Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PLo	13494	2024-02-20	2021-09-01	2.8	2.91	2.98	2.8	0.006	0.90	0.0	0.05	14.47	0.01	1.116	0.85	1.06	4.8	95.1	0.1	-0.63	0.76	0.76	2.69	2.8	0.003	0.67	0.0	0.04	16.25	0.00	1.885	8.66	1.76	4.5	95.4	0.1	0.19	0.56	0.79	0.83	2.37	78855	9754	35	55	16	0	0	logfile
✔	7PLT	13501	2024-02-14	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	1.0	0.07	14.64	0.01	1.312	4.16	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.003	0.64	0.0	0.04	15.63	0.00	2.034	7.29	1.02	1.1	98.9	0.0	1.55	0.65	0.91	0.88	2.13	10148	1264	5	0	3	0	0	logfile
✔	7PLW	13504	2024-02-14	2021-09-01	3.5	4.05	3.55	3.5	0.005	0.84	0.0	0.05	15.16	0.01	1.323	4.81	0.00	0.2	99.8	0.0	-1.69	0.91	0.83	3.00	3.5	0.003	0.65	0.0	0.04	15.91	0.00	2.001	8.48	0.92	1.5	98.5	0.0	1.10	1.31	0.91	0.85	2.42	10139	1263	5	0	3	0	0	logfile
✔	7PLX	13505	2024-02-14	2021-09-01	3.6	4.05	3.55	3.5	0.005	0.82	1.0	0.05	14.95	0.01	1.321	5.85	0.00	0.2	99.8	0.0	-1.17	0.90	0.81	3.07	3.5	0.004	0.71	0.0	0.04	15.70	0.00	1.919	10.51	1.20	2.0	98.0	0.0	1.51	1.32	0.92	0.85	2.74	10139	1263	5	0	3	0	0	logfile
✔	7PLV	13503	2024-02-14	2021-09-01	3.5	4.06	3.57	3.5	0.005	0.81	0.0	0.05	15.02	0.01	1.322	4.61	0.00	0.4	99.6	0.0	-1.54	0.91	0.83	3.00	3.5	0.003	0.64	0.0	0.04	15.62	0.00	2.121	7.59	0.92	1.4	98.6	0.0	1.74	0.70	0.92	0.86	2.49	10139	1263	5	0	3	0	0	logfile
✔	7VBP	31884	2024-02-23	2021-09-01	2.8	2.85	—	2.8	0.007	0.88	0.0	0.04	16.74	0.01	1.741	9.47	0.32	4.3	95.7	0.1	1.21	0.75	0.89	3.79	2.8	0.002	0.55	0.0	0.04	17.12	0.00	2.038	7.14	1.60	3.6	96.3	0.0	1.88	0.34	0.75	0.90	3.28	39022	4652	61	0	21	349	0	logfile
✔	7VBZ	31886	2024-02-21	2021-09-01	2.4	2.48	—	2.5	0.009	0.93	6.0	0.06	16.93	0.01	1.907	11.30	2.07	3.7	96.0	0.3	-0.05	0.74	0.89	4.87	2.4	0.004	0.61	0.0	0.04	17.17	0.00	2.102	5.69	1.91	3.1	96.8	0.1	0.28	0.90	0.75	0.91	5.24	29292	3543	45	0	19	730	0	logfile
✔	7VBY	31885	2024-02-14	2021-09-01	2.54	3.43	—	3.1	0.007	0.85	2.0	0.08	16.97	0.00	2.120	17.97	0.75	2.3	97.5	0.2	1.56	0.64	0.77	4.64	3.1	0.003	0.76	0.0	0.04	17.57	0.01	2.181	7.81	2.74	2.8	97.2	0.0	2.24	1.32	0.66	0.89	4.38	8207	951	19	0	23	0	0	logfile
✔	7VBN	31883	2024-02-20	2021-08-31	2.4	2.48	—	2.5	0.006	0.75	2.0	0.05	16.91	0.01	2.002	8.61	1.39	3.1	96.8	0.1	0.39	0.78	0.89	4.54	2.5	0.002	0.52	0.0	0.04	17.06	0.00	2.120	5.97	1.75	3.2	96.8	0.1	0.57	0.80	0.77	0.90	4.48	29042	3522	44	0	17	713	0	logfile
✔	7PLH	13489	2024-02-16	2021-08-31	3.57	3.84	—	3.8	0.011	1.67	14.0	0.10	22.70	0.01	1.901	13.37	8.98	1.9	98.1	0.0	-2.29	0.48	0.77	1.50	3.8	0.003	0.66	0.0	0.04	19.76	0.00	1.894	11.19	3.26	2.9	97.1	0.0	0.19	3.43	0.48	0.84	1.64	15542	1820	16	44	14	0	0	logfile
✔	7S0S	24792	2024-02-22	2021-08-31	3.05	3.10	—	3.1	0.008	0.83	0.0	0.05	23.92	0.01	1.722	9.76	1.24	6.2	93.8	0.0	-1.73	0.58	0.66	0.70	3.1	0.007	0.77	0.0	0.04	23.70	0.01	1.197	9.36	5.52	6.0	94.0	0.0	-1.39	0.94	0.70	0.85	2.47	100057	3946	46	3236	407	0	0	logfile
✔	7VBi	31880	2024-02-14	2021-08-31	3.0	3.19	—	3.2	0.011	1.13	0.0	0.06	14.91	0.01	2.181	4.22	0.81	5.6	94.4	0.0	-3.46	0.66	0.80	3.10	3.2	0.003	0.62	0.0	0.04	17.11	0.00	2.141	7.68	2.54	4.3	95.7	0.0	0.20	1.19	0.66	0.80	2.32	9223	1158	6	0	0	0	0	logfile
✔	7S0T	24793	2024-02-17	2021-08-31	3.05	3.49	—	3.2	0.006	0.72	0.0	0.76	13.86	0.00	2.181	6.29	0.00	6.1	93.9	0.0	0.29	0.86	0.81	2.64	3.2	0.008	1.34	0.0	0.24	15.31	0.00	2.162	8.56	2.04	8.5	91.5	0.0	-0.43	0.37	0.87	0.84	2.84	17095	2179	13	24	3	31	0	logfile
✔	7VBH	31879	2024-02-14	2021-08-31	3.0	3.20	—	3.2	0.010	1.12	1.0	0.06	15.92	0.01	1.784	12.22	0.52	4.7	95.3	0.0	-4.06	0.61	0.66	1.58	3.2	0.003	0.65	0.0	0.04	17.28	0.00	2.126	9.39	3.51	4.4	95.6	0.0	-0.01	1.83	0.69	0.81	2.25	9116	1141	7	0	1	0	0	logfile
✔	7VBL	31881	2024-02-23	2021-08-31	2.6	2.63	—	2.6	0.009	1.08	7.0	0.06	17.80	0.01	1.707	12.57	0.98	3.8	96.0	0.2	-0.18	0.72	0.88	4.57	2.6	0.003	0.61	0.0	0.04	17.50	0.00	2.152	5.73	1.58	3.3	96.6	0.1	1.86	0.91	0.76	0.91	4.55	40142	4727	63	0	28	431	0	logfile
✔	7PLM	13493	2024-02-17	2021-08-31	2.9	2.35	—	2.7	0.006	0.70	0.0	0.05	14.55	0.01	1.802	14.13	4.98	4.5	95.5	0.0	-0.88	0.61	0.76	3.71	2.7	0.003	0.75	1.0	0.04	16.28	0.00	1.881	13.50	1.96	3.1	96.9	0.0	-0.20	0.97	0.60	0.76	2.78	18225	2354	6	0	12	114	0	logfile
✔	7VBM	31882	2024-02-14	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.39	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.56	0.0	0.03	28.75	0.00	2.205	7.05	1.25	1.7	98.3	0.0	2.66	0.29	0.68	0.80	1.89	10475	677	10	252	0	0	0	logfile
✔	7VBC	31878	2024-02-22	2021-08-31	3.01	3.31	—	3.4	0.010	1.48	84.0	0.10	16.48	0.01	1.468	33.53	6.11	9.1	90.4	0.4	-3.43	0.60	0.67	1.66	3.4	0.006	0.83	0.0	0.05	17.69	0.01	2.008	13.96	3.29	8.8	91.1	0.1	-1.48	1.45	0.65	0.77	1.92	33414	4100	20	40	6	0	0	logfile
✔	7VBA	31876	2024-02-22	2021-08-31	2.89	3.13	—	3.2	0.010	1.43	80.0	0.10	16.31	0.01	1.758	27.84	5.76	8.6	91.0	0.3	-3.50	0.67	0.79	2.64	3.2	0.003	0.69	0.0	0.04	17.88	0.00	2.018	10.09	3.33	7.4	92.5	0.0	-1.33	0.62	0.66	0.80	2.64	33079	4049	20	42	7	0	0	logfile
✔	7VB7	31874	2024-02-21	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.79	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	2.4	0.004	0.59	0.0	0.04	16.83	0.00	2.093	4.34	1.58	3.3	96.7	0.0	0.61	0.22	0.77	0.91	5.45	29279	3543	45	0	19	736	0	logfile

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