Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PRo	13609	2024-02-14	2021-09-22	3.0	3.28	3.20	3.2	0.012	1.09	0.0	0.06	13.80	0.01	2.192	7.00	0.00	4.8	95.2	0.0	-1.65	0.61	0.84	3.12	3.2	0.003	0.59	0.0	0.04	16.17	0.00	2.209	8.80	2.08	3.9	96.1	0.0	1.69	0.42	0.59	0.84	2.39	9032	1160	2	0	0	0	0	logfile
✔	7VHL	31998	2024-02-19	2021-09-22	3.9	4.06	—	3.9	0.002	0.54	0.0	0.04	13.84	0.00	2.161	11.05	0.14	7.3	92.6	0.1	-1.26	0.82	0.81	1.34	3.9	0.003	0.58	0.0	0.04	15.23	0.00	2.134	13.20	1.30	8.0	92.0	0.1	-1.35	0.32	0.82	0.82	1.15	25462	3263	3	0	0	0	0	logfile
✔	7SAB	24947	2024-02-19	2021-09-22	4.3	4.66	—	4.5	0.006	0.81	9.0	0.06	13.43	0.01	1.955	10.59	0.38	6.3	93.5	0.2	-1.48	0.68	0.81	—	4.5	0.002	0.64	0.0	0.04	13.31	0.00	2.187	7.99	0.00	6.5	93.4	0.1	-0.98	0.96	0.69	0.81	—	23510	3160	10	0	13	0	0	logfile
✔	7SAM	24952	2024-02-13	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	28.37	0.01	1.818	83.35	0.00	0.0	0.0	0.0	—	5.72	0.95	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7VHJ	31996	2024-02-19	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.005	0.70	0.0	0.04	13.42	0.00	2.048	15.20	0.00	8.0	92.0	0.0	-1.58	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	7PRU	13610	2024-02-14	2021-09-22	3.2	3.55	3.24	3.5	0.010	1.05	0.0	0.06	14.87	0.01	2.128	9.65	0.00	6.8	93.2	0.0	-2.01	0.67	0.83	2.06	3.5	0.003	0.66	0.0	0.04	16.31	0.00	2.241	11.11	1.97	5.4	94.6	0.0	0.94	1.27	0.65	0.84	1.79	9116	1164	4	0	2	0	0	logfile
✔	7SAD	24949	2024-02-19	2021-09-22	3.96	3.71	—	4.0	0.006	0.78	6.0	0.05	13.29	0.01	1.515	9.19	0.49	5.4	94.4	0.2	-0.41	0.63	0.78	1.81	4.0	0.004	0.67	0.0	0.04	14.80	0.00	2.144	9.15	2.36	7.4	92.4	0.1	-0.58	0.44	0.64	0.79	1.68	23082	3160	11	0	16	0	0	logfile
✔	7SAA	24946	2024-02-19	2021-09-22	2.97	3.19	—	3.1	0.012	1.16	44.0	0.08	14.41	0.01	1.720	8.33	2.99	4.8	94.9	0.3	-0.87	0.73	0.87	2.97	3.1	0.003	0.63	0.0	0.04	15.96	0.01	2.160	6.83	2.49	5.5	94.4	0.2	-0.02	0.98	0.74	0.89	2.85	23618	3164	11	0	14	0	0	logfile
✔	7PSA	13611	2024-02-19	2021-09-22	3.4	2.91	3.34	3.2	0.007	0.83	0.0	1.03	15.91	0.01	1.940	7.02	0.01	6.8	93.2	0.0	-1.05	0.58	0.75	2.95	3.2	0.009	1.59	0.0	0.31	17.10	0.00	1.850	10.54	1.66	7.1	92.9	0.0	-0.12	3.36	0.60	0.79	2.45	133024	8182	67	0	35	0	65942	logfile
✔	7SA4	24944	2024-02-28	2021-09-22	2.55	2.59	—	2.5	0.011	0.86	1.0	0.07	23.37	0.02	1.125	11.36	0.06	3.6	96.3	0.0	-0.37	0.76	0.90	4.18	2.6	0.009	0.78	0.0	0.05	23.43	0.01	0.989	10.01	2.60	3.7	96.3	0.0	0.28	1.51	0.75	0.91	3.63	150065	6175	71	4724	441	2	0	logfile
✔	7SAE	24950	2024-02-17	2021-09-22	3.0	3.49	—	3.0	0.008	0.99	0.0	0.05	24.29	0.01	2.251	2.73	0.29	7.8	92.1	0.1	-4.37	0.81	0.78	3.61	3.0	0.003	0.60	0.0	0.04	23.96	0.00	2.102	6.77	2.01	6.4	93.6	0.0	-1.67	0.92	0.87	0.91	2.90	68571	2090	19	2434	0	0	0	logfile
✔	7PQG	13593	2024-02-13	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.04	0.0	0.06	15.86	0.00	2.132	35.30	3.36	7.6	92.4	0.0	-0.93	0.68	0.56	0.77	-0.07	3251	423	2	0	0	0	0	logfile
✔	7VH6	31988	2024-02-23	2021-09-21	3.8	3.52	—	3.5	0.013	1.59	0.0	0.05	19.29	0.01	1.910	14.98	0.72	3.4	96.6	0.0	-1.18	0.62	0.63	1.35	3.4	0.003	0.69	0.0	0.04	18.03	0.00	2.007	16.65	2.81	3.6	96.4	0.0	-0.20	1.75	0.63	0.65	1.14	38202	4608	12	0	63	0	0	logfile
✔	7S9V	24938	2024-02-16	2021-09-21	3.3	3.25	—	3.4	0.007	0.86	0.0	0.05	13.96	0.01	2.257	2.04	0.00	5.1	94.9	0.0	-1.75	0.83	0.82	2.23	3.4	0.002	0.53	0.0	0.04	15.39	0.00	2.211	3.66	2.04	3.0	97.0	0.0	-0.20	1.19	0.83	0.82	1.99	14286	1825	3	0	1	0	0	logfile
✔	7VH5	31986	2024-02-23	2021-09-21	3.2	3.35	—	3.3	0.017	1.53	0.0	0.07	18.95	0.01	1.257	12.04	0.31	3.5	96.5	0.0	-2.75	0.68	0.80	2.58	3.3	0.003	0.56	0.0	0.04	16.73	0.00	2.101	9.80	0.97	2.8	97.2	0.0	1.36	1.18	0.69	0.78	1.91	39615	4824	12	0	52	0	0	logfile
✔	7S9W	24939	2024-02-16	2021-09-21	3.4	3.38	—	3.4	0.011	1.16	1.0	0.05	15.91	0.01	2.308	2.86	0.47	2.3	97.7	0.1	-0.94	0.64	0.78	1.96	3.5	0.004	0.61	0.0	0.04	16.51	0.00	2.254	5.15	3.08	3.3	96.7	0.0	0.02	0.33	0.62	0.78	1.98	14052	1767	4	7	1	0	0	logfile
✔	7S9U	24937	2024-02-17	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	24.72	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.003	0.62	0.0	0.03	24.06	0.00	1.751	8.48	2.70	6.8	93.1	0.1	-2.16	0.43	0.89	0.89	1.66	68620	2090	19	2436	0	0	0	logfile
✔	7S9E	24934	2024-02-14	2021-09-20	3.7	3.21	—	3.6	0.004	0.72	0.0	0.05	13.53	0.00	2.202	11.48	0.00	7.1	92.9	0.0	-0.36	0.60	0.81	2.60	3.6	0.003	0.57	0.0	0.04	15.15	0.00	2.245	9.17	2.96	6.5	93.5	0.0	1.04	0.47	0.61	0.81	2.49	10476	1354	4	0	2	0	0	logfile
✔	7PR1	13607	2024-02-14	2021-09-20	2.81	3.22	2.90	3.1	0.007	0.95	0.0	0.05	14.35	0.00	2.053	7.90	0.00	2.1	97.9	0.0	-0.18	0.63	0.83	3.36	3.1	0.003	0.59	0.0	0.04	16.39	0.00	2.153	10.59	1.44	2.0	98.0	0.0	1.77	0.94	0.57	0.81	3.05	9222	1174	4	0	4	0	0	logfile
✔	7PQX	13606	2024-02-14	2021-09-20	3.08	3.48	—	3.4	0.010	1.11	0.0	0.06	14.20	0.01	2.296	4.37	0.00	4.3	95.7	0.0	-2.13	0.69	0.85	2.92	3.4	0.003	0.62	0.0	0.04	15.62	0.00	2.209	8.64	2.29	3.1	96.9	0.0	1.44	0.92	0.69	0.86	2.54	9032	1160	2	0	0	0	0	logfile

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