Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PM6	13522	2024-02-19	2021-09-02	3.0	3.43	3.02	2.8	0.012	1.07	4.0	0.06	14.94	0.01	1.304	6.32	0.04	0.4	99.6	0.0	-1.15	0.92	0.83	2.83	2.8	0.005	0.71	0.0	0.04	15.58	0.00	1.957	9.43	1.21	1.8	98.2	0.0	1.24	1.28	0.93	0.89	2.43	23334	2904	15	0	13	0	0	logfile
✔	7S1Z	24813	2024-02-13	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.11	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.004	1.04	1.0	0.05	14.74	0.00	2.200	11.30	1.60	10.1	89.8	0.1	0.06	1.15	0.47	0.69	1.75	6416	944	2	0	0	0	0	logfile
✔	7PMN	13539	2024-02-18	2021-09-02	3.2	3.93	—	3.5	0.007	0.94	0.0	0.05	14.38	0.01	1.984	0.34	0.55	2.9	97.1	0.0	-0.35	0.79	0.71	2.00	3.5	0.003	0.63	0.0	0.04	15.67	0.00	1.954	8.98	1.25	2.6	97.4	0.0	1.09	0.62	0.82	0.80	1.55	74640	9131	28	67	11	0	0	logfile
✔	7PM9	13525	2024-02-14	2021-09-02	3.7	4.22	3.68	3.6	0.005	0.93	1.0	0.05	16.17	0.01	1.316	7.04	0.09	0.2	99.8	0.0	-1.87	0.90	0.80	2.23	3.6	0.003	0.67	0.0	0.04	16.03	0.00	2.032	10.73	1.12	1.6	98.4	0.0	1.52	1.73	0.91	0.84	1.83	10086	1252	6	0	5	0	0	logfile
✔	7PMD	13529	2024-02-14	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	1.0	0.06	15.52	0.01	1.314	3.61	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.5	0.002	0.67	0.0	0.04	15.43	0.00	2.048	6.08	0.37	1.5	98.5	0.0	1.73	1.27	0.93	0.87	2.96	10189	1264	6	0	6	0	0	logfile
✔	7S1M	24805	2024-02-14	2021-09-02	2.41	2.95	2.09	2.8	0.003	0.51	0.0	0.04	13.54	0.00	2.233	4.89	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.003	0.54	0.0	0.04	16.08	0.00	2.179	5.62	1.67	1.7	98.3	0.0	1.74	0.92	0.77	0.87	3.71	9160	1168	6	0	1	0	0	logfile
✔	7PM7	13523	2024-02-14	2021-09-02	3.5	3.92	3.46	3.4	0.004	0.85	1.0	0.05	15.67	0.01	1.316	5.26	0.09	0.2	99.8	0.0	-1.31	0.90	0.84	3.49	3.4	0.003	0.66	0.0	0.04	15.81	0.00	1.959	8.87	1.11	1.9	98.1	0.0	1.82	2.24	0.90	0.84	3.06	10149	1260	6	0	5	0	0	logfile
✔	7PMB	13527	2024-02-14	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	1.0	0.06	15.86	0.01	1.317	6.47	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.7	0.003	0.72	0.0	0.04	16.31	0.00	1.918	9.30	0.65	2.0	98.0	0.0	1.55	1.32	0.91	0.85	2.29	10113	1255	6	0	5	0	0	logfile
✔	7PMC	13528	2024-02-14	2021-09-02	3.7	4.09	3.62	3.5	0.008	1.07	1.0	0.06	16.21	0.01	1.317	7.05	0.09	0.2	99.8	0.0	-1.41	0.89	0.80	2.38	3.5	0.003	0.66	0.0	0.04	16.07	0.00	2.038	10.02	1.48	1.5	98.5	0.0	1.73	1.34	0.90	0.82	1.72	10139	1258	6	0	5	0	0	logfile
✔	7PMG	13532	2024-02-14	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	2.0	0.07	15.70	0.01	1.308	4.64	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.63	0.0	0.04	15.46	0.00	1.972	6.13	0.55	1.5	98.5	0.0	1.70	1.27	0.94	0.89	2.87	10189	1264	6	0	6	0	0	logfile
✔	7S21	24815	2024-02-16	2021-09-02	3.4	3.86	—	3.8	0.006	0.78	0.0	0.04	15.50	0.01	0.827	18.73	0.00	14.6	85.4	0.0	-2.41	0.72	0.84	3.42	3.8	0.005	0.71	0.0	0.04	17.52	0.00	2.240	10.48	4.43	13.2	86.8	0.0	-1.14	0.44	0.74	0.85	2.81	122460	15900	60	0	0	0	0	logfile
✔	7S1X	24807	2024-02-15	2021-09-02	2.9	3.15	—	3.3	0.005	0.83	2.0	0.05	12.05	0.01	2.052	18.39	0.17	9.9	90.1	0.0	-0.65	0.51	0.72	3.89	3.3	0.004	1.02	4.0	0.05	15.26	0.01	2.082	9.80	3.72	8.2	91.7	0.1	0.09	0.50	0.61	0.81	3.54	12658	1742	4	0	6	0	0	logfile
✔	7S1Y	24812	2024-02-13	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.71	2.0	0.04	14.94	0.00	2.179	13.53	3.47	7.2	92.6	0.2	-0.43	0.55	0.52	0.65	0.63	6580	948	4	0	6	0	0	logfile
✔	7PML	13538	2024-02-14	2021-09-02	3.3	4.18	3.26	3.2	0.005	0.86	1.0	0.05	15.93	0.01	1.315	3.95	0.09	0.2	99.8	0.0	-1.35	0.91	0.83	2.88	3.3	0.002	0.62	0.0	0.04	15.91	0.00	2.004	5.93	0.28	1.1	98.9	0.0	1.97	0.70	0.94	0.88	2.33	10189	1264	6	0	6	0	0	logfile
✔	7PMH	13533	2024-02-14	2021-09-02	3.4	4.28	3.26	3.3	0.009	1.01	2.0	0.06	15.50	0.01	1.310	4.17	0.09	0.2	99.8	0.0	-1.51	0.91	0.83	3.35	3.3	0.002	0.61	0.0	0.04	15.67	0.00	2.012	6.89	0.37	1.5	98.5	0.0	1.79	0.64	0.94	0.88	2.74	10154	1259	6	0	6	0	0	logfile
✔	7PMi	13535	2024-02-14	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	2.0	0.07	15.80	0.01	1.306	5.04	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.3	0.003	0.66	0.0	0.04	15.73	0.00	2.017	7.56	0.46	1.5	98.5	0.0	1.35	0.66	0.94	0.88	2.56	10189	1264	6	0	6	0	0	logfile
✔	7PMV	13541	2024-02-16	2021-09-02	3.7	3.39	—	3.4	0.003	0.68	0.0	0.04	15.11	0.01	1.939	9.07	0.03	14.7	85.0	0.3	-2.65	0.36	0.58	1.90	3.4	0.003	0.78	0.0	0.04	15.26	0.01	1.917	9.16	1.20	15.1	84.6	0.3	-2.79	0.53	0.53	0.70	1.80	68016	4560	13	0	39	4	32673	logfile
✔	7PMJ	13536	2024-02-14	2021-09-02	3.4	4.31	3.37	3.3	0.010	1.11	1.0	0.06	15.90	0.01	1.310	6.69	0.09	0.2	99.8	0.0	-1.97	0.90	0.82	3.01	3.3	0.003	0.62	0.0	0.04	15.70	0.00	1.942	7.89	0.84	1.4	98.6	0.0	1.76	0.72	0.93	0.86	2.49	10085	1251	6	0	6	0	0	logfile
✔	7PME	13530	2024-02-19	2021-09-02	2.9	3.93	2.92	3.1	0.005	0.83	3.0	0.05	15.51	0.01	1.313	4.76	0.08	0.1	99.9	0.0	-1.26	0.93	0.86	3.45	3.1	0.003	0.65	0.0	0.04	15.68	0.00	1.935	7.67	0.68	1.8	98.2	0.0	1.63	0.63	0.94	0.89	3.01	23370	2906	15	0	15	0	0	logfile
✔	7PLT	13501	2024-02-14	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	1.0	0.07	14.64	0.01	1.312	4.16	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.003	0.64	0.0	0.04	15.63	0.00	2.034	7.29	1.02	1.1	98.9	0.0	1.55	0.65	0.91	0.88	2.13	10148	1264	5	0	3	0	0	logfile

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