Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S4J	24828	2024-02-24	2021-09-09	2.16	2.44	—	2.5	0.009	1.07	1.0	0.05	22.91	0.00	1.948	13.88	4.30	5.2	94.3	0.5	0.65	0.75	0.84	4.80	2.4	0.004	0.67	0.0	0.05	19.45	0.00	1.920	9.21	2.51	4.7	95.1	0.3	0.58	0.75	0.78	0.91	4.92	22780	2577	27	0	63	304	0	logfile
✔	7S4M	24831	2024-02-18	2021-09-09	2.42	3.75	—	3.8	0.007	0.93	2.0	0.05	19.36	0.01	2.015	13.81	6.06	5.5	94.0	0.4	-0.17	0.37	0.60	2.25	3.8	0.004	0.67	0.0	0.04	18.09	0.01	2.039	12.81	3.31	6.4	93.6	0.0	-0.57	0.57	0.44	0.73	2.29	21729	2619	31	0	84	36	0	logfile
✔	7S4U	24833	2024-02-15	2021-09-09	3.56	3.78	—	3.6	0.004	0.74	0.0	0.04	19.56	0.00	2.090	4.36	0.00	3.3	96.7	0.0	-1.09	0.78	0.75	2.48	3.6	0.003	0.62	0.0	0.04	19.86	0.00	2.160	5.84	0.71	4.7	95.3	0.0	-0.54	0.49	0.78	0.76	2.14	11927	1092	4	142	0	0	0	logfile
✔	7S4i	24827	2024-02-24	2021-09-09	2.26	2.27	—	2.2	0.008	1.01	0.0	0.05	22.64	0.00	1.450	15.82	3.29	5.2	94.3	0.5	0.83	0.79	0.85	4.75	2.2	0.006	0.70	0.0	0.05	20.20	0.01	1.966	8.57	2.33	5.2	94.6	0.2	0.75	0.59	0.84	0.91	4.94	22834	2577	27	0	63	355	0	logfile
✔	7S4X	24838	2024-02-16	2021-09-09	2.76	3.30	—	3.1	0.006	0.60	0.0	0.04	19.28	0.00	1.878	7.05	0.00	4.0	96.0	0.0	0.02	0.87	0.89	4.31	3.1	0.003	0.52	0.0	0.04	19.52	0.00	1.933	7.81	0.66	3.1	96.9	0.0	0.88	0.29	0.83	0.88	3.68	14491	1354	10	161	5	7	0	logfile
✔	7S4V	24835	2024-02-15	2021-09-09	3.28	3.87	—	3.7	0.003	0.54	0.0	0.04	19.69	0.00	2.202	4.81	0.00	5.0	95.0	0.0	-1.46	0.80	0.80	2.24	3.7	0.002	0.52	0.0	0.04	20.28	0.00	2.251	5.41	0.70	4.1	95.9	0.0	-0.42	0.55	0.85	0.87	2.08	12215	1122	4	145	0	0	0	logfile
✔	7S4K	24829	2024-02-24	2021-09-09	2.36	2.82	—	2.6	0.009	1.05	3.0	0.05	22.37	0.00	1.448	13.70	3.29	5.4	94.4	0.2	0.71	0.74	0.82	4.62	2.6	0.004	0.74	1.0	0.05	19.44	0.00	2.006	8.48	2.24	4.6	95.2	0.2	1.02	0.57	0.78	0.91	4.69	22589	2577	27	0	63	110	0	logfile
✔	7Po5	13563	2024-02-22	2021-09-08	3.9	2.66	3.86	3.3	0.003	0.65	0.0	0.05	13.44	0.01	2.277	3.18	0.03	3.6	96.4	0.0	-1.68	0.73	0.68	2.05	2.2	0.004	0.74	0.0	0.05	15.88	0.00	2.113	14.03	2.72	4.9	95.1	0.0	-0.67	0.70	0.72	0.72	1.84	32934	4218	12	0	15	0	0	logfile
✔	7VEB	31945	2024-02-22	2021-09-08	4.2	4.27	—	4.2	0.011	1.37	0.0	0.05	13.45	0.00	2.165	8.06	0.74	2.6	97.4	0.0	0.70	0.82	0.85	—	4.2	0.003	0.80	0.0	0.04	14.76	0.00	2.030	17.08	0.06	2.7	97.2	0.1	0.93	0.96	0.81	0.82	—	35530	4537	51	0	36	0	0	logfile
✔	7S4H	24826	2024-02-24	2021-09-08	2.14	2.27	—	2.3	0.009	1.03	3.0	0.05	22.83	0.00	1.502	14.45	2.83	4.8	94.9	0.2	0.71	0.77	0.85	4.94	2.2	0.006	0.71	0.0	0.05	20.65	0.01	1.952	7.89	2.33	5.0	94.6	0.4	0.83	0.59	0.81	0.92	5.20	22889	2577	27	0	63	410	0	logfile
✔	7VEA	31944	2024-02-14	2021-09-08	3.7	3.55	—	3.5	0.009	1.13	0.0	0.04	13.27	0.00	2.098	6.48	0.58	1.5	98.4	0.0	2.51	0.65	0.78	1.44	3.6	0.004	0.75	0.0	0.04	16.07	0.00	2.058	14.65	3.66	2.1	97.9	0.0	2.40	1.40	0.69	0.77	1.12	111542	15594	165	0	84	0	0	logfile
✔	7PNM	13549	2024-02-22	2021-09-07	3.7	2.64	3.78	3.2	0.004	0.75	0.0	0.05	13.60	0.01	2.275	4.49	0.14	4.0	96.0	0.0	-2.11	0.73	0.69	2.15	2.2	0.004	0.76	0.0	0.05	15.06	0.00	2.105	15.89	2.46	4.3	95.7	0.0	-1.34	1.19	0.72	0.71	2.01	33540	4224	24	0	48	0	0	logfile
✔	7VDT	31925	2024-02-16	2021-09-07	2.8	3.17	—	2.9	0.007	0.70	0.0	0.04	23.62	0.00	1.303	12.86	0.34	4.7	95.2	0.1	-0.92	0.86	0.86	3.23	3.0	0.004	0.61	0.0	0.04	24.91	0.00	2.004	9.20	2.46	4.6	95.4	0.0	0.79	1.15	0.86	0.88	2.58	16704	1384	12	272	3	0	0	logfile
✔	7PNQ	13550	2024-02-22	2021-09-07	3.7	2.74	3.64	3.5	0.003	0.64	0.0	0.05	13.23	0.01	2.308	2.92	0.03	3.0	96.9	0.1	-1.49	0.64	0.56	1.31	2.1	0.003	0.75	0.0	0.05	14.90	0.00	2.040	14.84	2.25	4.7	95.3	0.0	-0.79	1.39	0.67	0.65	1.51	32925	4218	12	0	15	0	0	logfile
✔	7VDV	31926	2024-02-24	2021-09-07	3.4	3.96	—	3.3	0.010	0.91	2.0	0.05	20.10	0.01	1.858	24.98	0.03	7.5	92.4	0.1	-1.78	0.86	0.80	1.51	3.3	0.004	0.67	0.0	0.04	21.03	0.00	1.896	15.99	1.72	5.9	94.1	0.0	-0.24	1.21	0.86	0.79	1.02	40028	4253	25	272	26	0	0	logfile
✔	7S3i	24825	2024-02-13	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.51	0.0	0.04	16.17	0.00	2.093	6.17	1.84	1.8	98.2	0.0	1.82	0.92	0.78	0.89	3.45	8094	1023	5	0	0	0	0	logfile
✔	7VDH	31918	2024-02-14	2021-09-07	2.9	3.12	—	3.0	0.011	1.39	0.0	0.08	13.91	0.01	2.232	4.34	0.00	2.8	97.2	0.0	-2.38	0.75	0.83	3.85	3.0	0.003	0.67	0.0	0.04	16.04	0.00	2.121	8.21	1.17	2.6	97.4	0.0	0.67	0.52	0.75	0.84	2.80	8710	1109	6	0	2	0	0	logfile
✔	7VDL	31922	2024-02-14	2021-09-07	3.22	3.02	—	3.0	0.008	1.16	1.0	0.07	13.81	0.01	1.743	8.31	0.11	4.9	95.1	0.0	-1.82	0.66	0.78	2.75	3.1	0.003	0.67	0.0	0.04	15.81	0.00	2.103	11.11	2.78	4.3	95.7	0.0	0.49	0.43	0.67	0.80	2.41	8598	1100	7	0	1	0	0	logfile
✔	7VDM	31923	2024-02-14	2021-09-07	2.98	2.90	—	3.0	0.008	1.29	0.0	0.07	13.65	0.01	2.261	4.17	0.22	4.5	95.5	0.0	-2.74	0.66	0.77	3.13	3.0	0.004	0.70	0.0	0.04	16.41	0.00	2.156	9.22	3.12	3.8	96.2	0.0	0.03	1.54	0.66	0.80	3.03	8563	1096	7	0	1	0	0	logfile
✔	7VDF	31916	2024-02-18	2021-09-06	2.56	3.01	2.63	2.9	0.004	0.55	0.0	0.05	15.73	0.00	1.838	6.95	0.00	4.0	96.0	0.0	-0.05	0.60	0.80	4.50	2.9	0.004	0.53	0.0	0.04	15.73	0.00	1.965	7.65	0.86	4.1	95.9	0.0	-0.27	0.34	0.58	0.80	4.45	22692	1455	6	0	15	0	11043	logfile

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