Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PNB	13546	2024-02-16	2021-09-06	3.46	2.29	—	2.2	0.013	1.75	18.0	0.12	18.90	0.03	1.317	8.70	2.56	5.5	94.5	0.0	0.09	0.77	0.84	4.32	2.1	0.005	0.94	1.0	0.05	13.83	0.00	2.067	8.37	3.56	4.2	95.8	0.0	0.28	0.51	0.74	0.79	3.89	15714	1647	54	0	252	0	0	logfile
✔	7VDC	31913	2024-02-14	2021-09-06	3.28	2.77	3.31	2.7	0.002	0.52	0.0	0.04	14.50	0.01	2.066	9.92	0.09	3.0	97.0	0.0	0.15	0.63	0.73	1.31	2.7	0.005	0.63	0.0	0.04	16.40	0.01	2.083	12.63	2.52	5.4	94.6	0.0	0.19	0.34	0.63	0.76	1.37	10472	1372	4	0	0	0	0	logfile
✔	7VD8	31910	2024-02-23	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	2.67	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.003	0.57	0.0	0.04	16.51	0.00	1.985	2.08	0.56	1.2	98.8	0.0	5.31	0.23	0.74	0.80	8.07	38201	4128	72	0	329	2472	0	logfile
✔	7VDF	31916	2024-02-18	2021-09-06	2.56	3.01	2.63	2.9	0.004	0.55	0.0	0.05	15.73	0.00	1.838	6.95	0.00	4.0	96.0	0.0	-0.05	0.60	0.80	4.50	2.9	0.004	0.53	0.0	0.04	15.73	0.00	1.965	7.65	0.86	4.1	95.9	0.0	-0.27	0.34	0.58	0.80	4.45	22692	1455	6	0	15	0	11043	logfile
✔	7VD2	31904	2024-02-14	2021-09-06	2.53	3.44	—	3.1	0.011	0.91	0.0	0.04	18.20	0.00	2.196	17.85	0.50	3.2	96.8	0.0	1.47	0.63	0.71	5.52	3.1	0.004	0.74	0.0	0.04	18.34	0.00	2.187	7.87	3.11	2.6	97.4	0.0	2.63	1.01	0.66	0.88	4.17	9117	951	18	0	43	0	0	logfile
✔	7VD9	31911	2024-02-16	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.002	0.56	0.0	0.04	17.34	0.00	2.213	7.37	1.86	4.1	95.9	0.0	0.03	0.26	0.58	0.73	3.56	16426	1991	8	0	8	0	0	logfile
✔	7VCX	31899	2024-02-22	2021-09-04	3.24	3.34	—	3.3	0.016	1.22	0.0	0.07	10.49	0.01	2.065	2.84	0.00	5.8	94.2	0.0	-3.43	0.77	0.84	2.62	3.3	0.003	0.54	0.0	0.04	13.68	0.00	2.088	5.28	0.66	3.4	96.6	0.0	0.69	1.25	0.78	0.85	1.73	35490	4476	12	0	24	0	0	logfile
✔	7VCV	31897	2024-02-23	2021-09-04	3.21	3.32	—	3.2	0.012	1.08	0.0	0.06	10.31	0.01	2.097	3.88	0.00	6.2	93.8	0.0	-3.61	0.75	0.81	2.50	3.3	0.003	0.55	0.0	0.04	14.04	0.00	2.021	5.30	1.32	4.9	95.1	0.0	0.27	1.24	0.75	0.83	1.76	36036	4548	12	0	24	0	0	logfile
✔	7VCT	31895	2024-02-22	2021-09-04	3.21	3.41	—	3.4	0.007	0.94	0.0	0.05	9.93	0.01	2.132	3.51	0.00	4.4	95.6	0.0	-3.08	0.77	0.82	2.62	3.3	0.003	0.59	0.0	0.04	13.38	0.00	2.001	6.86	1.25	3.9	96.1	0.0	0.54	1.30	0.76	0.84	2.00	35694	4506	12	0	18	0	0	logfile
✔	7S37	24818	2024-02-14	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	14.85	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.2	0.003	0.70	0.0	0.04	17.34	0.00	2.090	15.97	2.17	3.4	96.6	0.0	0.20	1.46	0.77	0.68	0.38	9392	1033	2	46	0	0	0	logfile
✔	7PN1	13545	2024-02-14	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.003	0.54	0.0	0.04	14.63	0.00	1.935	7.71	1.07	3.1	96.9	0.0	1.67	0.98	0.60	0.80	0.70	10384	657	1	0	0	0	5237	logfile
✔	7VCU	31896	2024-02-18	2021-09-04	3.15	3.44	—	3.2	0.006	0.84	0.0	0.05	9.75	0.01	1.802	4.97	0.00	4.2	95.8	0.0	-2.77	0.86	0.83	2.00	3.2	0.004	0.61	0.0	0.04	12.03	0.00	1.963	6.84	0.37	4.1	95.9	0.0	0.86	0.62	0.88	0.87	1.87	71952	9084	24	0	36	0	0	logfile
✔	7PMY	13544	2024-02-14	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.54	0.0	0.04	12.41	0.00	1.991	7.53	2.28	3.4	96.6	0.0	0.74	0.78	0.65	0.80	2.02	10499	659	2	0	0	0	5276	logfile
✔	7VCS	31894	2024-02-18	2021-09-03	3.32	3.64	—	3.3	0.007	0.89	0.0	0.05	10.13	0.01	2.076	4.87	0.00	5.0	95.0	0.0	-2.72	0.87	0.84	1.94	3.3	0.002	0.55	0.0	0.04	12.56	0.00	2.017	6.92	0.70	3.9	96.1	0.0	1.02	1.29	0.88	0.85	1.69	72828	9192	24	0	36	0	0	logfile
✔	7PMX	13543	2024-02-14	2021-09-03	3.5	3.85	3.50	3.7	0.003	0.54	0.0	0.04	10.52	0.00	2.134	6.34	2.13	3.2	96.8	0.0	0.60	0.61	0.80	1.97	3.7	0.003	0.56	0.0	0.04	13.04	0.00	2.128	7.88	1.60	4.2	95.8	0.0	1.24	0.99	0.61	0.79	1.43	10417	659	2	0	0	0	5253	logfile
✔	7PMW	13542	2024-02-14	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.004	0.57	0.0	0.04	11.51	0.00	1.986	11.63	0.00	4.9	95.1	0.0	0.47	1.19	0.58	0.76	—	10153	643	2	0	0	0	5123	logfile
✔	7S1M	24805	2024-02-14	2021-09-02	2.41	2.95	2.09	2.8	0.003	0.51	0.0	0.04	13.54	0.00	2.233	4.89	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.003	0.54	0.0	0.04	16.08	0.00	2.179	5.62	1.67	1.7	98.3	0.0	1.74	0.92	0.77	0.87	3.71	9160	1168	6	0	1	0	0	logfile
✔	7S1Y	24812	2024-02-13	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.71	2.0	0.04	14.94	0.00	2.179	13.53	3.47	7.2	92.6	0.2	-0.43	0.55	0.52	0.65	0.63	6580	948	4	0	6	0	0	logfile
✔	7PM6	13522	2024-02-19	2021-09-02	3.0	3.43	3.02	2.8	0.012	1.07	4.0	0.06	14.94	0.01	1.304	6.32	0.04	0.4	99.6	0.0	-1.15	0.92	0.83	2.83	2.8	0.005	0.71	0.0	0.04	15.58	0.00	1.957	9.43	1.21	1.8	98.2	0.0	1.24	1.28	0.93	0.89	2.43	23334	2904	15	0	13	0	0	logfile
✔	7PMi	13535	2024-02-14	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	2.0	0.07	15.80	0.01	1.306	5.04	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.3	0.003	0.66	0.0	0.04	15.73	0.00	2.017	7.56	0.46	1.5	98.5	0.0	1.35	0.66	0.94	0.88	2.56	10189	1264	6	0	6	0	0	logfile

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