Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VFG	31952	2024-02-19	2021-09-13	3.87	3.19	3.86	3.6	0.007	0.79	0.0	0.05	13.86	0.01	2.182	3.82	0.45	3.6	96.4	0.0	-1.24	0.76	0.77	1.95	3.5	0.004	0.80	0.0	0.05	15.60	0.00	2.033	7.82	2.37	3.5	96.5	0.0	-0.52	1.79	0.76	0.78	2.50	25044	3162	6	0	0	0	0	logfile
✔	7PP6	13580	2024-02-16	2021-09-13	3.4	4.07	—	3.6	0.003	0.64	0.0	0.04	12.33	0.00	1.846	6.09	0.19	9.2	90.8	0.0	-2.04	0.77	0.76	1.96	3.6	0.002	0.56	0.0	0.04	11.41	0.00	1.966	7.06	0.48	8.0	92.0	0.0	-1.36	0.40	0.78	0.80	1.77	66562	4592	22	0	28	92	31702	logfile
✔	7VFP	31957	2024-02-14	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.003	0.76	0.0	0.04	14.00	0.00	1.992	15.72	0.00	7.2	92.8	0.1	0.08	0.53	0.64	0.78	—	8857	1130	8	0	3	2	0	logfile
✔	7VFE	31950	2024-02-15	2021-09-13	2.63	2.74	2.54	2.7	0.008	0.58	0.0	0.05	13.52	0.00	2.285	2.98	3.08	3.8	96.2	0.0	-0.79	0.84	0.89	5.29	2.7	0.004	0.57	0.0	0.05	15.85	0.00	2.252	3.54	2.26	2.9	97.1	0.0	0.39	1.13	0.82	0.90	4.94	12630	1587	3	0	0	0	0	logfile
✔	7S65	24850	2024-02-18	2021-09-13	3.2	3.04	3.23	3.3	0.014	1.46	0.0	0.07	12.10	0.01	1.385	8.25	0.26	2.0	98.0	0.0	0.19	0.64	0.74	3.55	3.3	0.005	0.69	0.0	0.04	16.29	0.00	1.793	11.19	2.68	2.6	97.4	0.0	0.08	0.69	0.65	0.79	3.21	22049	2760	12	0	24	0	0	logfile
✔	7VFD	31949	2024-02-15	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.62	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.51	0.0	0.05	15.26	0.00	2.214	3.46	0.73	1.9	98.1	0.0	0.43	1.53	0.80	0.89	5.54	13262	1623	6	0	0	350	0	logfile
✔	7VFF	31951	2024-02-15	2021-09-13	4.1	3.76	3.90	4.0	0.007	0.72	0.0	0.05	13.87	0.00	2.334	2.40	0.41	3.6	96.4	0.0	-0.82	0.79	0.82	—	3.9	0.003	0.56	0.0	0.05	13.70	0.00	2.209	5.00	0.00	2.9	97.1	0.1	0.14	1.44	0.77	0.84	—	12579	1581	3	0	0	0	0	logfile
✔	7S66	24851	2024-02-19	2021-09-13	2.8	3.06	2.88	3.1	0.013	1.34	0.0	0.06	12.06	0.01	1.770	2.28	0.00	1.4	98.6	0.0	0.50	0.75	0.83	3.82	3.0	0.004	0.55	0.0	0.04	16.61	0.00	1.822	5.70	2.53	1.7	98.3	0.0	0.78	1.36	0.73	0.85	3.58	23242	2910	12	0	24	0	0	logfile
✔	7PP4	13579	2024-02-19	2021-09-13	3.84	4.20	3.93	4.0	0.002	0.48	0.0	0.04	9.43	0.00	1.926	5.55	0.39	3.3	96.7	0.0	-0.03	0.83	0.80	1.49	4.0	0.004	0.66	0.0	0.04	13.80	0.00	2.140	10.49	2.41	4.3	95.7	0.0	-0.13	1.35	0.84	0.84	1.21	23816	3059	7	0	3	0	0	logfile
✔	7VFJ	31956	2024-02-14	2021-09-13	3.98	4.28	—	4.1	0.004	0.83	0.0	0.05	13.08	0.01	2.134	13.86	0.00	7.0	92.8	0.3	-0.92	0.66	0.77	1.38	4.1	0.003	0.89	0.0	0.05	16.51	0.00	2.126	16.44	4.91	8.2	91.6	0.2	-0.75	1.06	0.67	0.79	0.85	8780	1130	6	0	0	0	0	logfile
✔	7S63	24848	2024-02-24	2021-09-13	4.12	4.34	4.10	4.3	0.004	0.79	0.0	0.05	18.50	0.01	1.697	13.70	0.00	9.8	90.0	0.2	-1.90	0.71	0.67	—	4.3	0.004	0.73	0.0	0.05	14.71	0.01	2.151	13.53	0.00	11.0	88.9	0.2	-1.75	1.55	0.73	0.69	—	45208	5680	8	0	68	0	0	logfile
✔	7S61	24846	2024-02-18	2021-09-12	4.0	4.41	—	4.1	0.010	1.58	1.0	0.08	17.70	0.01	2.160	4.35	8.22	4.6	95.3	0.1	-4.86	0.65	0.81	—	4.1	0.003	0.81	0.0	0.05	16.89	0.00	1.978	15.16	3.30	3.7	96.2	0.0	0.39	0.81	0.66	0.83	—	20985	2676	5	0	4	0	0	logfile
✔	7S5X	24842	2024-02-18	2021-09-12	3.7	4.13	—	4.0	0.010	1.39	6.0	0.08	17.26	0.01	2.165	4.21	6.10	5.8	94.2	0.0	-5.19	0.66	0.83	1.39	4.0	0.003	0.73	0.0	0.04	17.00	0.00	1.972	13.53	3.38	4.2	95.8	0.0	0.29	1.47	0.65	0.83	0.98	21213	2696	5	0	4	0	0	logfile
✔	7S60	24845	2024-02-18	2021-09-12	3.7	4.13	—	4.0	0.009	1.42	3.0	0.07	16.09	0.01	2.157	3.93	1.35	5.3	94.6	0.1	-5.53	0.65	0.83	1.27	4.0	0.003	0.74	0.0	0.04	16.79	0.00	1.974	12.21	2.57	5.2	94.7	0.0	0.20	0.58	0.65	0.84	0.87	21086	2679	5	0	4	0	0	logfile
✔	7S5Z	24844	2024-02-18	2021-09-12	3.9	4.28	—	4.1	0.005	0.96	0.0	0.06	16.84	0.01	2.073	6.17	6.47	4.9	95.1	0.0	-3.30	0.67	0.83	0.76	4.1	0.007	0.81	0.0	0.05	17.14	0.00	1.797	20.79	3.39	6.1	93.8	0.0	-0.14	0.73	0.69	0.85	0.69	21148	2687	5	0	4	0	0	logfile
✔	7S62	24847	2024-02-15	2021-09-12	3.65	3.86	3.61	3.8	0.005	0.72	0.0	0.05	19.02	0.01	1.694	11.28	0.08	8.9	91.0	0.1	-1.38	0.66	0.78	1.97	3.8	0.003	0.67	0.0	0.05	16.89	0.01	2.205	10.68	3.71	8.3	91.6	0.1	-1.16	0.37	0.66	0.77	1.24	11013	1382	1	0	17	0	0	logfile
✔	7S5T	24839	2024-02-14	2021-09-12	3.1	3.47	—	3.4	0.005	0.68	0.0	0.05	15.46	0.00	2.252	5.67	4.68	2.5	97.5	0.0	-2.41	0.60	0.86	2.49	3.4	0.004	0.51	0.0	0.04	15.66	0.00	2.191	8.19	2.88	2.3	97.7	0.0	0.61	1.91	0.64	0.88	1.98	10078	1284	5	0	2	0	0	logfile
✔	7S5Y	24843	2024-02-18	2021-09-12	3.9	4.28	—	4.1	0.010	1.48	4.0	0.08	17.70	0.01	2.160	5.99	7.41	5.3	94.7	0.1	-5.12	0.64	0.81	0.64	4.1	0.004	0.90	0.0	0.04	17.24	0.00	1.924	15.75	2.79	4.6	95.4	0.0	0.16	1.52	0.65	0.83	0.73	21106	2686	5	0	4	0	0	logfile
✔	7VF5	31947	2024-02-15	2021-09-10	3.0	3.69	—	3.6	0.003	0.64	0.0	0.04	14.39	0.00	2.182	8.35	0.00	2.8	97.2	0.0	0.56	0.68	0.77	1.64	3.6	0.004	0.66	0.0	0.04	16.68	0.00	2.185	9.40	2.20	3.0	97.0	0.0	1.24	0.91	0.65	0.78	1.51	12313	1556	3	0	0	0	0	logfile
✔	7VF2	31946	2024-02-15	2021-09-10	3.0	3.55	—	3.4	0.004	0.73	0.0	0.04	15.88	0.00	2.095	9.72	0.26	3.7	96.3	0.0	-2.72	0.77	0.84	1.85	3.4	0.003	0.67	0.0	0.04	17.88	0.00	2.166	10.23	1.49	3.0	97.0	0.0	1.40	0.59	0.75	0.84	1.24	13565	1716	4	0	0	0	0	logfile

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