Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S9B	24931	2024-02-14	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.003	0.64	0.0	0.04	11.71	0.00	2.232	11.03	0.00	7.8	92.1	0.1	0.56	0.41	0.60	0.80	—	10458	1356	2	0	0	0	0	logfile
✔	7S9D	24933	2024-02-14	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.64	0.0	0.04	11.73	0.00	2.153	11.67	0.00	8.0	91.7	0.3	-0.75	0.44	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	7PQT	13604	2024-02-14	2021-09-20	2.65	2.14	—	2.9	0.011	0.87	0.0	0.05	18.50	0.01	2.130	13.52	10.42	6.9	92.4	0.7	-3.82	0.76	0.71	4.07	2.9	0.004	0.78	0.0	0.04	18.39	0.01	2.102	12.32	3.71	4.7	94.9	0.3	-0.02	0.37	0.82	0.85	3.54	10464	1272	10	0	4	8	0	logfile
✔	7VH3	31985	2024-02-15	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	7.95	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.003	0.71	0.0	0.04	15.69	0.00	2.158	13.90	3.33	8.0	92.0	0.1	-1.43	1.66	0.70	0.73	1.07	12749	1612	1	0	0	0	0	logfile
✔	7VH1	31983	2024-02-15	2021-09-20	4.2	4.15	—	4.0	0.009	1.32	0.0	0.07	12.24	0.01	2.222	5.93	0.74	11.9	87.8	0.2	-5.32	0.79	0.75	—	4.0	0.003	0.74	0.0	0.04	12.98	0.00	2.137	10.26	0.00	8.3	91.7	0.0	-1.96	3.32	0.79	0.75	—	13156	1661	2	0	2	0	0	logfile
✔	7PQU	13605	2024-02-15	2021-09-20	3.03	1.80	—	3.4	0.008	0.90	0.0	0.05	17.24	0.01	0.051	14.73	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.003	0.60	0.0	0.04	16.70	0.01	2.236	9.43	3.37	5.7	94.3	0.0	-0.55	0.99	0.76	0.79	2.34	10798	1312	12	0	8	14	0	logfile
✔	7PR1	13607	2024-02-14	2021-09-20	2.81	3.22	2.90	3.1	0.007	0.95	0.0	0.05	14.35	0.00	2.053	7.90	0.00	2.1	97.9	0.0	-0.18	0.63	0.83	3.36	3.1	0.003	0.59	0.0	0.04	16.39	0.00	2.153	10.59	1.44	2.0	98.0	0.0	1.77	0.94	0.57	0.81	3.05	9222	1174	4	0	4	0	0	logfile
✔	7PQX	13606	2024-02-14	2021-09-20	3.08	3.48	—	3.4	0.010	1.11	0.0	0.06	14.20	0.01	2.296	4.37	0.00	4.3	95.7	0.0	-2.13	0.69	0.85	2.92	3.4	0.003	0.62	0.0	0.04	15.62	0.00	2.209	8.64	2.29	3.1	96.9	0.0	1.44	0.92	0.69	0.86	2.54	9032	1160	2	0	0	0	0	logfile
✔	7S9A	24930	2024-02-14	2021-09-20	3.8	3.50	—	3.6	0.003	0.60	0.0	0.04	12.63	0.01	2.290	6.24	0.00	6.6	93.1	0.3	1.38	0.62	0.82	2.00	3.6	0.003	0.57	0.0	0.04	14.05	0.00	2.269	5.96	1.32	6.0	93.7	0.3	1.37	0.31	0.62	0.82	1.48	10420	1350	4	0	2	0	0	logfile
✔	7VGX	31979	2024-02-15	2021-09-19	3.2	2.32	—	3.3	0.004	0.67	0.0	0.05	12.58	0.00	2.255	5.84	0.00	3.1	96.9	0.0	0.12	0.76	0.79	3.49	3.2	0.005	0.65	0.0	0.04	15.52	0.00	2.204	4.95	3.04	3.6	96.4	0.0	0.00	1.33	0.78	0.83	3.31	9044	1149	6	0	0	0	0	logfile
✔	7S8U	24922	2024-02-13	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.003	0.77	0.0	0.04	16.55	0.00	2.152	16.26	5.44	9.2	90.5	0.3	-0.14	1.35	0.51	0.61	0.36	5210	667	1	0	0	0	0	logfile
✔	7VGR	31977	2024-02-16	2021-09-18	2.7	3.11	—	3.0	0.002	0.55	0.0	0.04	10.59	0.00	2.259	7.72	0.18	5.6	94.2	0.2	-0.41	0.65	0.76	2.17	3.0	0.004	0.71	0.0	0.04	15.31	0.00	2.095	8.79	3.32	7.2	92.8	0.0	0.13	0.74	0.66	0.82	2.91	9872	1272	6	0	0	0	0	logfile
✔	7S8N	24898	2024-02-14	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.07	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.0	0.003	0.54	0.0	0.04	15.81	0.00	2.245	3.09	1.83	2.3	97.7	0.0	0.93	1.01	0.82	0.82	2.80	8154	1090	6	0	1	0	0	logfile
✔	7VGS	31978	2024-02-16	2021-09-18	2.8	3.28	—	3.3	0.002	0.66	0.0	0.04	12.19	0.01	2.230	9.89	0.38	7.0	93.0	0.0	-1.16	0.67	0.75	2.14	3.3	0.003	0.68	0.0	0.04	15.79	0.00	2.154	10.51	3.30	8.3	91.7	0.0	-0.59	0.62	0.67	0.79	2.75	9700	1254	6	0	0	0	0	logfile
✔	7PQQ	13596	2024-02-13	2021-09-18	3.3	3.44	—	3.5	0.004	0.69	0.0	0.04	14.02	0.00	2.244	12.20	0.00	4.6	95.4	0.0	-2.50	0.44	0.73	3.02	3.4	0.004	0.71	0.0	0.04	16.46	0.00	2.192	10.98	5.10	5.1	94.9	0.0	-1.49	0.45	0.45	0.76	2.50	3207	417	2	0	0	0	0	logfile
✔	7S8M	24897	2024-02-14	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.57	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.002	0.52	0.0	0.04	14.84	0.00	2.223	6.51	2.29	3.5	96.5	0.0	1.36	0.31	0.81	0.82	3.72	8346	1102	6	0	0	0	0	logfile
✔	7S8L	24896	2024-02-14	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.61	0.0	0.04	15.56	0.00	2.243	3.26	2.19	3.5	96.5	0.0	1.26	0.34	0.84	0.84	3.89	8177	1096	6	0	0	0	0	logfile
✔	7S8P	24900	2024-02-13	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.74	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.8	0.004	0.66	0.0	0.04	15.26	0.00	2.127	3.24	3.11	5.3	94.7	0.0	0.36	0.36	0.84	0.84	3.96	8093	1089	5	0	1	0	0	logfile
✔	7VGQ	31975	2024-02-15	2021-09-18	4.0	4.26	—	4.2	0.009	1.27	2.0	0.07	12.16	0.01	2.211	7.11	0.74	13.9	85.9	0.2	-5.44	0.71	0.75	—	4.2	0.003	0.70	0.0	0.04	15.13	0.00	2.115	8.28	3.16	8.2	91.7	0.1	-2.06	0.66	0.70	0.77	—	13156	1661	2	0	2	0	0	logfile
✔	7S89	24891	2024-02-18	2021-09-17	2.54	2.40	—	2.4	0.012	1.28	4.0	0.06	16.97	0.01	2.222	5.87	1.74	2.5	97.5	0.0	-3.47	0.79	0.82	4.59	2.4	0.003	0.69	0.0	0.04	17.06	0.00	2.217	10.43	1.65	3.6	96.4	0.0	1.53	0.62	0.79	0.86	4.06	20425	2376	12	0	45	88	0	logfile

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