Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S82	24889	2024-02-14	2021-09-17	3.5	3.79	3.54	3.8	0.005	0.72	0.0	0.04	13.22	0.00	2.097	17.60	0.00	7.7	92.3	0.0	-1.35	0.78	0.82	2.97	3.8	0.004	0.71	0.0	0.04	15.76	0.00	2.226	17.50	2.94	5.3	94.7	0.0	-1.13	1.09	0.78	0.82	2.21	4904	634	4	0	0	0	0	logfile
✔	7S88	24890	2024-02-18	2021-09-17	2.69	3.00	—	2.9	0.013	1.48	4.0	0.06	19.39	0.01	2.234	6.97	1.31	3.6	96.4	0.0	-4.89	0.64	0.84	5.07	2.9	0.002	0.55	0.0	0.04	17.17	0.00	2.201	8.89	1.97	2.9	97.1	0.0	1.62	0.98	0.62	0.85	3.43	22201	2456	12	0	65	144	0	logfile
✔	7PQH	13594	2024-02-23	2021-09-17	3.87	2.74	3.96	1.8	0.004	0.88	0.0	0.05	14.43	0.01	2.083	8.81	0.12	6.2	93.8	0.0	-1.40	0.68	0.67	0.79	1.6	0.004	0.75	0.0	0.04	16.47	0.00	2.086	15.28	2.18	6.7	93.3	0.0	-0.42	0.45	0.68	0.68	0.68	102671	12832	12	0	0	0	0	logfile
✔	7PQE	13591	2024-02-15	2021-09-17	3.7	3.72	—	3.6	0.006	0.68	0.0	0.04	13.13	0.00	2.107	12.33	0.09	5.6	94.4	0.0	-1.09	0.81	0.82	2.85	3.7	0.003	0.58	0.0	0.04	15.33	0.00	2.204	10.67	2.19	4.5	95.5	0.0	0.69	0.51	0.80	0.81	2.36	10746	1365	5	0	2	0	0	logfile
✔	7S89	24891	2024-02-18	2021-09-17	2.54	2.40	—	2.4	0.012	1.28	4.0	0.06	16.97	0.01	2.222	5.87	1.74	2.5	97.5	0.0	-3.47	0.79	0.82	4.59	2.4	0.003	0.69	0.0	0.04	17.06	0.00	2.217	10.43	1.65	3.6	96.4	0.0	1.53	0.62	0.79	0.86	4.06	20425	2376	12	0	45	88	0	logfile
✔	7VGG	31968	2024-02-13	2021-09-16	3.1	3.32	—	3.3	0.004	0.57	0.0	0.05	13.32	0.00	2.025	6.09	0.00	3.0	97.0	0.0	-0.81	0.76	0.82	3.77	3.3	0.004	0.54	0.0	0.05	15.39	0.00	2.207	9.66	2.45	3.4	96.6	0.0	-0.47	0.38	0.78	0.86	3.06	5274	680	2	0	0	0	0	logfile
✔	7VGF	31967	2024-02-14	2021-09-16	3.3	3.62	—	3.5	0.004	0.70	0.0	0.04	14.50	0.00	2.083	9.67	0.24	3.3	96.7	0.0	2.62	0.63	0.74	1.47	3.5	0.003	0.52	0.0	0.04	15.46	0.00	2.040	6.69	2.39	2.4	97.6	0.0	2.83	0.47	0.69	0.80	1.53	8280	1100	4	0	4	0	0	logfile
✔	7VGi	31970	2024-02-15	2021-09-16	3.36	3.08	—	3.3	0.005	0.75	0.0	0.05	16.05	0.00	2.032	9.42	0.38	10.5	89.3	0.2	-4.39	0.68	0.83	3.20	3.4	0.004	0.66	0.0	0.04	16.37	0.00	1.971	6.95	1.60	9.6	90.4	0.0	-2.43	0.38	0.69	0.85	2.48	12174	1493	6	0	8	0	0	logfile
✔	7VGJ	31971	2024-02-15	2021-09-16	3.98	3.67	—	3.5	0.007	0.91	0.0	0.05	15.69	0.01	2.160	26.07	0.48	16.4	83.6	0.0	-3.55	0.62	0.78	2.06	3.5	0.003	0.72	0.0	0.04	16.82	0.00	2.189	16.94	2.17	11.0	89.0	0.0	-1.97	0.45	0.61	0.77	1.75	11460	1414	3	0	1	0	0	logfile
✔	7VGH	31969	2024-02-15	2021-09-16	3.39	3.14	—	3.3	0.005	0.75	0.0	0.05	17.58	0.00	1.989	9.00	0.23	12.4	87.6	0.0	-2.72	0.67	0.84	2.72	3.3	0.005	0.66	0.0	0.05	16.68	0.00	1.951	7.71	2.14	12.5	87.5	0.0	-2.02	1.12	0.67	0.86	2.42	12404	1521	7	0	14	0	0	logfile
✔	7S7C	24883	2024-02-16	2021-09-15	3.62	3.53	—	3.6	0.003	0.49	0.0	0.04	13.47	0.00	2.019	8.97	1.10	8.3	91.7	0.0	-0.49	0.72	0.73	2.17	3.6	0.003	0.84	1.0	0.04	16.74	0.00	1.803	9.73	2.75	4.9	95.1	0.0	0.03	0.63	0.75	0.74	1.62	13850	1629	8	37	1	0	0	logfile
✔	7S7B	24882	2024-02-18	2021-09-15	4.06	3.82	—	3.6	0.004	0.46	0.0	0.04	10.89	0.00	1.963	8.58	1.54	7.9	92.1	0.0	0.42	0.81	0.80	—	3.6	0.003	0.60	0.0	0.04	12.63	0.00	2.205	9.03	0.04	5.5	94.5	0.0	0.53	1.25	0.82	0.81	—	22217	2709	10	22	2	0	0	logfile
✔	7S6i	24876	2024-02-20	2021-09-14	3.2	3.55	3.30	3.5	0.022	1.73	0.0	0.12	9.81	0.01	2.394	0.44	0.10	3.2	96.8	0.0	0.33	0.81	0.85	4.14	3.5	0.004	0.74	1.0	0.04	12.87	0.00	2.096	4.87	1.18	3.1	96.8	0.1	-0.02	1.34	0.82	0.88	3.56	26772	3309	24	0	66	0	0	logfile
✔	7S6L	24879	2024-02-19	2021-09-14	4.0	4.77	4.03	4.2	0.020	1.74	0.0	0.11	9.97	0.01	2.336	0.63	0.04	2.2	97.8	0.0	0.74	0.84	0.73	—	4.2	0.004	0.63	0.0	0.04	12.15	0.00	2.130	10.39	0.44	3.9	96.1	0.0	0.71	0.68	0.85	0.83	—	24755	3117	15	0	30	0	0	logfile
✔	7PPJ	13581	2024-02-13	2021-09-14	3.44	3.68	3.46	3.7	0.005	0.72	0.0	0.05	14.04	0.00	2.245	15.25	1.20	6.8	92.9	0.3	-3.05	0.72	0.75	2.21	3.7	0.004	0.72	0.0	0.05	15.77	0.00	2.127	14.57	1.89	5.8	94.2	0.0	-0.37	0.60	0.72	0.78	1.83	5175	643	1	0	1	0	0	logfile
✔	7VFX	31962	2024-02-14	2021-09-14	2.8	2.73	2.85	2.9	0.003	0.65	0.0	0.05	15.03	0.00	2.225	5.38	0.00	3.1	96.9	0.0	0.41	0.70	0.87	3.94	2.9	0.003	0.56	0.0	0.04	15.49	0.00	2.134	5.10	1.24	2.9	97.1	0.0	1.08	1.25	0.71	0.90	3.73	9004	1139	7	0	4	0	0	logfile
✔	7VG3	31964	2024-02-13	2021-09-14	3.73	3.86	—	3.8	0.006	1.15	2.0	0.06	16.12	0.01	1.935	7.51	5.13	10.8	88.7	0.6	-4.51	0.80	0.84	3.10	3.8	0.003	0.70	0.0	0.04	17.29	0.00	2.208	9.76	5.00	10.0	90.0	0.0	-1.51	0.60	0.80	0.85	1.78	8118	860	4	62	3	0	0	logfile
✔	7PPo	13583	2024-02-15	2021-09-14	2.91	3.10	—	3.0	0.007	0.80	0.0	0.04	12.41	0.00	2.092	7.57	3.41	5.6	94.4	0.0	-2.62	0.81	0.84	3.91	3.0	0.004	0.61	0.0	0.04	15.24	0.00	2.119	7.85	2.64	4.2	95.8	0.0	0.63	0.46	0.81	0.86	3.22	10990	1383	5	0	2	0	0	logfile
✔	7VFF	31951	2024-02-15	2021-09-13	4.1	3.76	3.90	4.0	0.007	0.72	0.0	0.05	13.87	0.00	2.334	2.40	0.41	3.6	96.4	0.0	-0.82	0.79	0.82	—	3.9	0.003	0.56	0.0	0.05	13.70	0.00	2.209	5.00	0.00	2.9	97.1	0.1	0.14	1.44	0.77	0.84	—	12579	1581	3	0	0	0	0	logfile
✔	7S65	24850	2024-02-18	2021-09-13	3.2	3.04	3.23	3.3	0.014	1.46	0.0	0.07	12.10	0.01	1.385	8.25	0.26	2.0	98.0	0.0	0.19	0.64	0.74	3.55	3.3	0.005	0.69	0.0	0.04	16.29	0.00	1.793	11.19	2.68	2.6	97.4	0.0	0.08	0.69	0.65	0.79	3.21	22049	2760	12	0	24	0	0	logfile

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