44.0	0.08	14.41	0.01	1.720	8.33	2.99	4.8	94.9	0.3	-0.87	0.73	0.87	2.97	3.1	0.003	0.63	0.0	0.04	15.96	0.01	2.160	6.83	2.49	5.5	94.4	0.2	-0.02	0.98	0.74	0.89	2.85	23618	3164	11	0	14	0	0	logfile
✔	7VHJ	31996	2024-02-19	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.005	0.70	0.0	0.04	13.42	0.00	2.048	15.20	0.00	8.0	92.0	0.0	-1.58	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	7PSD	13612	2024-02-14	2021-09-22	3.0	3.33	2.96	3.2	0.015	1.12	0.0	0.07	14.39	0.01	2.146	7.65	0.00	5.5	94.5	0.0	-1.38	0.70	0.87	2.60	3.2	0.003	0.61	0.0	0.04	16.05	0.00	2.254	9.40	2.08	2.8	97.2	0.0	1.78	0.40	0.63	0.85	2.35	9032	1160	2	0	0	0	0	logfile

• ← previous
• Page 297 of 588
• next →